Wall clock time and date at job start Tue Mar 31 2020 18:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00057 * 2 1 4 4 C 1.50707 * 109.47317 * 180.02562 * 3 2 1 5 5 C 1.38294 * 119.92196 * 269.72477 * 4 3 2 6 6 C 1.38096 * 120.07484 * 179.76416 * 5 4 3 7 7 C 1.38933 * 119.92104 * 0.53542 * 6 5 4 8 8 N 1.39726 * 120.07554 * 179.70506 * 7 6 5 9 9 C 1.34777 * 119.99787 * 29.37647 * 8 7 6 10 10 O 1.21372 * 120.00465 * 5.44525 * 9 8 7 11 11 C 1.49358 * 119.99594 * 185.44697 * 9 8 7 12 12 O 1.21363 * 120.00174 * 0.83952 * 11 9 8 13 13 N 1.34771 * 119.99877 * 180.83758 * 11 9 8 14 14 C 1.46506 * 120.00067 * 354.67512 * 13 11 9 15 15 C 1.50702 * 109.47142 * 83.14485 * 14 13 11 16 16 H 1.08004 * 119.99522 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00184 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00243 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99825 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47438 * 89.99479 * 19 17 15 21 21 H 1.48494 * 109.47251 * 209.99850 * 19 17 15 22 22 H 1.48499 * 109.46902 * 329.99716 * 19 17 15 23 23 C 1.46503 * 120.00207 * 174.66876 * 13 11 9 24 24 C 1.53004 * 109.46768 * 124.58736 * 23 13 11 25 25 C 1.52994 * 109.47652 * 244.59314 * 23 13 11 26 26 C 1.38932 * 119.84763 * 359.71509 * 7 6 5 27 27 C 1.38090 * 119.92764 * 0.02562 * 26 7 6 28 28 H 1.08997 * 109.47139 * 60.00398 * 1 2 3 29 29 H 1.09001 * 109.46828 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47030 * 299.99987 * 1 2 3 31 31 H 1.08998 * 109.47558 * 299.99893 * 3 2 1 32 32 H 1.08997 * 109.47293 * 59.99695 * 3 2 1 33 33 H 1.08005 * 119.96084 * 0.02562 * 5 4 3 34 34 H 1.07999 * 120.03862 * 180.23411 * 6 5 4 35 35 H 0.96996 * 119.99511 * 209.38286 * 8 7 6 36 36 H 1.09000 * 109.46915 * 203.14120 * 14 13 11 37 37 H 1.08993 * 109.46856 * 323.14245 * 14 13 11 38 38 H 0.96995 * 120.00427 * 180.02562 * 18 17 15 39 39 H 1.09004 * 109.46789 * 4.59655 * 23 13 11 40 40 H 1.09004 * 109.46715 * 60.00873 * 24 23 13 41 41 H 1.09007 * 109.46806 * 180.02562 * 24 23 13 42 42 H 1.09003 * 109.47428 * 300.00531 * 24 23 13 43 43 H 1.09001 * 109.47186 * 59.99459 * 25 23 13 44 44 H 1.08997 * 109.47022 * 180.02562 * 25 23 13 45 45 H 1.09004 * 109.46871 * 299.99708 * 25 23 13 46 46 H 1.08005 * 120.03714 * 179.97438 * 26 7 6 47 47 H 1.07999 * 119.96748 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2012 1.1375 1.1977 6 6 5.5774 1.0236 1.2008 7 6 6.2711 0.9694 -0.0018 8 7 7.6641 0.8604 -0.0024 9 6 8.2916 0.2369 1.0144 10 8 7.6442 -0.3157 1.8796 11 6 9.7839 0.2260 1.0765 12 8 10.4310 0.7916 0.2197 13 7 10.4117 -0.4119 2.0842 14 6 9.6334 -0.9942 3.1803 15 6 9.1305 -2.3548 2.7718 16 1 9.3667 -2.7464 1.7933 17 6 8.3690 -3.0998 3.6471 18 7 7.9297 -4.2869 3.2904 19 14 7.9599 -2.4221 5.3391 20 1 6.6881 -1.6584 5.2723 21 1 7.8132 -3.5449 6.2998 22 1 9.0533 -1.5243 5.7902 23 6 11.8725 -0.5231 2.0834 24 6 12.4282 0.0493 3.3890 25 6 12.2720 -1.9948 1.9607 26 6 5.5764 1.0241 -1.2037 27 6 4.1998 1.1325 -1.1996 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 1.6886 1.8464 0.8899 33 1 3.6617 1.1842 2.1321 34 1 6.1143 0.9817 2.1369 35 1 8.1794 1.2335 -0.7345 36 1 10.2651 -1.0904 4.0633 37 1 8.7864 -0.3472 3.4082 38 1 7.3937 -4.8108 3.9060 39 1 12.2789 0.0352 1.2399 40 1 12.0218 -0.5091 4.2324 41 1 13.5151 -0.0331 3.3882 42 1 12.1436 1.0978 3.4763 43 1 11.8760 -2.4025 1.0306 44 1 13.3588 -2.0775 1.9606 45 1 11.8656 -2.5531 2.8042 46 1 6.1126 0.9826 -2.1404 47 1 3.6592 1.1755 -2.1335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773643277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:59 Heat of formation + Delta-G solvation = -88.117365 kcal Electronic energy + Delta-G solvation = -29290.887927 eV Core-core repulsion = 25246.039048 eV Total energy + Delta-G solvation = -4044.848879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17658 -40.71028 -39.50189 -38.41723 -37.85741 -35.91452 -34.75372 -33.07329 -31.96938 -31.94050 -29.84130 -28.16682 -28.07498 -26.72444 -25.32967 -24.52995 -24.07713 -22.66004 -21.60371 -20.43007 -19.10216 -19.06366 -18.39733 -17.90801 -17.34007 -17.20585 -17.00745 -16.68569 -16.50373 -16.05247 -15.53251 -15.44868 -15.20920 -14.97197 -14.94074 -14.49569 -14.46467 -14.32246 -14.00871 -13.81969 -13.64585 -13.39938 -13.12283 -13.02186 -12.79789 -12.70344 -12.48277 -12.38682 -12.34868 -12.11898 -12.04871 -11.94651 -11.72637 -11.51788 -11.38386 -10.72345 -10.61996 -10.30048 -9.89336 -9.64726 -9.11136 -8.22400 -6.21663 -0.03723 0.42975 0.62200 1.30681 1.37043 1.40447 1.45382 2.15061 2.38358 2.49760 2.65445 3.15448 3.24443 3.32481 3.84726 3.93852 3.96887 4.05073 4.18922 4.24195 4.35395 4.36804 4.45029 4.51679 4.52556 4.56681 4.60534 4.70835 4.80094 4.83376 4.88087 4.89977 4.96737 5.03554 5.05539 5.22065 5.26310 5.33396 5.42030 5.43011 5.52297 5.55184 5.60638 5.99463 6.08177 6.13604 6.26326 6.39656 6.73878 6.74694 7.00966 7.38424 8.94843 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012116 B = 0.003619 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.467534 B = 7734.293653 C = 9349.477531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.107 3.893 4 C -0.120 4.120 5 C -0.087 4.087 6 C -0.151 4.151 7 C 0.141 3.859 8 N -0.643 5.643 9 C 0.488 3.512 10 O -0.473 6.473 11 C 0.508 3.492 12 O -0.556 6.556 13 N -0.556 5.556 14 C 0.211 3.789 15 C -0.492 4.492 16 H 0.026 0.974 17 C 0.021 3.979 18 N -0.949 5.949 19 Si 0.932 3.068 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.236 1.236 23 C 0.124 3.876 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.075 4.075 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.428 0.572 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.262 0.738 39 H 0.099 0.901 40 H 0.056 0.944 41 H 0.098 0.902 42 H 0.060 0.940 43 H 0.030 0.970 44 H 0.094 0.906 45 H 0.052 0.948 46 H 0.154 0.846 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.115 15.474 -6.036 17.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C 0.031 3.969 4 C -0.121 4.121 5 C -0.106 4.106 6 C -0.171 4.171 7 C 0.047 3.953 8 N -0.291 5.291 9 C 0.270 3.730 10 O -0.344 6.344 11 C 0.290 3.710 12 O -0.438 6.438 13 N -0.286 5.286 14 C 0.090 3.910 15 C -0.531 4.531 16 H 0.044 0.956 17 C -0.177 4.177 18 N -0.591 5.591 19 Si 0.756 3.244 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.159 1.159 23 C 0.022 3.978 24 C -0.210 4.210 25 C -0.206 4.206 26 C -0.167 4.167 27 C -0.093 4.093 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.267 0.733 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.172 0.828 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.114 15.039 -5.709 17.209 hybrid contribution -0.368 -0.279 0.451 0.646 sum -6.482 14.760 -5.258 16.956 Atomic orbital electron populations 1.22929 0.79357 1.03584 1.01228 1.87978 1.21565 1.28702 1.95650 1.21401 0.88260 0.84741 1.02500 1.19859 0.95459 1.03559 0.93233 1.21065 0.92906 0.97767 0.98815 1.21224 0.95365 1.02923 0.97590 1.18046 0.82144 0.99904 0.95196 1.43086 1.05470 1.55758 1.24800 1.20467 0.89652 0.79632 0.83293 1.90911 1.67141 1.38839 1.37530 1.19856 0.88114 0.80340 0.82676 1.90636 1.67354 1.46177 1.39592 1.48092 1.08156 1.50479 1.21866 1.19960 0.91669 0.93403 0.85965 1.21132 1.31338 1.00053 1.00591 0.95581 1.25545 0.95028 0.94731 1.02360 1.70037 1.37927 1.13166 1.37956 0.85952 0.79990 0.78587 0.79841 1.20533 1.21061 1.15866 1.21403 0.77587 0.97762 1.01016 1.22110 1.02605 1.00800 0.95512 1.22029 1.02081 0.94970 1.01477 1.21150 0.94934 1.04245 0.96359 1.21150 0.92938 0.96756 0.98498 0.92261 0.89354 0.93046 0.89930 0.91368 0.85003 0.86564 0.73312 0.93283 0.93256 0.92880 0.88333 0.92452 0.88328 0.92139 0.95047 0.88768 0.92879 0.82833 0.82438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.18 10.69 -148.98 -1.59 -11.77 16 3 C 0.11 2.09 6.06 71.24 0.43 2.52 16 4 C -0.12 -3.02 5.51 -19.83 -0.11 -3.13 16 5 C -0.09 -2.58 9.69 22.25 0.22 -2.37 16 6 C -0.15 -5.26 8.68 22.40 0.19 -5.07 16 7 C 0.14 4.57 6.35 38.22 0.24 4.82 16 8 N -0.64 -21.50 5.33 -304.83 -1.63 -23.13 16 9 C 0.49 20.22 7.49 87.24 0.65 20.88 16 10 O -0.47 -22.93 9.54 -3.32 -0.03 -22.97 16 11 C 0.51 20.88 7.67 87.24 0.67 21.55 16 12 O -0.56 -22.22 15.83 -3.29 -0.05 -22.27 16 13 N -0.56 -22.81 2.38 -803.81 -1.91 -24.72 16 14 C 0.21 9.77 3.18 85.63 0.27 10.04 16 15 C -0.49 -27.76 7.38 25.60 0.19 -27.57 16 16 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 17 C 0.02 1.20 5.47 84.66 0.46 1.66 16 18 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 19 Si 0.93 44.57 27.47 68.60 1.88 46.45 16 20 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.24 -9.93 6.54 99.48 0.65 -9.28 16 23 C 0.12 4.15 3.25 44.99 0.15 4.29 16 24 C -0.15 -4.04 9.10 71.98 0.66 -3.38 16 25 C -0.15 -5.02 8.92 71.98 0.64 -4.38 16 26 C -0.15 -3.71 9.95 22.40 0.22 -3.49 16 27 C -0.08 -1.71 9.69 22.25 0.22 -1.49 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 32 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.12 4.59 6.12 -2.91 -0.02 4.57 16 35 H 0.43 11.89 8.28 -92.71 -0.77 11.12 16 36 H 0.05 2.13 5.26 -2.39 -0.01 2.12 16 37 H 0.05 2.38 5.29 -2.39 -0.01 2.36 16 38 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 39 H 0.10 3.19 6.91 -2.38 -0.02 3.18 16 40 H 0.06 1.63 6.50 -2.38 -0.02 1.62 16 41 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.05 2.06 7.30 -2.38 -0.02 2.04 16 46 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 47 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -75.84 384.70 3.49 -72.35 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.17 Total: 29.63 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 6.35 Total: 16.52 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -3.24 Total: -107.93 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -1.68 Total: -57.01 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -75.84 3.49 -72.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773643277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.768 kcal (2) G-P(sol) polarization free energy of solvation -75.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds