Wall clock time and date at job start Tue Mar 31 2020 17:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47016 * 2 1 4 4 H 1.08996 * 109.46597 * 305.63401 * 3 2 1 5 5 N 1.46898 * 109.47131 * 185.63276 * 3 2 1 6 6 C 1.46899 * 110.99881 * 85.50428 * 5 3 2 7 7 C 1.50704 * 109.47145 * 185.44976 * 6 5 3 8 8 O 1.21280 * 119.99721 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00062 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99758 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46922 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00500 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99969 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99733 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99858 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47322 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47369 * 119.99790 * 15 13 11 18 18 H 1.48505 * 109.46669 * 239.99504 * 15 13 11 19 19 C 1.50696 * 109.47029 * 65.63284 * 3 2 1 20 20 C 1.38254 * 119.94650 * 79.72571 * 19 3 2 21 21 C 1.38194 * 120.11538 * 179.77780 * 20 19 3 22 22 C 1.38699 * 120.06447 * 0.56135 * 21 20 19 23 23 C 1.38969 * 119.82454 * 359.62876 * 22 21 20 24 24 C 1.38201 * 119.94305 * 260.00261 * 19 3 2 25 25 O 1.36105 * 120.78844 * 180.26733 * 23 22 21 26 26 C 1.43171 * 116.71481 * 342.81030 * 25 23 22 27 27 C 1.53474 * 108.25192 * 46.16356 * 26 25 23 28 28 O 1.36111 * 119.39489 * 179.53864 * 22 21 20 29 29 H 1.09004 * 109.47128 * 54.00514 * 1 2 3 30 30 H 1.08999 * 109.46786 * 174.00174 * 1 2 3 31 31 H 1.08998 * 109.47550 * 294.00131 * 1 2 3 32 32 H 1.09004 * 109.47368 * 240.00145 * 2 1 3 33 33 H 1.09001 * 109.46812 * 119.99811 * 2 1 3 34 34 H 1.00894 * 111.00058 * 209.45859 * 5 3 2 35 35 H 1.08998 * 109.47358 * 305.45122 * 6 5 3 36 36 H 1.09000 * 109.47275 * 65.44884 * 6 5 3 37 37 H 0.97001 * 119.99883 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.47347 * 300.00193 * 10 9 7 39 39 H 1.09000 * 109.47177 * 59.99889 * 10 9 7 40 40 H 0.97007 * 119.99372 * 180.02562 * 14 13 11 41 41 H 1.08007 * 119.94018 * 0.03511 * 20 19 3 42 42 H 1.08001 * 119.96786 * 180.29671 * 21 20 19 43 43 H 1.08000 * 119.96516 * 359.97438 * 24 19 3 44 44 H 1.08998 * 109.71094 * 165.85520 * 26 25 23 45 45 H 1.09008 * 109.70859 * 286.47839 * 26 25 23 46 46 H 1.09000 * 109.70836 * 59.94899 * 27 26 25 47 47 H 1.08999 * 109.70994 * 180.57742 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5966 1.9846 -0.8352 5 7 3.5027 1.4449 -0.1359 6 6 3.9001 1.3829 -1.5488 7 6 5.3985 1.2522 -1.6438 8 8 6.0691 1.2138 -0.6340 9 7 5.9932 1.1779 -2.8510 10 6 7.4498 1.0513 -2.9433 11 6 7.8577 0.9890 -4.3927 12 1 7.1070 1.0382 -5.1676 13 6 9.1892 0.8680 -4.7296 14 7 10.1033 0.8075 -3.7860 15 14 9.6948 0.7914 -6.5263 16 1 8.4864 0.8792 -7.3848 17 1 10.6041 1.9245 -6.8334 18 1 10.3960 -0.4911 -6.7889 19 6 1.6547 2.1116 1.2942 20 6 2.3958 1.8799 2.4381 21 6 2.0484 2.4951 3.6258 22 6 0.9479 3.3378 3.6759 23 6 0.2006 3.5677 2.5270 24 6 0.5578 2.9511 1.3369 25 8 -0.8797 4.3952 2.5526 26 6 -1.4261 4.7006 3.8402 27 6 -0.2676 5.0563 4.7819 28 8 0.6124 3.9292 4.8550 29 1 -0.3633 0.6040 -0.8315 30 1 -0.3633 -1.0220 -0.1074 31 1 -0.3634 0.4180 0.9388 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9068 2.2500 0.3184 35 1 3.4295 0.5208 -2.0212 36 1 3.5820 2.2938 -2.0560 37 1 5.4568 1.2089 -3.6586 38 1 7.9201 1.9136 -2.4707 39 1 7.7682 0.1405 -2.4363 40 1 11.0402 0.7227 -4.0231 41 1 3.2502 1.2202 2.4025 42 1 2.6318 2.3162 4.5169 43 1 -0.0218 3.1272 0.4429 44 1 -2.1071 5.5478 3.7590 45 1 -1.9616 3.8337 4.2274 46 1 0.2718 5.9192 4.3914 47 1 -0.6571 5.2836 5.7742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000775202556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:10 Heat of formation + Delta-G solvation = -90.253133 kcal Electronic energy + Delta-G solvation = -28014.495569 eV Core-core repulsion = 23969.554077 eV Total energy + Delta-G solvation = -4044.941493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54220 -39.30057 -38.46757 -37.53885 -36.09914 -34.12974 -32.80198 -32.26815 -31.41562 -30.81169 -29.14845 -27.86331 -26.36501 -25.12138 -24.16662 -22.97108 -22.30596 -21.77227 -20.05293 -19.66605 -18.87493 -17.64859 -17.46593 -17.00357 -16.04143 -15.74364 -15.66065 -15.48169 -15.24837 -14.98298 -14.73025 -14.54111 -14.45029 -14.16823 -14.09680 -13.92603 -13.59997 -13.18995 -13.04819 -12.73614 -12.33495 -12.10028 -11.99197 -11.88137 -11.65661 -11.54204 -11.45939 -11.41361 -11.01253 -10.93716 -10.89599 -10.86640 -10.59528 -10.30489 -9.36142 -9.02116 -8.82021 -8.72070 -8.38281 -8.23990 -7.83257 -6.15324 -4.22013 1.03241 1.11798 2.68645 2.88959 3.24213 3.31191 3.34226 3.43206 3.45804 3.82228 3.84590 4.30789 4.33953 4.38419 4.46693 4.50150 4.54092 4.81963 4.92988 5.02259 5.04575 5.12449 5.16781 5.20748 5.26553 5.33152 5.34285 5.49235 5.51187 5.62675 5.64579 5.73114 5.89072 5.91606 5.96675 6.08859 6.23693 6.34812 6.44839 6.60097 6.95094 7.13409 7.34234 7.40072 7.48528 7.54983 7.69876 7.99217 8.67043 8.81381 9.16071 9.44840 10.94898 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.001920 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.802294 B =14578.129655 C =15038.569583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.132 3.868 4 H 0.054 0.946 5 N -0.664 5.664 6 C 0.039 3.961 7 C 0.497 3.503 8 O -0.542 6.542 9 N -0.716 5.716 10 C 0.251 3.749 11 C -0.542 4.542 12 H 0.063 0.937 13 C 0.062 3.938 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.081 4.081 20 C -0.091 4.091 21 C -0.113 4.113 22 C 0.047 3.953 23 C 0.046 3.954 24 C -0.105 4.105 25 O -0.309 6.309 26 C 0.021 3.979 27 C 0.020 3.980 28 O -0.309 6.309 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.353 0.647 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.389 0.611 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.265 0.735 41 H 0.146 0.854 42 H 0.135 0.865 43 H 0.132 0.868 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.597 6.137 14.117 30.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C 0.023 3.977 4 H 0.071 0.929 5 N -0.297 5.297 6 C -0.093 4.093 7 C 0.281 3.719 8 O -0.419 6.419 9 N -0.365 5.365 10 C 0.130 3.870 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.141 4.141 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.082 4.082 20 C -0.109 4.109 21 C -0.132 4.132 22 C 0.002 3.998 23 C 0.001 3.999 24 C -0.124 4.124 25 O -0.224 6.224 26 C -0.055 4.055 27 C -0.055 4.055 28 O -0.223 6.223 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.173 0.827 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.222 0.778 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.164 0.836 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -25.843 5.460 14.995 30.373 hybrid contribution -0.261 1.083 -1.507 1.874 sum -26.103 6.543 13.488 30.102 Atomic orbital electron populations 1.21797 0.95885 1.01569 1.01753 1.21529 0.94884 0.95048 1.03238 1.20463 0.88279 0.95977 0.93013 0.92859 1.60161 1.06948 1.49542 1.13074 1.21892 0.94885 1.02158 0.90385 1.20326 0.89195 0.77989 0.84377 1.90663 1.65645 1.50159 1.35465 1.46446 1.11099 1.72405 1.06561 1.19081 0.73387 0.97510 0.97031 1.21277 0.92806 1.52544 0.91449 0.91868 1.24966 0.96319 0.94780 0.98052 1.69992 1.01228 1.48695 1.32336 0.86362 0.78633 0.77750 0.84160 1.19656 1.20831 1.20804 1.19627 0.95406 0.97340 0.95805 1.20972 1.00072 0.99343 0.90551 1.20504 0.94875 0.98341 0.99453 1.18934 0.96497 0.99262 0.85089 1.18775 0.89615 0.96920 0.94590 1.20244 0.98584 0.97299 0.96254 1.86302 1.43112 1.63034 1.29915 1.23606 0.95767 1.02959 0.83118 1.23616 0.91164 0.88176 1.02592 1.86317 1.64275 1.44449 1.27280 0.92939 0.92645 0.92669 0.91370 0.90934 0.82665 0.88501 0.92765 0.77843 0.95646 0.95535 0.92522 0.83639 0.84680 0.85011 0.86179 0.90572 0.90498 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.49 37.16 0.35 -0.93 16 2 C -0.11 -1.09 5.63 -26.73 -0.15 -1.24 16 3 C 0.13 1.40 2.28 -68.86 -0.16 1.24 16 4 H 0.05 0.52 7.71 -51.93 -0.40 0.12 16 5 N -0.66 -8.82 5.23 -109.22 -0.57 -9.39 16 6 C 0.04 0.54 5.94 -4.97 -0.03 0.51 16 7 C 0.50 9.78 7.88 -10.98 -0.09 9.69 16 8 O -0.54 -12.98 16.32 5.56 0.09 -12.89 16 9 N -0.72 -14.95 5.55 -61.47 -0.34 -15.29 16 10 C 0.25 6.67 5.43 -5.19 -0.03 6.64 16 11 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 15 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 C -0.08 -0.86 4.02 -104.63 -0.42 -1.29 16 20 C -0.09 -1.00 8.98 -39.59 -0.36 -1.36 16 21 C -0.11 -1.23 9.96 -39.43 -0.39 -1.62 16 22 C 0.05 0.53 6.49 -39.14 -0.25 0.27 16 23 C 0.05 0.50 6.49 -39.14 -0.25 0.25 16 24 C -0.10 -1.10 8.86 -39.42 -0.35 -1.45 16 25 O -0.31 -3.09 10.42 -32.86 -0.34 -3.43 16 26 C 0.02 0.13 7.26 37.40 0.27 0.40 16 27 C 0.02 0.13 7.26 37.40 0.27 0.40 16 28 O -0.31 -3.15 10.42 -32.88 -0.34 -3.49 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.49 7.15 -51.93 -0.37 0.12 16 32 H 0.07 0.70 7.32 -51.93 -0.38 0.32 16 33 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 34 H 0.35 4.97 7.88 -39.30 -0.31 4.66 16 35 H 0.10 1.17 7.30 -51.93 -0.38 0.79 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 41 H 0.15 1.65 7.72 -52.48 -0.41 1.25 16 42 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.13 1.22 8.03 -52.49 -0.42 0.80 16 44 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -33.90 389.60 -9.11 -43.01 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.19 Total: 7.11 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.00 Total: -1.91 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.18 Total: -50.15 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.59 Total: -19.82 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.90 -9.11 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775202556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.240 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds