Wall clock time and date at job start Tue Mar 31 2020 17:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47241 * 2 1 4 4 C 1.53003 * 109.46899 * 240.00228 * 2 1 3 5 5 O 1.45201 * 109.47243 * 120.00188 * 2 1 3 6 6 C 1.34231 * 116.99932 * 59.99974 * 5 2 1 7 7 O 1.20826 * 119.99831 * 0.02562 * 6 5 2 8 8 C 1.50702 * 119.99943 * 179.97438 * 6 5 2 9 9 C 1.53002 * 109.46828 * 180.02562 * 8 6 5 10 10 N 1.46497 * 109.46583 * 179.97438 * 9 8 6 11 11 N 1.40108 * 119.99689 * 179.97438 * 10 9 8 12 12 C 1.29809 * 120.00008 * 179.97438 * 11 10 9 13 13 C 1.47389 * 119.99870 * 180.02562 * 12 11 10 14 14 C 1.39793 * 120.08093 * 180.02562 * 13 12 11 15 15 C 1.37739 * 119.90759 * 180.02562 * 14 13 12 16 16 C 1.39060 * 120.08521 * 0.02562 * 15 14 13 17 17 O 1.35678 * 119.91155 * 179.97438 * 16 15 14 18 18 C 1.34812 * 116.99849 * 5.55053 * 17 16 15 19 19 H 1.08003 * 119.99914 * 354.94183 * 18 17 16 20 20 C 1.38614 * 119.99773 * 174.94478 * 18 17 16 21 21 N 1.31580 * 119.99964 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00270 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47265 * 90.00323 * 22 20 18 24 24 H 1.48506 * 109.47197 * 210.00256 * 22 20 18 25 25 H 1.48499 * 109.47463 * 330.00185 * 22 20 18 26 26 C 1.39069 * 120.18038 * 0.23761 * 16 15 14 27 27 C 1.37736 * 120.08272 * 359.48644 * 26 16 15 28 28 H 1.09003 * 109.46981 * 299.99844 * 1 2 3 29 29 H 1.08996 * 109.47148 * 59.99426 * 1 2 3 30 30 H 1.09005 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47492 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47518 * 300.00347 * 3 2 1 33 33 H 1.09003 * 109.47006 * 60.00171 * 3 2 1 34 34 H 1.08997 * 109.47120 * 300.00193 * 4 2 1 35 35 H 1.09002 * 109.47193 * 59.99841 * 4 2 1 36 36 H 1.08998 * 109.46855 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.46632 * 59.99938 * 8 6 5 38 38 H 1.08998 * 109.47016 * 299.99748 * 8 6 5 39 39 H 1.08994 * 109.47185 * 60.00178 * 9 8 6 40 40 H 1.08998 * 109.47049 * 299.99645 * 9 8 6 41 41 H 0.96992 * 120.00604 * 359.97438 * 10 9 8 42 42 H 1.08001 * 119.99610 * 0.02562 * 12 11 10 43 43 H 1.07997 * 120.05215 * 359.97438 * 14 13 12 44 44 H 1.08004 * 119.95715 * 179.97438 * 15 14 13 45 45 H 0.97001 * 120.00375 * 179.97438 * 21 20 18 46 46 H 1.07998 * 119.95783 * 179.74566 * 26 16 15 47 47 H 1.07996 * 120.04550 * 180.23058 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3378 7 8 0.9567 -2.5028 0.5077 8 6 2.1184 -2.7438 2.5435 9 6 1.5717 -4.1712 2.4738 10 7 2.0242 -4.9250 3.6456 11 7 1.6479 -6.2652 3.8044 12 6 2.0492 -6.9334 4.8424 13 6 1.6537 -8.3434 5.0092 14 6 2.0846 -9.0645 6.1267 15 6 1.7133 -10.3822 6.2787 16 6 0.9115 -10.9953 5.3222 17 8 0.5483 -12.2936 5.4753 18 6 0.9007 -12.8958 6.6288 19 1 1.5170 -12.3724 7.3448 20 6 0.4722 -14.1867 6.8957 21 7 0.8157 -14.7743 8.0218 22 14 -0.5943 -15.0916 5.6576 23 1 0.2719 -15.8406 4.7121 24 1 -1.4845 -16.0416 6.3719 25 1 -1.4181 -14.1122 4.9044 26 6 0.4854 -10.2830 4.2064 27 6 0.8476 -8.9633 4.0500 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7208 -1.2495 37 1 1.7549 -2.2590 3.4495 38 1 3.2078 -2.7728 2.5588 39 1 1.9355 -4.6557 1.5678 40 1 0.4822 -4.1426 2.4582 41 1 2.5844 -4.4965 4.3114 42 1 2.6729 -6.4561 5.5838 43 1 2.7083 -8.5894 6.8694 44 1 2.0460 -10.9401 7.1416 45 1 0.5156 -15.6775 8.2088 46 1 -0.1339 -10.7639 3.4637 47 1 0.5133 -8.4097 3.1851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783865773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:14 Heat of formation + Delta-G solvation = -49.448584 kcal Electronic energy + Delta-G solvation = -26522.271144 eV Core-core repulsion = 22479.099070 eV Total energy + Delta-G solvation = -4043.172075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29218 -39.17319 -37.82520 -37.22555 -36.22485 -34.61507 -33.73195 -32.43111 -30.46089 -30.27119 -28.06153 -27.89627 -27.87055 -25.50931 -24.32488 -22.37066 -22.02265 -21.77172 -20.16892 -19.81713 -18.00698 -17.64579 -17.37394 -16.92474 -16.85123 -16.28320 -15.75145 -15.25463 -14.72666 -14.64703 -14.49762 -14.25177 -13.99705 -13.91817 -13.73803 -13.52652 -12.96889 -12.94581 -12.69019 -12.58188 -12.47236 -12.39937 -12.37740 -12.26277 -12.20186 -11.98075 -11.75929 -11.66907 -11.18808 -11.11288 -10.85951 -10.76785 -10.67342 -10.42513 -10.20441 -9.81991 -9.40881 -8.96374 -8.29820 -8.25857 -6.96263 -6.46715 -4.11808 1.60149 1.79010 2.05097 2.18024 3.04348 3.08174 3.23140 3.24873 3.39131 4.12081 4.20614 4.22395 4.25343 4.39596 4.45194 4.56359 4.59156 4.81868 4.91846 4.99091 5.05341 5.08156 5.13725 5.20512 5.23283 5.34907 5.36439 5.40413 5.51552 5.56846 5.60985 5.75651 5.77570 5.79911 5.80842 6.07950 6.09972 6.19899 6.46158 6.57816 6.79622 7.02298 7.16520 7.23422 7.27991 7.39332 7.57327 7.76127 7.98877 8.59783 8.88060 9.49948 10.60283 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036183 B = 0.001414 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.662688 B =19790.861040 C =20357.480872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.352 6.352 6 C 0.471 3.529 7 O -0.497 6.497 8 C -0.127 4.127 9 C 0.176 3.824 10 N -0.677 5.677 11 N -0.250 5.250 12 C 0.101 3.899 13 C -0.144 4.144 14 C -0.046 4.046 15 C -0.226 4.226 16 C 0.169 3.831 17 O -0.212 6.212 18 C -0.389 4.389 19 H 0.109 0.891 20 C 0.065 3.935 21 N -0.875 5.875 22 Si 0.905 3.095 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.258 1.258 26 C -0.198 4.198 27 C -0.039 4.039 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.370 0.630 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.136 0.864 45 H 0.280 0.720 46 H 0.119 0.881 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 30.452 -12.821 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.270 6.270 6 C 0.314 3.686 7 O -0.384 6.384 8 C -0.166 4.166 9 C 0.051 3.949 10 N -0.416 5.416 11 N -0.057 5.057 12 C -0.109 4.109 13 C -0.147 4.147 14 C -0.067 4.067 15 C -0.245 4.245 16 C 0.115 3.885 17 O -0.115 6.115 18 C -0.465 4.465 19 H 0.126 0.874 20 C -0.139 4.139 21 N -0.513 5.513 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.182 1.182 26 C -0.218 4.218 27 C -0.059 4.059 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.207 0.793 42 H 0.118 0.882 43 H 0.132 0.868 44 H 0.154 0.846 45 H 0.091 0.909 46 H 0.137 0.863 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.670 30.036 -14.132 33.301 hybrid contribution 0.414 0.010 0.669 0.786 sum 3.084 30.045 -13.464 33.068 Atomic orbital electron populations 1.22502 0.93855 1.04912 1.02855 1.22217 0.94517 0.92267 0.82899 1.21858 1.02265 0.92535 1.03161 1.22502 1.01726 1.03273 0.96622 1.86537 1.69849 1.25235 1.45340 1.23208 0.77499 0.80712 0.87206 1.90629 1.34872 1.69817 1.43085 1.21482 1.04099 0.95326 0.95719 1.20520 0.99246 0.86870 0.88255 1.47678 1.60369 1.07129 1.26393 1.74247 1.17808 0.92709 1.20893 1.23921 0.98743 0.94153 0.94101 1.17893 1.07148 0.90973 0.98699 1.20822 0.97011 0.93465 0.95379 1.21163 1.05010 0.95774 1.02574 1.19303 0.91926 0.83903 0.93329 1.83551 1.69226 1.19728 1.39002 1.20810 1.32760 0.98690 0.94234 0.87382 1.24483 0.97043 0.95779 0.96636 1.69653 1.44147 1.14725 1.22740 0.86177 0.80468 0.79545 0.80743 1.19804 1.20746 1.18233 1.20183 1.07681 0.94559 0.99334 1.20833 0.94646 0.93076 0.97334 0.91946 0.90931 0.89666 0.91426 0.90254 0.91422 0.89662 0.90937 0.91946 0.87164 0.87168 0.91723 0.91714 0.79272 0.88246 0.86825 0.84627 0.90939 0.86312 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.37 37.16 0.31 -0.94 16 2 C 0.12 0.80 1.13 -90.62 -0.10 0.69 16 3 C -0.14 -0.65 8.85 37.15 0.33 -0.32 16 4 C -0.18 -1.25 8.37 37.16 0.31 -0.94 16 5 O -0.35 -2.82 9.89 -39.26 -0.39 -3.21 16 6 C 0.47 4.03 7.27 36.01 0.26 4.29 16 7 O -0.50 -5.42 11.48 -18.75 -0.22 -5.63 16 8 C -0.13 -0.83 5.93 -27.88 -0.17 -1.00 16 9 C 0.18 1.72 5.96 -4.04 -0.02 1.70 16 10 N -0.68 -7.57 6.63 -10.62 -0.07 -7.64 16 11 N -0.25 -3.66 10.61 32.15 0.34 -3.32 16 12 C 0.10 1.45 10.75 -14.68 -0.16 1.30 16 13 C -0.14 -2.43 5.87 -105.01 -0.62 -3.04 16 14 C -0.05 -0.80 9.78 -39.18 -0.38 -1.18 16 15 C -0.23 -4.68 9.15 -39.46 -0.36 -5.04 16 16 C 0.17 3.83 6.65 -38.97 -0.26 3.57 16 17 O -0.21 -5.47 8.58 0.32 0.00 -5.47 16 18 C -0.39 -10.72 9.94 30.87 0.31 -10.41 16 19 H 0.11 3.01 5.42 -52.48 -0.28 2.73 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -24.78 13.96 55.48 0.77 -24.01 16 22 Si 0.91 21.34 28.61 -169.99 -4.86 16.47 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 26 C -0.20 -3.94 9.97 -39.46 -0.39 -4.33 16 27 C -0.04 -0.69 9.57 -39.18 -0.37 -1.06 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.76 5.89 -51.93 -0.31 0.45 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.76 5.89 -51.93 -0.31 0.45 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.72 8.10 -51.93 -0.42 0.29 16 40 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.37 3.26 8.43 -182.60 -1.54 1.72 16 42 H 0.10 1.16 8.02 -52.49 -0.42 0.74 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.14 2.92 5.62 -52.48 -0.29 2.63 16 45 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 47 H 0.12 2.03 7.55 -52.49 -0.40 1.64 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -30.88 394.85 -8.06 -38.94 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.17 Total: 2.95 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.41 Total: -15.04 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 1.05 Total: -34.96 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.60 Total: -14.32 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.86 Total: 16.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.88 -8.06 -38.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783865773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.507 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds