Wall clock time and date at job start Tue Mar 31 2020 17:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47016 * 2 1 4 4 H 1.08996 * 109.46597 * 305.63401 * 3 2 1 5 5 N 1.46898 * 109.47131 * 185.63276 * 3 2 1 6 6 C 1.46899 * 110.99881 * 85.50428 * 5 3 2 7 7 C 1.50704 * 109.47145 * 185.44976 * 6 5 3 8 8 O 1.21280 * 119.99721 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00062 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99758 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46922 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00500 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99969 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99733 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99858 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47322 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47369 * 119.99790 * 15 13 11 18 18 H 1.48505 * 109.46669 * 239.99504 * 15 13 11 19 19 C 1.50696 * 109.47029 * 65.63284 * 3 2 1 20 20 C 1.38254 * 119.94650 * 79.72571 * 19 3 2 21 21 C 1.38194 * 120.11538 * 179.77780 * 20 19 3 22 22 C 1.38699 * 120.06447 * 0.56135 * 21 20 19 23 23 C 1.38969 * 119.82454 * 359.62876 * 22 21 20 24 24 C 1.38201 * 119.94305 * 260.00261 * 19 3 2 25 25 O 1.36105 * 120.78844 * 180.26733 * 23 22 21 26 26 C 1.43171 * 116.71481 * 342.81030 * 25 23 22 27 27 C 1.53474 * 108.25192 * 46.16356 * 26 25 23 28 28 O 1.36111 * 119.39489 * 179.53864 * 22 21 20 29 29 H 1.09004 * 109.47128 * 54.00514 * 1 2 3 30 30 H 1.08999 * 109.46786 * 174.00174 * 1 2 3 31 31 H 1.08998 * 109.47550 * 294.00131 * 1 2 3 32 32 H 1.09004 * 109.47368 * 240.00145 * 2 1 3 33 33 H 1.09001 * 109.46812 * 119.99811 * 2 1 3 34 34 H 1.00894 * 111.00058 * 209.45859 * 5 3 2 35 35 H 1.08998 * 109.47358 * 305.45122 * 6 5 3 36 36 H 1.09000 * 109.47275 * 65.44884 * 6 5 3 37 37 H 0.97001 * 119.99883 * 0.02562 * 9 7 6 38 38 H 1.08998 * 109.47347 * 300.00193 * 10 9 7 39 39 H 1.09000 * 109.47177 * 59.99889 * 10 9 7 40 40 H 0.97007 * 119.99372 * 180.02562 * 14 13 11 41 41 H 1.08007 * 119.94018 * 0.03511 * 20 19 3 42 42 H 1.08001 * 119.96786 * 180.29671 * 21 20 19 43 43 H 1.08000 * 119.96516 * 359.97438 * 24 19 3 44 44 H 1.08998 * 109.71094 * 165.85520 * 26 25 23 45 45 H 1.09008 * 109.70859 * 286.47839 * 26 25 23 46 46 H 1.09000 * 109.70836 * 59.94899 * 27 26 25 47 47 H 1.08999 * 109.70994 * 180.57742 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5966 1.9846 -0.8352 5 7 3.5027 1.4449 -0.1359 6 6 3.9001 1.3829 -1.5488 7 6 5.3985 1.2522 -1.6438 8 8 6.0691 1.2138 -0.6340 9 7 5.9932 1.1779 -2.8510 10 6 7.4498 1.0513 -2.9433 11 6 7.8577 0.9890 -4.3927 12 1 7.1070 1.0382 -5.1676 13 6 9.1892 0.8680 -4.7296 14 7 10.1033 0.8075 -3.7860 15 14 9.6948 0.7914 -6.5263 16 1 8.4864 0.8792 -7.3848 17 1 10.6041 1.9245 -6.8334 18 1 10.3960 -0.4911 -6.7889 19 6 1.6547 2.1116 1.2942 20 6 2.3958 1.8799 2.4381 21 6 2.0484 2.4951 3.6258 22 6 0.9479 3.3378 3.6759 23 6 0.2006 3.5677 2.5270 24 6 0.5578 2.9511 1.3369 25 8 -0.8797 4.3952 2.5526 26 6 -1.4261 4.7006 3.8402 27 6 -0.2676 5.0563 4.7819 28 8 0.6124 3.9292 4.8550 29 1 -0.3633 0.6040 -0.8315 30 1 -0.3633 -1.0220 -0.1074 31 1 -0.3634 0.4180 0.9388 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9068 2.2500 0.3184 35 1 3.4295 0.5208 -2.0212 36 1 3.5820 2.2938 -2.0560 37 1 5.4568 1.2089 -3.6586 38 1 7.9201 1.9136 -2.4707 39 1 7.7682 0.1405 -2.4363 40 1 11.0402 0.7227 -4.0231 41 1 3.2502 1.2202 2.4025 42 1 2.6318 2.3162 4.5169 43 1 -0.0218 3.1272 0.4429 44 1 -2.1071 5.5478 3.7590 45 1 -1.9616 3.8337 4.2274 46 1 0.2718 5.9192 4.3914 47 1 -0.6571 5.2836 5.7742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000775202556.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:09 Heat of formation + Delta-G solvation = -114.712619 kcal Electronic energy + Delta-G solvation = -28015.556212 eV Core-core repulsion = 23969.554077 eV Total energy + Delta-G solvation = -4046.002136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24909 -40.57797 -39.64564 -38.23833 -37.03802 -36.05671 -34.32346 -33.72346 -32.05796 -31.59077 -30.16654 -29.36089 -27.63739 -25.98128 -25.13739 -24.19621 -23.67654 -22.54448 -21.33621 -20.80227 -19.65138 -18.99621 -18.23802 -18.11167 -17.47400 -17.13729 -16.82591 -16.49982 -16.39828 -15.96555 -15.73480 -15.66992 -15.47419 -15.31978 -14.86180 -14.82538 -14.66504 -14.42265 -14.09987 -13.92115 -13.83806 -13.73926 -13.02885 -12.89094 -12.84272 -12.73571 -12.65718 -12.40880 -12.27251 -12.20656 -11.99173 -11.78123 -11.58765 -11.44080 -11.34784 -10.80264 -10.68178 -9.78485 -9.61847 -9.37467 -9.03482 -8.28071 -6.44448 0.22163 0.30411 1.43927 1.45100 1.58579 1.85063 2.03885 2.25256 2.32477 2.50403 2.69057 3.06826 3.27640 3.30648 3.66145 3.68043 3.94280 4.01434 4.05948 4.12166 4.24912 4.33185 4.36022 4.41665 4.42643 4.49321 4.57316 4.58190 4.63245 4.68428 4.86831 4.99944 5.10870 5.13688 5.13886 5.25250 5.26931 5.33727 5.47771 5.50294 5.51960 5.65333 5.72871 5.87146 5.90096 6.04088 6.33414 6.40613 6.67642 6.99163 7.25294 7.57432 8.84331 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022561 B = 0.001920 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.802294 B =14578.129655 C =15038.569583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.138 3.862 4 H 0.072 0.928 5 N -0.680 5.680 6 C 0.056 3.944 7 C 0.493 3.507 8 O -0.591 6.591 9 N -0.710 5.710 10 C 0.267 3.733 11 C -0.554 4.554 12 H 0.085 0.915 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.252 1.252 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.082 4.082 20 C -0.100 4.100 21 C -0.124 4.124 22 C 0.038 3.962 23 C 0.039 3.961 24 C -0.106 4.106 25 O -0.322 6.322 26 C 0.016 3.984 27 C 0.013 3.987 28 O -0.325 6.325 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.346 0.654 35 H 0.124 0.876 36 H 0.086 0.914 37 H 0.408 0.592 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.268 0.732 41 H 0.135 0.865 42 H 0.140 0.860 43 H 0.147 0.853 44 H 0.153 0.847 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.400 6.873 12.347 32.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C 0.030 3.970 4 H 0.090 0.910 5 N -0.313 5.313 6 C -0.076 4.076 7 C 0.280 3.720 8 O -0.471 6.471 9 N -0.361 5.361 10 C 0.144 3.856 11 C -0.592 4.592 12 H 0.103 0.897 13 C -0.198 4.198 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.175 1.175 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.083 4.083 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.008 4.008 23 C -0.006 4.006 24 C -0.125 4.125 25 O -0.237 6.237 26 C -0.059 4.059 27 C -0.062 4.062 28 O -0.241 6.241 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.166 0.834 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.244 0.756 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.077 0.923 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.720 6.202 13.215 32.217 hybrid contribution 0.547 0.904 -0.800 1.325 sum -28.173 7.105 12.415 31.597 Atomic orbital electron populations 1.21741 0.94467 1.02230 1.01934 1.21518 0.96046 0.94448 1.02546 1.20489 0.86454 0.96567 0.93529 0.90993 1.60142 1.08827 1.49579 1.12713 1.21807 0.89653 1.04741 0.91403 1.21437 0.91778 0.75860 0.82910 1.90642 1.67498 1.51945 1.37039 1.46178 1.08918 1.72766 1.08261 1.18499 0.76715 0.93779 0.96583 1.21674 0.93629 1.52125 0.91776 0.89696 1.26097 0.96351 0.93992 1.03405 1.70156 1.01788 1.49809 1.35278 0.85098 0.78711 0.77616 0.77700 1.17519 1.20540 1.20528 1.19624 0.95524 0.97504 0.95600 1.20931 1.00117 0.99630 0.91130 1.20625 0.95316 0.98639 0.99674 1.19054 0.96588 0.99422 0.85687 1.18920 0.90023 0.97038 0.94613 1.20390 0.98454 0.96910 0.96713 1.86273 1.42666 1.62656 1.32142 1.23939 0.95916 1.04418 0.81619 1.23957 0.90711 0.86872 1.04634 1.86285 1.65184 1.45592 1.27003 0.91694 0.92009 0.93268 0.91279 0.92437 0.83443 0.85863 0.89631 0.75602 0.99658 0.99686 0.92310 0.84672 0.84224 0.83568 0.82894 0.90164 0.90530 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.49 71.98 0.68 -1.48 16 2 C -0.11 -1.98 5.63 30.60 0.17 -1.81 16 3 C 0.14 2.69 2.28 44.17 0.10 2.79 16 4 H 0.07 1.17 7.71 -2.39 -0.02 1.15 16 5 N -0.68 -17.48 5.23 -499.46 -2.61 -20.10 16 6 C 0.06 1.43 5.94 85.56 0.51 1.94 16 7 C 0.49 19.45 7.88 87.66 0.69 20.14 16 8 O -0.59 -29.44 16.32 -3.03 -0.05 -29.49 16 9 N -0.71 -29.72 5.55 -466.79 -2.59 -32.31 16 10 C 0.27 14.79 5.43 85.63 0.46 15.25 16 11 C -0.55 -30.22 9.28 25.60 0.24 -29.99 16 12 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 13 C 0.00 0.05 5.46 84.66 0.46 0.51 16 14 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 15 Si 0.99 42.45 29.54 68.60 2.03 44.47 16 16 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 C -0.08 -1.69 4.02 -19.87 -0.08 -1.77 16 20 C -0.10 -2.26 8.98 22.26 0.20 -2.06 16 21 C -0.12 -2.78 9.96 22.37 0.22 -2.56 16 22 C 0.04 0.83 6.49 22.56 0.15 0.98 16 23 C 0.04 0.83 6.49 22.56 0.15 0.97 16 24 C -0.11 -2.08 8.86 22.37 0.20 -1.88 16 25 O -0.32 -5.94 10.42 -82.52 -0.86 -6.80 16 26 C 0.02 0.16 7.26 72.14 0.52 0.68 16 27 C 0.01 0.14 7.26 72.14 0.52 0.67 16 28 O -0.33 -6.46 10.42 -82.59 -0.86 -7.32 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.79 7.15 -2.39 -0.02 0.78 16 32 H 0.07 1.26 7.32 -2.39 -0.02 1.25 16 33 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 34 H 0.35 9.76 7.88 -89.70 -0.71 9.05 16 35 H 0.12 2.57 7.30 -2.39 -0.02 2.55 16 36 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 38 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 40 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 41 H 0.14 3.28 7.72 -2.91 -0.02 3.26 16 42 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.15 2.37 8.03 -2.91 -0.02 2.35 16 44 H 0.15 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.08 0.76 8.14 -2.38 -0.02 0.75 16 46 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.15 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -77.06 389.60 0.06 -77.00 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.48 Total: 28.54 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 5.20 Total: 2.41 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -4.92 Total: -108.81 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.77 Total: -43.61 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -77.06 0.06 -77.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000775202556.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.711 kcal (2) G-P(sol) polarization free energy of solvation -77.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds