Wall clock time and date at job start Tue Mar 31 2020 17:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47088 * 2 1 4 4 C 1.50707 * 109.47382 * 239.99998 * 2 1 3 5 5 H 1.08000 * 120.00268 * 240.00149 * 4 2 1 6 6 C 1.37881 * 119.99661 * 59.99797 * 4 2 1 7 7 N 1.31510 * 120.00312 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99913 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47234 * 89.99921 * 8 6 4 10 10 H 1.48503 * 109.47279 * 210.00043 * 8 6 4 11 11 H 1.48501 * 109.47193 * 329.99923 * 8 6 4 12 12 C 1.52998 * 109.47389 * 120.00344 * 2 1 3 13 13 O 1.45199 * 109.46806 * 300.00142 * 12 2 1 14 14 C 1.34227 * 116.99979 * 180.02562 * 13 12 2 15 15 O 1.20818 * 120.00207 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00028 * 180.27231 * 14 13 12 17 17 C 1.52999 * 109.47417 * 179.72274 * 16 14 13 18 18 H 1.08993 * 109.47165 * 305.00324 * 17 16 14 19 19 N 1.46500 * 109.46942 * 65.00278 * 17 16 14 20 20 C 1.34779 * 120.00089 * 62.20228 * 19 17 16 21 21 N 1.34776 * 119.99850 * 184.63522 * 20 19 17 22 22 O 1.21581 * 119.99800 * 4.63462 * 20 19 17 23 23 C 1.50697 * 109.47187 * 184.99886 * 17 16 14 24 24 C 1.38241 * 119.99920 * 200.00068 * 23 17 16 25 25 C 1.38239 * 119.99714 * 179.78792 * 24 23 17 26 26 C 1.38236 * 119.99879 * 0.44968 * 25 24 23 27 27 C 1.38231 * 119.99925 * 359.81048 * 26 25 24 28 28 C 1.38232 * 119.99926 * 20.28560 * 23 17 16 29 29 H 1.08991 * 109.47397 * 300.00014 * 1 2 3 30 30 H 1.08998 * 109.47315 * 60.00672 * 1 2 3 31 31 H 1.09010 * 109.46881 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46961 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47143 * 299.99910 * 3 2 1 34 34 H 1.09000 * 109.46896 * 59.99999 * 3 2 1 35 35 H 0.96998 * 120.00291 * 179.97438 * 7 6 4 36 36 H 1.08994 * 109.47512 * 180.02562 * 12 2 1 37 37 H 1.08995 * 109.47586 * 59.99659 * 12 2 1 38 38 H 1.09000 * 109.47159 * 299.72944 * 16 14 13 39 39 H 1.09007 * 109.46969 * 59.72453 * 16 14 13 40 40 H 0.97006 * 119.99909 * 242.21000 * 19 17 16 41 41 H 0.97001 * 120.00459 * 0.02562 * 21 20 19 42 42 H 0.97006 * 119.99583 * 180.02562 * 21 20 19 43 43 H 1.07997 * 119.99783 * 0.02562 * 24 23 17 44 44 H 1.07997 * 119.99645 * 180.28142 * 25 24 23 45 45 H 1.08001 * 119.99319 * 179.82764 * 26 25 24 46 46 H 1.08004 * 119.99701 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.00720 * 359.97438 * 28 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1413 -5.1124 11 1 3.6293 -1.7582 -3.7123 12 6 2.0400 -0.7213 1.2492 13 8 1.5560 -0.0369 2.4347 14 6 1.9171 -0.5466 3.6228 15 8 2.6141 -1.5323 3.6705 16 6 1.4476 0.1066 4.8971 17 6 1.9906 -0.6699 6.0984 18 1 1.7013 -1.7174 6.0148 19 7 3.4517 -0.5675 6.1260 20 6 4.0403 0.6363 6.2706 21 7 5.3821 0.7428 6.2024 22 8 3.3608 1.6261 6.4624 23 6 1.4224 -0.0916 7.3688 24 6 2.0520 -0.3261 8.5770 25 6 1.5332 0.2080 9.7417 26 6 0.3799 0.9688 9.6994 27 6 -0.2526 1.1988 8.4920 28 6 0.2686 0.6684 7.3267 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.7095 1.1618 -3.4844 36 1 3.1300 -0.7209 1.2494 37 1 1.6767 -1.7489 1.2492 38 1 1.8106 1.1337 4.9341 39 1 0.3579 0.1052 4.9260 40 1 3.9956 -1.3662 6.0402 41 1 5.9243 -0.0468 6.0490 42 1 5.8058 1.6092 6.3068 43 1 2.9511 -0.9234 8.6103 44 1 2.0276 0.0286 10.6850 45 1 -0.0269 1.3838 10.6098 46 1 -1.1539 1.7929 8.4590 47 1 -0.2257 0.8481 6.3834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764838576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:08 Heat of formation + Delta-G solvation = -115.498549 kcal Electronic energy + Delta-G solvation = -29282.522707 eV Core-core repulsion = 25236.486491 eV Total energy + Delta-G solvation = -4046.036216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88653 -40.90953 -39.68114 -38.35256 -36.70359 -36.15420 -34.74027 -33.29878 -32.47937 -31.57977 -30.68278 -27.63140 -27.58684 -27.14267 -25.68722 -23.54363 -22.82291 -22.11339 -20.80945 -20.70295 -19.56147 -18.84318 -18.34550 -17.87239 -17.52966 -17.44272 -17.13084 -16.49005 -16.13317 -15.94789 -15.87017 -15.38777 -15.16879 -14.99348 -14.71268 -14.56165 -14.19530 -14.04926 -13.73890 -13.43909 -13.42700 -13.15381 -13.04819 -12.85659 -12.77741 -12.62871 -12.33897 -12.14390 -11.97749 -11.81641 -11.71437 -11.53871 -11.30226 -11.25021 -11.13992 -10.74191 -10.60641 -10.41128 -10.10952 -9.72115 -9.50015 -8.04794 -6.23337 0.49897 0.59736 1.26431 1.43073 1.44584 1.53377 1.81780 2.01565 2.25184 2.45182 2.97025 3.18588 3.60640 3.62038 3.73075 4.01409 4.10565 4.19474 4.26119 4.28277 4.30184 4.32175 4.47018 4.61678 4.68300 4.78102 4.80626 4.85904 5.03982 5.14309 5.18634 5.21353 5.21593 5.36752 5.43719 5.60663 5.62394 5.62665 5.68752 5.70230 5.74109 5.93317 6.05966 6.07489 6.17238 6.19287 6.36199 6.77851 6.85553 7.11781 7.44880 7.72021 8.94941 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.002576 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.413832 B =10866.043111 C =11445.106368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.119 4.119 4 C -0.533 4.533 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.100 3.900 13 O -0.359 6.359 14 C 0.457 3.543 15 O -0.532 6.532 16 C -0.128 4.128 17 C 0.226 3.774 18 H 0.122 0.878 19 N -0.725 5.725 20 C 0.697 3.303 21 N -0.855 5.855 22 O -0.622 6.622 23 C -0.086 4.086 24 C -0.112 4.112 25 C -0.130 4.130 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.125 4.125 29 H 0.031 0.969 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.018 0.982 33 H 0.063 0.937 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.136 0.864 40 H 0.413 0.587 41 H 0.410 0.590 42 H 0.418 0.582 43 H 0.124 0.876 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.024 -2.337 24.057 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.176 4.176 4 C -0.571 4.571 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.197 1.197 12 C 0.027 3.973 13 O -0.275 6.275 14 C 0.301 3.699 15 O -0.422 6.422 16 C -0.167 4.167 17 C 0.120 3.880 18 H 0.140 0.860 19 N -0.381 5.381 20 C 0.395 3.605 21 N -0.424 5.424 22 O -0.502 6.502 23 C -0.087 4.087 24 C -0.130 4.130 25 C -0.147 4.147 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.143 4.143 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.128 0.872 39 H 0.154 0.846 40 H 0.249 0.751 41 H 0.240 0.760 42 H 0.251 0.749 43 H 0.142 0.858 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.467 -1.800 24.005 24.199 hybrid contribution 1.172 -0.738 -1.315 1.910 sum 3.639 -2.538 22.690 23.119 Atomic orbital electron populations 1.21623 0.97123 0.98702 1.00239 1.18256 0.93621 0.93021 0.89061 1.21624 0.97628 0.98291 1.00102 1.21204 1.32299 1.12454 0.91108 0.93095 1.25538 0.94992 0.95546 1.01269 1.69945 1.36819 1.23311 1.23845 0.85635 0.78753 0.78390 0.79305 1.20188 1.20814 1.19692 1.23187 0.97293 0.95186 0.81678 1.86525 1.69414 1.56148 1.15409 1.24127 0.77178 0.82228 0.86342 1.90552 1.36667 1.26583 1.88392 1.22054 1.04976 1.02210 0.87417 1.19332 0.78962 1.00202 0.89502 0.86000 1.44935 1.06685 1.08064 1.78432 1.16244 0.83114 0.83755 0.77352 1.42880 1.04888 1.15005 1.79604 1.90944 1.63781 1.37504 1.57993 1.19895 0.95885 0.98691 0.94193 1.20964 0.99699 1.00306 0.92059 1.21360 0.96740 0.98080 0.98568 1.21437 0.96006 0.98820 0.98596 1.21397 1.00716 0.99834 0.92583 1.21315 0.96294 0.97319 0.99421 0.95016 0.91927 0.95866 0.96279 0.91825 0.95356 0.92853 0.93525 0.92908 0.87249 0.84609 0.75125 0.75953 0.74923 0.85818 0.84540 0.84310 0.84452 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.11 71.98 0.58 -5.17 16 2 C 0.06 3.00 0.58 -52.93 -0.03 2.97 16 3 C -0.12 -5.85 8.11 71.98 0.58 -5.27 16 4 C -0.53 -28.56 8.01 25.60 0.21 -28.35 16 5 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 6 C 0.03 1.41 5.15 84.66 0.44 1.85 16 7 N -0.90 -49.41 9.35 21.45 0.20 -49.21 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.52 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 12 C 0.10 4.40 4.26 71.98 0.31 4.71 16 13 O -0.36 -14.14 8.88 -51.39 -0.46 -14.60 16 14 C 0.46 15.12 7.82 71.24 0.56 15.67 16 15 O -0.53 -18.45 15.10 21.99 0.33 -18.12 16 16 C -0.13 -3.27 4.38 29.85 0.13 -3.14 16 17 C 0.23 4.83 2.56 44.24 0.11 4.94 16 18 H 0.12 2.30 7.95 -2.39 -0.02 2.28 16 19 N -0.73 -14.52 3.74 -461.43 -1.73 -16.25 16 20 C 0.70 16.41 7.88 179.05 1.41 17.82 16 21 N -0.85 -13.50 8.88 -184.75 -1.64 -15.14 16 22 O -0.62 -19.59 14.46 -3.97 -0.06 -19.65 16 23 C -0.09 -1.84 4.02 -19.87 -0.08 -1.92 16 24 C -0.11 -2.22 8.95 22.27 0.20 -2.02 16 25 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 26 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 27 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 28 C -0.13 -2.65 9.12 22.27 0.20 -2.45 16 29 H 0.03 1.39 7.68 -2.39 -0.02 1.37 16 30 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 31 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 3.40 6.07 -2.38 -0.01 3.38 16 34 H 0.03 1.28 7.68 -2.39 -0.02 1.26 16 35 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 36 H 0.05 2.09 8.13 -2.39 -0.02 2.07 16 37 H 0.05 2.32 8.13 -2.39 -0.02 2.30 16 38 H 0.11 3.24 6.38 -2.39 -0.02 3.22 16 39 H 0.14 2.82 6.35 -2.38 -0.02 2.81 16 40 H 0.41 6.46 8.85 -92.70 -0.82 5.64 16 41 H 0.41 4.06 8.85 -92.71 -0.82 3.24 16 42 H 0.42 5.96 8.93 -92.70 -0.83 5.13 16 43 H 0.12 2.12 7.72 -2.91 -0.02 2.10 16 44 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 46 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 47 H 0.13 2.49 5.86 -2.91 -0.02 2.47 16 Total: -1.00 -68.34 381.50 2.52 -65.81 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -1.44 Total: 29.37 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: 5.29 Total: -6.74 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -3.17 Total: -80.60 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.18 Total: -52.36 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -68.34 2.52 -65.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764838576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.688 kcal (2) G-P(sol) polarization free energy of solvation -68.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds