Wall clock time and date at job start Tue Mar 31 2020 18:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46956 * 2 1 4 4 N 1.46501 * 109.47246 * 180.02562 * 3 2 1 5 5 C 1.46500 * 119.99902 * 90.00211 * 4 3 2 6 6 C 1.53007 * 109.47062 * 90.00206 * 5 4 3 7 7 C 1.39058 * 120.00135 * 270.00499 * 4 3 2 8 8 C 1.39234 * 119.92526 * 359.72348 * 7 4 3 9 9 C 1.37589 * 120.07177 * 179.76254 * 8 7 4 10 10 C 1.39854 * 119.92673 * 0.53749 * 9 8 7 11 11 C 1.47415 * 120.07575 * 179.70147 * 10 9 8 12 12 O 1.21626 * 120.00454 * 142.46350 * 11 10 9 13 13 N 1.34782 * 119.99729 * 322.45915 * 11 10 9 14 14 C 1.36910 * 119.99810 * 186.36606 * 13 11 10 15 15 H 1.08001 * 119.99892 * 346.25336 * 14 13 11 16 16 C 1.39010 * 119.99545 * 166.26259 * 14 13 11 17 17 N 1.31383 * 120.00572 * 34.55765 * 16 14 13 18 18 Si 1.86807 * 119.99492 * 214.55669 * 16 14 13 19 19 H 1.48503 * 109.47006 * 90.00198 * 18 16 14 20 20 H 1.48501 * 109.46880 * 210.00201 * 18 16 14 21 21 H 1.48497 * 109.47085 * 329.99775 * 18 16 14 22 22 C 1.46501 * 119.99845 * 6.36554 * 13 11 10 23 23 C 1.50702 * 109.47061 * 107.01836 * 22 13 11 24 24 O 1.20828 * 119.99620 * 359.97438 * 23 22 13 25 25 O 1.34224 * 119.99785 * 179.97438 * 23 22 13 26 26 C 1.39857 * 119.85365 * 359.71462 * 10 9 8 27 27 C 1.37595 * 119.92175 * 0.02562 * 26 10 9 28 28 H 1.08997 * 109.47489 * 59.99372 * 1 2 3 29 29 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46587 * 299.99247 * 1 2 3 31 31 H 1.09005 * 109.46587 * 240.00753 * 2 1 3 32 32 H 1.08997 * 109.47489 * 120.00628 * 2 1 3 33 33 H 1.09005 * 109.46858 * 60.00919 * 3 2 1 34 34 H 1.08997 * 109.47535 * 300.00601 * 3 2 1 35 35 H 1.09002 * 109.47350 * 330.00194 * 5 4 3 36 36 H 1.08998 * 109.47542 * 210.00190 * 5 4 3 37 37 H 1.08998 * 109.46928 * 300.00359 * 6 5 4 38 38 H 1.08998 * 109.46591 * 59.99857 * 6 5 4 39 39 H 1.08998 * 109.46784 * 179.97438 * 6 5 4 40 40 H 1.08004 * 119.95962 * 359.97438 * 8 7 4 41 41 H 1.08004 * 120.03804 * 180.25072 * 9 8 7 42 42 H 0.97001 * 120.00129 * 180.02562 * 17 16 14 43 43 H 1.09003 * 109.46894 * 227.01705 * 22 13 11 44 44 H 1.08994 * 109.47248 * 347.01802 * 22 13 11 45 45 H 0.96704 * 116.99631 * 180.02562 * 25 23 22 46 46 H 1.07993 * 120.04394 * 179.97438 * 26 10 9 47 47 H 1.08002 * 119.96265 * 180.02562 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2369 1.4428 -1.2697 6 6 4.4917 2.8855 -1.7112 7 6 4.2008 1.4423 1.2033 8 6 3.5036 1.4478 2.4085 9 6 4.1890 1.4426 3.6016 10 6 5.5875 1.4432 3.6028 11 6 6.3252 1.4443 4.8791 12 8 7.3529 0.8031 4.9881 13 7 5.8608 2.1561 5.9252 14 6 6.6095 2.2636 7.0664 15 1 7.4558 1.6106 7.2205 16 6 6.2802 3.2132 8.0267 17 7 5.0209 3.5178 8.2447 18 14 7.6283 4.0561 9.0073 19 1 8.0613 5.2865 8.2974 20 1 7.1109 4.4164 10.3518 21 1 8.7844 3.1354 9.1523 22 6 4.5548 2.8146 5.8411 23 6 3.5607 2.0696 6.6942 24 8 3.9075 1.0889 7.3089 25 8 2.2901 2.4955 6.7710 26 6 6.2848 1.4430 2.3904 27 6 5.5931 1.4428 1.2009 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.6475 0.9291 -2.0292 36 1 5.1894 0.9290 -1.1399 37 1 3.5392 3.3993 -1.8409 38 1 5.0811 3.3991 -0.9516 39 1 5.0367 2.8856 -2.6551 40 1 2.4236 1.4527 2.4068 41 1 3.6476 1.4428 4.5361 42 1 4.7912 4.1807 8.9146 43 1 4.6419 3.8411 6.1972 44 1 4.2151 2.8169 4.8054 45 1 1.6893 1.9853 7.3312 46 1 7.3647 1.4439 2.3877 47 1 6.1309 1.4422 0.2643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737019945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:54 Heat of formation + Delta-G solvation = -82.204250 kcal Electronic energy + Delta-G solvation = -29773.524186 eV Core-core repulsion = 25728.931719 eV Total energy + Delta-G solvation = -4044.592467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.68452 -40.60596 -39.77968 -37.61094 -37.04378 -36.32701 -34.71550 -33.92895 -32.40358 -31.81630 -29.99437 -29.48694 -27.36902 -26.39602 -24.59059 -23.50357 -22.89564 -22.57665 -21.64607 -20.82783 -19.11392 -18.81407 -18.43923 -18.06475 -17.29838 -16.98600 -16.75006 -16.45127 -16.06975 -15.82973 -15.46436 -15.31642 -15.26794 -14.89646 -14.71001 -14.43745 -14.14730 -13.87727 -13.76405 -13.63225 -13.57438 -13.32096 -13.11658 -12.87883 -12.67030 -12.61484 -12.51238 -12.35660 -12.18895 -12.13490 -12.11613 -11.88643 -11.59677 -11.44391 -11.39435 -10.82281 -10.75730 -10.42778 -10.07662 -9.85588 -8.59577 -8.19080 -5.85459 0.25417 0.48499 1.35077 1.39834 1.52113 1.68683 1.96181 2.17669 2.22236 2.47480 2.84407 2.90989 3.23896 3.79629 3.90658 3.92294 4.08183 4.14677 4.20093 4.24946 4.41395 4.45855 4.47250 4.50980 4.56060 4.66840 4.75008 4.78078 4.81481 4.88195 4.97773 4.98587 5.02083 5.12859 5.24424 5.27188 5.30594 5.35956 5.43611 5.44171 5.49610 5.62607 5.79646 5.94839 6.00198 6.37701 6.41466 6.55892 7.06746 7.28261 7.44814 7.93081 8.49580 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.003457 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.989792 B = 8097.749808 C = 9176.987170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.117 3.883 4 N -0.618 5.618 5 C 0.111 3.889 6 C -0.168 4.168 7 C 0.239 3.761 8 C -0.196 4.196 9 C -0.066 4.066 10 C -0.193 4.193 11 C 0.481 3.519 12 O -0.631 6.631 13 N -0.434 5.434 14 C -0.351 4.351 15 H 0.074 0.926 16 C 0.016 3.984 17 N -0.872 5.872 18 Si 0.982 3.018 19 H -0.262 1.262 20 H -0.273 1.273 21 H -0.279 1.279 22 C 0.116 3.884 23 C 0.504 3.496 24 O -0.549 6.549 25 O -0.515 6.515 26 C -0.032 4.032 27 C -0.195 4.195 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.114 0.886 42 H 0.281 0.719 43 H 0.113 0.887 44 H 0.134 0.866 45 H 0.413 0.587 46 H 0.118 0.882 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.517 1.910 -21.155 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C -0.006 4.006 4 N -0.326 5.326 5 C -0.011 4.011 6 C -0.226 4.226 7 C 0.133 3.867 8 C -0.218 4.218 9 C -0.086 4.086 10 C -0.198 4.198 11 C 0.274 3.726 12 O -0.519 6.519 13 N -0.152 5.152 14 C -0.477 4.477 15 H 0.092 0.908 16 C -0.188 4.188 17 N -0.509 5.509 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.198 1.198 21 H -0.204 1.204 22 C -0.009 4.009 23 C 0.346 3.654 24 O -0.438 6.438 25 O -0.328 6.328 26 C -0.052 4.052 27 C -0.217 4.217 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.091 0.909 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.272 0.728 46 H 0.136 0.864 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.910 1.704 -21.212 24.387 hybrid contribution 0.436 -0.283 1.886 1.957 sum -11.474 1.420 -19.326 22.521 Atomic orbital electron populations 1.21688 0.94222 1.02145 1.02517 1.21926 0.96793 0.97267 1.01915 1.21691 0.78210 0.96817 1.03859 1.46731 1.05436 1.77925 1.02472 1.21623 0.97599 0.97558 0.84326 1.22183 1.02121 0.96654 1.01673 1.17936 0.91048 0.91100 0.86567 1.20697 1.00505 1.10663 0.89898 1.21204 0.92345 0.96480 0.98552 1.19652 0.94223 1.13090 0.92877 1.18621 0.86664 0.82231 0.85114 1.90540 1.29380 1.46835 1.85183 1.43574 1.14614 1.44324 1.12648 1.19421 1.10263 1.18963 0.99073 0.90833 1.25893 0.98661 0.96617 0.97621 1.69873 1.17132 1.31010 1.32901 0.85142 0.78524 0.78753 0.77101 1.18647 1.19791 1.20431 1.21735 0.81485 0.97898 0.99776 1.23472 0.81156 0.81241 0.79527 1.90604 1.79020 1.29532 1.44689 1.84441 1.21308 1.59451 1.67574 1.20894 0.99650 0.93996 0.90628 1.20728 0.92370 1.10688 0.97944 0.91397 0.92627 0.92502 0.91617 0.93497 0.90520 0.88644 0.88791 0.90519 0.92294 0.93740 0.90255 0.83388 0.86838 0.90865 0.86960 0.84928 0.72769 0.86379 0.83098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.14 -1.87 6.26 30.59 0.19 -1.68 16 3 C 0.12 1.53 5.15 86.38 0.44 1.98 16 4 N -0.62 -10.58 2.59 -697.26 -1.81 -12.38 16 5 C 0.11 1.38 5.86 86.38 0.51 1.88 16 6 C -0.17 -1.95 10.24 71.98 0.74 -1.21 16 7 C 0.24 5.89 6.55 38.47 0.25 6.15 16 8 C -0.20 -5.41 9.18 22.36 0.21 -5.20 16 9 C -0.07 -2.41 7.34 22.51 0.17 -2.25 16 10 C -0.19 -8.28 5.43 -20.08 -0.11 -8.39 16 11 C 0.48 26.45 7.31 86.66 0.63 27.08 16 12 O -0.63 -39.53 16.49 -4.11 -0.07 -39.59 16 13 N -0.43 -24.14 2.36 -643.33 -1.52 -25.65 16 14 C -0.35 -21.21 8.59 84.09 0.72 -20.49 16 15 H 0.07 4.89 7.41 -2.91 -0.02 4.87 16 16 C 0.02 0.86 5.06 84.95 0.43 1.29 16 17 N -0.87 -45.90 8.79 21.67 0.19 -45.71 16 18 Si 0.98 43.65 29.67 68.60 2.04 45.68 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 22 C 0.12 5.41 4.83 85.63 0.41 5.82 16 23 C 0.50 23.52 4.75 71.24 0.34 23.86 16 24 O -0.55 -30.76 16.37 21.96 0.36 -30.40 16 25 O -0.52 -18.46 13.42 -51.36 -0.69 -19.14 16 26 C -0.03 -1.15 9.61 22.51 0.22 -0.93 16 27 C -0.20 -5.29 9.18 22.36 0.21 -5.08 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.07 6.16 -2.38 -0.01 1.06 16 34 H 0.10 0.86 8.07 -2.39 -0.02 0.85 16 35 H 0.09 0.80 8.07 -2.39 -0.02 0.78 16 36 H 0.08 0.99 6.17 -2.39 -0.01 0.98 16 37 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.15 3.28 6.11 -2.91 -0.02 3.27 16 41 H 0.11 4.37 4.40 -2.91 -0.01 4.36 16 42 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 43 H 0.11 5.39 6.41 -2.39 -0.02 5.37 16 44 H 0.13 5.33 3.82 -2.39 -0.01 5.32 16 45 H 0.41 11.13 9.10 -74.05 -0.67 10.45 16 46 H 0.12 4.38 8.03 -2.91 -0.02 4.36 16 47 H 0.15 3.15 6.11 -2.91 -0.02 3.14 16 Total: -1.00 -80.33 379.57 4.91 -75.43 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.34 Total: 29.81 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 6.07 Total: 21.96 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -3.13 Total: -83.75 kcal Atomic # 8 Polarization: -88.74 SS G_CDS: -0.40 Total: -89.14 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.04 Total: 45.68 kcal Total: -80.33 4.91 -75.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737019945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.777 kcal (2) G-P(sol) polarization free energy of solvation -80.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds