Wall clock time and date at job start Tue Mar 31 2020 17:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47088 * 2 1 4 4 C 1.50707 * 109.47382 * 239.99998 * 2 1 3 5 5 H 1.08000 * 120.00268 * 240.00149 * 4 2 1 6 6 C 1.37881 * 119.99661 * 59.99797 * 4 2 1 7 7 N 1.31510 * 120.00312 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99913 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47234 * 89.99921 * 8 6 4 10 10 H 1.48503 * 109.47279 * 210.00043 * 8 6 4 11 11 H 1.48501 * 109.47193 * 329.99923 * 8 6 4 12 12 C 1.52998 * 109.47389 * 120.00344 * 2 1 3 13 13 O 1.45199 * 109.46806 * 300.00142 * 12 2 1 14 14 C 1.34227 * 116.99979 * 180.02562 * 13 12 2 15 15 O 1.20818 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00028 * 180.27231 * 14 13 12 17 17 C 1.52999 * 109.47417 * 179.72274 * 16 14 13 18 18 H 1.08993 * 109.47165 * 305.00324 * 17 16 14 19 19 N 1.46500 * 109.46942 * 65.00278 * 17 16 14 20 20 C 1.34779 * 120.00089 * 62.20228 * 19 17 16 21 21 N 1.34776 * 119.99850 * 184.63522 * 20 19 17 22 22 O 1.21581 * 119.99800 * 4.63462 * 20 19 17 23 23 C 1.50697 * 109.47187 * 184.99886 * 17 16 14 24 24 C 1.38241 * 119.99920 * 200.00068 * 23 17 16 25 25 C 1.38239 * 119.99714 * 179.78792 * 24 23 17 26 26 C 1.38236 * 119.99879 * 0.44968 * 25 24 23 27 27 C 1.38231 * 119.99925 * 359.81048 * 26 25 24 28 28 C 1.38232 * 119.99926 * 20.28560 * 23 17 16 29 29 H 1.08991 * 109.47397 * 300.00014 * 1 2 3 30 30 H 1.08998 * 109.47315 * 60.00672 * 1 2 3 31 31 H 1.09010 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46961 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47143 * 299.99910 * 3 2 1 34 34 H 1.09000 * 109.46896 * 59.99999 * 3 2 1 35 35 H 0.96998 * 120.00291 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47512 * 180.02562 * 12 2 1 37 37 H 1.08995 * 109.47586 * 59.99659 * 12 2 1 38 38 H 1.09000 * 109.47159 * 299.72944 * 16 14 13 39 39 H 1.09007 * 109.46969 * 59.72453 * 16 14 13 40 40 H 0.97006 * 119.99909 * 242.21000 * 19 17 16 41 41 H 0.97001 * 120.00459 * 0.02562 * 21 20 19 42 42 H 0.97006 * 119.99583 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.99783 * 0.02562 * 24 23 17 44 44 H 1.07997 * 119.99645 * 180.28142 * 25 24 23 45 45 H 1.08001 * 119.99319 * 179.82764 * 26 25 24 46 46 H 1.08004 * 119.99701 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.00720 * 359.97438 * 28 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1124 11 1 3.6293 -1.7582 -3.7123 12 6 2.0400 -0.7213 1.2492 13 8 1.5560 -0.0369 2.4347 14 6 1.9171 -0.5466 3.6228 15 8 2.6141 -1.5323 3.6705 16 6 1.4476 0.1066 4.8971 17 6 1.9906 -0.6699 6.0984 18 1 1.7013 -1.7174 6.0148 19 7 3.4517 -0.5675 6.1260 20 6 4.0403 0.6363 6.2706 21 7 5.3821 0.7428 6.2024 22 8 3.3608 1.6261 6.4624 23 6 1.4224 -0.0916 7.3688 24 6 2.0520 -0.3261 8.5770 25 6 1.5332 0.2080 9.7417 26 6 0.3799 0.9688 9.6994 27 6 -0.2526 1.1988 8.4920 28 6 0.2686 0.6684 7.3267 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.7095 1.1618 -3.4844 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 1.8106 1.1337 4.9341 39 1 0.3579 0.1052 4.9260 40 1 3.9956 -1.3662 6.0402 41 1 5.9243 -0.0468 6.0490 42 1 5.8058 1.6092 6.3068 43 1 2.9511 -0.9234 8.6103 44 1 2.0276 0.0286 10.6850 45 1 -0.0269 1.3838 10.6098 46 1 -1.1539 1.7929 8.4590 47 1 -0.2257 0.8481 6.3834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764838576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:09 Heat of formation + Delta-G solvation = -95.702605 kcal Electronic energy + Delta-G solvation = -29281.664291 eV Core-core repulsion = 25236.486491 eV Total energy + Delta-G solvation = -4045.177799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81458 -39.61915 -38.87292 -36.73992 -35.34120 -34.75824 -33.84203 -31.69372 -31.25625 -30.82245 -29.68076 -25.99108 -25.60934 -25.24618 -24.49603 -22.69451 -21.98024 -20.91344 -19.78341 -18.84262 -18.65267 -17.79548 -17.29038 -16.64487 -16.06536 -15.88045 -15.63593 -15.26294 -15.05331 -14.92640 -14.67533 -14.45282 -14.24279 -13.51824 -13.36200 -13.15063 -12.97500 -12.93503 -12.58146 -12.21617 -11.91913 -11.74374 -11.43452 -11.19759 -11.18762 -11.03738 -10.96164 -10.71244 -10.40615 -10.31278 -10.21060 -10.01149 -9.88409 -9.72687 -9.40568 -9.33617 -9.22292 -8.96099 -8.75598 -8.71536 -8.37977 -6.02101 -4.13947 1.26553 1.35776 2.64371 2.82097 3.16225 3.23066 3.26949 3.34017 3.38297 3.74678 4.37010 4.38088 4.61759 4.62922 4.88820 4.93227 4.99440 5.07991 5.24107 5.31513 5.38994 5.47947 5.57859 5.81891 5.88798 5.94946 6.09302 6.10381 6.29052 6.36815 6.44236 6.47169 6.51921 6.65497 6.76101 6.82686 6.92610 6.99045 7.09360 7.15651 7.17477 7.41378 7.62979 7.69707 7.88106 8.05674 8.15766 8.27505 8.39782 8.58131 8.86028 9.51519 10.99085 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.002576 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.413832 B =10866.043111 C =11445.106368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.129 4.129 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.086 3.914 13 O -0.348 6.348 14 C 0.459 3.541 15 O -0.524 6.524 16 C -0.140 4.140 17 C 0.224 3.776 18 H 0.111 0.889 19 N -0.732 5.732 20 C 0.704 3.296 21 N -0.869 5.869 22 O -0.582 6.582 23 C -0.075 4.075 24 C -0.101 4.101 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.117 4.117 28 C -0.107 4.107 29 H 0.017 0.983 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.084 0.916 34 H 0.017 0.983 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.403 0.597 41 H 0.396 0.604 42 H 0.413 0.587 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 -1.689 22.840 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.014 3.986 13 O -0.263 6.263 14 C 0.302 3.698 15 O -0.414 6.414 16 C -0.178 4.178 17 C 0.118 3.882 18 H 0.128 0.872 19 N -0.387 5.387 20 C 0.403 3.597 21 N -0.437 5.437 22 O -0.459 6.459 23 C -0.076 4.076 24 C -0.120 4.120 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.135 4.135 28 C -0.125 4.125 29 H 0.036 0.964 30 H 0.103 0.897 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.103 0.897 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.237 0.763 41 H 0.223 0.777 42 H 0.245 0.755 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.139 0.861 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.119 -1.116 22.775 22.900 hybrid contribution 1.251 -0.955 -1.022 1.876 sum 3.369 -2.070 21.753 22.109 Atomic orbital electron populations 1.21769 0.97333 0.98910 1.00713 1.18236 0.93416 0.93052 0.88327 1.21767 0.98003 0.98235 1.00708 1.20936 1.31981 1.12258 0.89851 0.92576 1.24861 0.94826 0.94900 0.98782 1.69829 1.36345 1.22511 1.23304 0.86546 0.79249 0.79384 0.82527 1.20631 1.21140 1.19948 1.23631 0.97999 0.95679 0.81341 1.86532 1.68951 1.55885 1.14978 1.23419 0.77618 0.82293 0.86453 1.90562 1.36358 1.26089 1.88433 1.21996 1.03586 1.03296 0.88923 1.19318 0.78694 0.99939 0.90249 0.87169 1.45004 1.06716 1.08034 1.78964 1.16017 0.82322 0.83939 0.77466 1.43012 1.05917 1.13975 1.80807 1.90973 1.62641 1.36191 1.56139 1.19874 0.95521 0.98110 0.94128 1.20778 0.99302 0.99943 0.91950 1.21040 0.96573 0.98435 0.97915 1.21102 0.96114 0.99156 0.97853 1.21105 1.00021 0.99790 0.92592 1.21114 0.95923 0.96794 0.98682 0.96416 0.89747 0.95859 0.95939 0.89737 0.96423 0.92887 0.92789 0.92631 0.85839 0.86800 0.76312 0.77665 0.75507 0.86683 0.86512 0.86460 0.86091 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.11 37.16 0.30 -2.84 16 2 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 3 C -0.13 -3.18 8.11 37.16 0.30 -2.88 16 4 C -0.51 -13.72 8.01 -34.44 -0.28 -13.99 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 7 N -0.88 -24.08 9.35 55.43 0.52 -23.56 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.09 1.91 4.26 37.16 0.16 2.07 16 13 O -0.35 -6.99 8.88 -39.25 -0.35 -7.34 16 14 C 0.46 7.82 7.82 36.01 0.28 8.11 16 15 O -0.52 -9.40 15.10 -18.74 -0.28 -9.69 16 16 C -0.14 -1.85 4.38 -27.88 -0.12 -1.98 16 17 C 0.22 2.53 2.56 -69.08 -0.18 2.36 16 18 H 0.11 1.13 7.95 -51.93 -0.41 0.72 16 19 N -0.73 -7.79 3.74 -59.82 -0.22 -8.01 16 20 C 0.70 8.63 7.88 -86.92 -0.68 7.95 16 21 N -0.87 -7.44 8.88 27.63 0.25 -7.19 16 22 O -0.58 -9.30 14.46 5.29 0.08 -9.22 16 23 C -0.08 -0.85 4.02 -104.62 -0.42 -1.27 16 24 C -0.10 -1.07 8.95 -39.58 -0.35 -1.43 16 25 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 27 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 28 C -0.11 -1.18 9.12 -39.58 -0.36 -1.54 16 29 H 0.02 0.38 7.68 -51.93 -0.40 -0.01 16 30 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 31 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 34 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.05 1.21 8.13 -51.93 -0.42 0.79 16 37 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 38 H 0.12 1.86 6.38 -51.93 -0.33 1.53 16 39 H 0.11 1.26 6.35 -51.93 -0.33 0.93 16 40 H 0.40 3.48 8.85 -40.82 -0.36 3.12 16 41 H 0.40 2.30 8.85 -40.82 -0.36 1.94 16 42 H 0.41 3.19 8.93 -40.82 -0.36 2.82 16 43 H 0.12 1.07 7.72 -52.49 -0.41 0.67 16 44 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 47 H 0.13 1.26 5.86 -52.49 -0.31 0.95 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -32.40 381.50 -8.82 -41.22 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.80 Total: 9.12 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.73 Total: -6.87 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.54 Total: -38.77 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.56 Total: -26.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.40 -8.82 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764838576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.485 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds