Wall clock time and date at job start Tue Mar 31 2020 18:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00057 * 2 1 4 4 C 1.50707 * 109.47317 * 180.02562 * 3 2 1 5 5 C 1.38294 * 119.92196 * 269.72477 * 4 3 2 6 6 C 1.38096 * 120.07484 * 179.76416 * 5 4 3 7 7 C 1.38933 * 119.92104 * 0.53542 * 6 5 4 8 8 N 1.39726 * 120.07554 * 179.70506 * 7 6 5 9 9 C 1.34777 * 119.99787 * 29.37647 * 8 7 6 10 10 O 1.21372 * 120.00465 * 5.44525 * 9 8 7 11 11 C 1.49358 * 119.99594 * 185.44697 * 9 8 7 12 12 O 1.21363 * 120.00174 * 0.83952 * 11 9 8 13 13 N 1.34771 * 119.99877 * 180.83758 * 11 9 8 14 14 C 1.46506 * 120.00067 * 354.67512 * 13 11 9 15 15 C 1.50702 * 109.47142 * 83.14485 * 14 13 11 16 16 H 1.08004 * 119.99522 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00184 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00243 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99825 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47438 * 89.99479 * 19 17 15 21 21 H 1.48494 * 109.47251 * 209.99850 * 19 17 15 22 22 H 1.48499 * 109.46902 * 329.99716 * 19 17 15 23 23 C 1.46503 * 120.00207 * 174.66876 * 13 11 9 24 24 C 1.53004 * 109.46768 * 124.58736 * 23 13 11 25 25 C 1.52994 * 109.47652 * 244.59314 * 23 13 11 26 26 C 1.38932 * 119.84763 * 359.71509 * 7 6 5 27 27 C 1.38090 * 119.92764 * 0.02562 * 26 7 6 28 28 H 1.08997 * 109.47139 * 60.00398 * 1 2 3 29 29 H 1.09001 * 109.46828 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47030 * 299.99987 * 1 2 3 31 31 H 1.08998 * 109.47558 * 299.99893 * 3 2 1 32 32 H 1.08997 * 109.47293 * 59.99695 * 3 2 1 33 33 H 1.08005 * 119.96084 * 0.02562 * 5 4 3 34 34 H 1.07999 * 120.03862 * 180.23411 * 6 5 4 35 35 H 0.96996 * 119.99511 * 209.38286 * 8 7 6 36 36 H 1.09000 * 109.46915 * 203.14120 * 14 13 11 37 37 H 1.08993 * 109.46856 * 323.14245 * 14 13 11 38 38 H 0.96995 * 120.00427 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.46789 * 4.59655 * 23 13 11 40 40 H 1.09004 * 109.46715 * 60.00873 * 24 23 13 41 41 H 1.09007 * 109.46806 * 180.02562 * 24 23 13 42 42 H 1.09003 * 109.47428 * 300.00531 * 24 23 13 43 43 H 1.09001 * 109.47186 * 59.99459 * 25 23 13 44 44 H 1.08997 * 109.47022 * 180.02562 * 25 23 13 45 45 H 1.09004 * 109.46871 * 299.99708 * 25 23 13 46 46 H 1.08005 * 120.03714 * 179.97438 * 26 7 6 47 47 H 1.07999 * 119.96748 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2012 1.1375 1.1977 6 6 5.5774 1.0236 1.2008 7 6 6.2711 0.9694 -0.0018 8 7 7.6641 0.8604 -0.0024 9 6 8.2916 0.2369 1.0144 10 8 7.6442 -0.3157 1.8796 11 6 9.7839 0.2260 1.0765 12 8 10.4310 0.7916 0.2197 13 7 10.4117 -0.4119 2.0842 14 6 9.6334 -0.9942 3.1803 15 6 9.1305 -2.3548 2.7718 16 1 9.3667 -2.7464 1.7933 17 6 8.3690 -3.0998 3.6471 18 7 7.9297 -4.2869 3.2904 19 14 7.9599 -2.4221 5.3391 20 1 6.6881 -1.6584 5.2723 21 1 7.8132 -3.5449 6.2998 22 1 9.0533 -1.5243 5.7902 23 6 11.8725 -0.5231 2.0834 24 6 12.4282 0.0493 3.3890 25 6 12.2720 -1.9948 1.9607 26 6 5.5764 1.0241 -1.2037 27 6 4.1998 1.1325 -1.1996 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 1.6886 1.8464 0.8899 33 1 3.6617 1.1842 2.1321 34 1 6.1143 0.9817 2.1369 35 1 8.1794 1.2335 -0.7345 36 1 10.2651 -1.0904 4.0633 37 1 8.7864 -0.3472 3.4082 38 1 7.3937 -4.8108 3.9060 39 1 12.2789 0.0352 1.2399 40 1 12.0218 -0.5091 4.2324 41 1 13.5151 -0.0331 3.3882 42 1 12.1436 1.0978 3.4763 43 1 11.8760 -2.4025 1.0306 44 1 13.3588 -2.0775 1.9606 45 1 11.8656 -2.5531 2.8042 46 1 6.1126 0.9826 -2.1404 47 1 3.6592 1.1755 -2.1335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773643277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:00 Heat of formation + Delta-G solvation = -65.725027 kcal Electronic energy + Delta-G solvation = -29289.916923 eV Core-core repulsion = 25246.039048 eV Total energy + Delta-G solvation = -4043.877874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.68521 -39.40858 -38.23864 -37.31916 -36.28293 -34.57254 -32.72742 -31.43231 -30.86334 -30.81343 -27.89856 -27.22150 -26.79014 -25.66068 -24.06984 -22.91318 -22.56565 -21.46106 -20.27013 -18.93327 -17.64859 -16.99817 -16.86469 -16.55200 -16.42152 -16.04543 -15.97819 -15.28225 -14.93149 -14.50657 -14.32524 -14.04137 -13.81495 -13.59277 -13.42762 -13.31576 -13.23900 -12.72302 -12.50180 -12.38200 -12.35063 -12.05948 -11.82664 -11.71525 -11.65532 -11.36178 -11.11431 -11.03365 -10.93092 -10.71462 -10.45379 -10.29829 -10.09608 -10.08065 -9.82637 -9.45512 -8.87324 -8.67014 -8.46752 -7.98761 -7.83875 -6.03009 -3.99289 1.22627 1.55141 2.09685 2.78745 3.31822 3.36315 3.40026 3.52755 3.85219 3.98155 4.19077 4.44485 4.78594 4.84883 4.88707 5.08966 5.11677 5.16646 5.23198 5.26836 5.29154 5.33126 5.49769 5.50195 5.51445 5.64757 5.71428 5.79279 5.96019 6.02418 6.11766 6.19356 6.27951 6.35109 6.43850 6.51796 6.54076 6.62540 6.69364 6.88963 6.93582 7.01926 7.10656 7.20129 7.48450 7.59999 7.89402 8.21837 8.48293 8.60379 8.97827 9.57393 11.10463 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.003619 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.467534 B = 7734.293653 C = 9349.477531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.108 3.892 4 C -0.121 4.121 5 C -0.074 4.074 6 C -0.128 4.128 7 C 0.171 3.829 8 N -0.660 5.660 9 C 0.491 3.509 10 O -0.432 6.432 11 C 0.512 3.488 12 O -0.558 6.558 13 N -0.550 5.550 14 C 0.198 3.802 15 C -0.509 4.509 16 H 0.072 0.928 17 C 0.080 3.920 18 N -0.896 5.896 19 Si 0.871 3.129 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.268 1.268 23 C 0.132 3.868 24 C -0.160 4.160 25 C -0.155 4.155 26 C -0.154 4.154 27 C -0.077 4.077 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.124 0.876 34 H 0.142 0.858 35 H 0.417 0.583 36 H 0.033 0.967 37 H 0.053 0.947 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.127 0.873 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 13.314 -5.638 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C 0.032 3.968 4 C -0.122 4.122 5 C -0.093 4.093 6 C -0.148 4.148 7 C 0.076 3.924 8 N -0.308 5.308 9 C 0.273 3.727 10 O -0.300 6.300 11 C 0.294 3.706 12 O -0.439 6.439 13 N -0.280 5.280 14 C 0.078 3.922 15 C -0.547 4.547 16 H 0.090 0.910 17 C -0.122 4.122 18 N -0.535 5.535 19 Si 0.699 3.301 20 H -0.199 1.199 21 H -0.214 1.214 22 H -0.193 1.193 23 C 0.030 3.970 24 C -0.218 4.218 25 C -0.213 4.213 26 C -0.175 4.175 27 C -0.096 4.096 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.254 0.746 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.145 0.855 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.941 12.828 -5.272 15.088 hybrid contribution -0.369 0.358 0.522 0.732 sum -6.310 13.186 -4.750 15.370 Atomic orbital electron populations 1.22744 0.81336 1.02827 0.99718 1.88045 1.19283 1.27579 1.95316 1.21287 0.90113 0.84961 1.00453 1.19464 0.93729 1.05400 0.93631 1.20892 0.93593 0.97372 0.97422 1.21271 0.94309 1.01179 0.98051 1.17806 0.82552 0.97807 0.94270 1.43255 1.04897 1.56993 1.25620 1.20366 0.89696 0.79745 0.82940 1.90930 1.66597 1.36616 1.35818 1.19722 0.87859 0.80336 0.82692 1.90652 1.67283 1.46139 1.39826 1.48022 1.06833 1.50702 1.22422 1.20286 0.91254 0.95879 0.84809 1.21051 1.32379 0.98421 1.02884 0.90961 1.24712 0.94880 0.94551 0.98045 1.69876 1.36065 1.11315 1.36252 0.86936 0.79681 0.78824 0.84686 1.19865 1.21405 1.19286 1.21082 0.79419 0.97638 0.98910 1.22148 1.00674 1.00988 0.97987 1.22088 0.99776 0.95371 1.04047 1.20815 0.94312 1.05898 0.96440 1.20709 0.93216 0.98327 0.97326 0.94235 0.89602 0.94147 0.92722 0.92647 0.85790 0.84060 0.74633 0.94902 0.92934 0.92704 0.88977 0.91516 0.91669 0.92725 0.92482 0.92693 0.90364 0.85512 0.85842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -5.00 10.69 -35.23 -0.38 -5.38 16 3 C 0.11 1.19 6.06 36.01 0.22 1.41 16 4 C -0.12 -1.62 5.51 -104.58 -0.58 -2.20 16 5 C -0.07 -1.09 9.69 -39.61 -0.38 -1.48 16 6 C -0.13 -2.15 8.68 -39.38 -0.34 -2.49 16 7 C 0.17 2.74 6.35 -83.75 -0.53 2.21 16 8 N -0.66 -10.88 5.33 -10.29 -0.05 -10.94 16 9 C 0.49 9.86 7.49 -11.63 -0.09 9.78 16 10 O -0.43 -10.00 9.54 5.48 0.05 -9.95 16 11 C 0.51 10.41 7.67 -11.63 -0.09 10.32 16 12 O -0.56 -11.27 15.83 5.49 0.09 -11.18 16 13 N -0.55 -11.24 2.38 -168.01 -0.40 -11.64 16 14 C 0.20 4.54 3.18 -5.19 -0.02 4.52 16 15 C -0.51 -13.82 7.38 -34.44 -0.25 -14.08 16 16 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 17 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 18 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 19 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 23 C 0.13 2.29 3.25 -67.93 -0.22 2.07 16 24 C -0.16 -2.33 9.10 37.16 0.34 -1.99 16 25 C -0.15 -2.66 8.92 37.15 0.33 -2.33 16 26 C -0.15 -2.07 9.95 -39.38 -0.39 -2.47 16 27 C -0.08 -0.97 9.69 -39.61 -0.38 -1.36 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 34 H 0.14 2.60 6.12 -52.49 -0.32 2.27 16 35 H 0.42 5.86 8.28 -40.82 -0.34 5.52 16 36 H 0.03 0.74 5.26 -51.93 -0.27 0.46 16 37 H 0.05 1.25 5.29 -51.93 -0.27 0.98 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 40 H 0.07 1.03 6.50 -51.93 -0.34 0.69 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.51 7.30 -51.93 -0.38 1.13 16 46 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 47 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -33.16 384.70 -7.10 -40.26 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.94 Total: 7.44 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.37 Total: 5.49 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.32 Total: -49.13 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.24 Total: -26.51 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.16 -7.10 -40.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773643277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.462 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds