Wall clock time and date at job start Tue Mar 31 2020 17:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47241 * 2 1 4 4 C 1.53003 * 109.46899 * 240.00228 * 2 1 3 5 5 O 1.45201 * 109.47243 * 120.00188 * 2 1 3 6 6 C 1.34231 * 116.99932 * 59.99974 * 5 2 1 7 7 O 1.20826 * 119.99831 * 0.02562 * 6 5 2 8 8 C 1.50702 * 119.99943 * 179.97438 * 6 5 2 9 9 C 1.53002 * 109.46828 * 180.02562 * 8 6 5 10 10 N 1.46497 * 109.46583 * 179.97438 * 9 8 6 11 11 N 1.40108 * 119.99689 * 179.97438 * 10 9 8 12 12 C 1.29809 * 120.00008 * 179.97438 * 11 10 9 13 13 C 1.47389 * 119.99870 * 180.02562 * 12 11 10 14 14 C 1.39793 * 120.08093 * 180.02562 * 13 12 11 15 15 C 1.37739 * 119.90759 * 180.02562 * 14 13 12 16 16 C 1.39060 * 120.08521 * 0.02562 * 15 14 13 17 17 O 1.35678 * 119.91155 * 179.97438 * 16 15 14 18 18 C 1.34812 * 116.99849 * 5.55053 * 17 16 15 19 19 H 1.08003 * 119.99914 * 354.94183 * 18 17 16 20 20 C 1.38614 * 119.99773 * 174.94478 * 18 17 16 21 21 N 1.31580 * 119.99964 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00270 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47265 * 90.00323 * 22 20 18 24 24 H 1.48506 * 109.47197 * 210.00256 * 22 20 18 25 25 H 1.48499 * 109.47463 * 330.00185 * 22 20 18 26 26 C 1.39069 * 120.18038 * 0.23761 * 16 15 14 27 27 C 1.37736 * 120.08272 * 359.48644 * 26 16 15 28 28 H 1.09003 * 109.46981 * 299.99844 * 1 2 3 29 29 H 1.08996 * 109.47148 * 59.99426 * 1 2 3 30 30 H 1.09005 * 109.47260 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47492 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47518 * 300.00347 * 3 2 1 33 33 H 1.09003 * 109.47006 * 60.00171 * 3 2 1 34 34 H 1.08997 * 109.47120 * 300.00193 * 4 2 1 35 35 H 1.09002 * 109.47193 * 59.99841 * 4 2 1 36 36 H 1.08998 * 109.46855 * 179.97438 * 4 2 1 37 37 H 1.08993 * 109.46632 * 59.99938 * 8 6 5 38 38 H 1.08998 * 109.47016 * 299.99748 * 8 6 5 39 39 H 1.08994 * 109.47185 * 60.00178 * 9 8 6 40 40 H 1.08998 * 109.47049 * 299.99645 * 9 8 6 41 41 H 0.96992 * 120.00604 * 359.97438 * 10 9 8 42 42 H 1.08001 * 119.99610 * 0.02562 * 12 11 10 43 43 H 1.07997 * 120.05215 * 359.97438 * 14 13 12 44 44 H 1.08004 * 119.95715 * 179.97438 * 15 14 13 45 45 H 0.97001 * 120.00375 * 179.97438 * 21 20 18 46 46 H 1.07998 * 119.95783 * 179.74566 * 26 16 15 47 47 H 1.07996 * 120.04550 * 180.23058 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6534 -1.9685 1.3378 7 8 0.9567 -2.5028 0.5077 8 6 2.1184 -2.7438 2.5435 9 6 1.5717 -4.1712 2.4738 10 7 2.0242 -4.9250 3.6456 11 7 1.6479 -6.2652 3.8044 12 6 2.0492 -6.9334 4.8424 13 6 1.6537 -8.3434 5.0092 14 6 2.0846 -9.0645 6.1267 15 6 1.7133 -10.3822 6.2787 16 6 0.9115 -10.9953 5.3222 17 8 0.5483 -12.2936 5.4753 18 6 0.9007 -12.8958 6.6288 19 1 1.5170 -12.3724 7.3448 20 6 0.4722 -14.1867 6.8957 21 7 0.8157 -14.7743 8.0218 22 14 -0.5943 -15.0916 5.6576 23 1 0.2719 -15.8406 4.7121 24 1 -1.4845 -16.0416 6.3719 25 1 -1.4181 -14.1122 4.9044 26 6 0.4854 -10.2830 4.2064 27 6 0.8476 -8.9633 4.0500 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2494 35 1 1.6766 -0.2074 -2.1393 36 1 3.1299 -0.7208 -1.2495 37 1 1.7549 -2.2590 3.4495 38 1 3.2078 -2.7728 2.5588 39 1 1.9355 -4.6557 1.5678 40 1 0.4822 -4.1426 2.4582 41 1 2.5844 -4.4965 4.3114 42 1 2.6729 -6.4561 5.5838 43 1 2.7083 -8.5894 6.8694 44 1 2.0460 -10.9401 7.1416 45 1 0.5156 -15.6775 8.2088 46 1 -0.1339 -10.7639 3.4637 47 1 0.5133 -8.4097 3.1851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783865773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:13 Heat of formation + Delta-G solvation = -66.966284 kcal Electronic energy + Delta-G solvation = -26523.030769 eV Core-core repulsion = 22479.099070 eV Total energy + Delta-G solvation = -4043.931699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.91756 -40.83988 -38.79614 -38.35143 -37.42278 -35.22715 -34.71793 -34.33992 -31.90117 -31.54359 -29.27325 -28.39740 -28.30876 -27.33841 -25.25393 -23.82340 -23.40505 -22.49162 -21.36709 -20.60800 -19.78287 -19.09440 -18.34775 -17.73771 -17.48576 -17.24892 -16.95873 -16.44441 -15.88441 -15.76940 -15.69272 -15.41790 -15.21169 -15.15273 -14.86542 -14.55475 -14.29811 -14.08344 -13.97031 -13.87997 -13.38234 -13.21490 -13.05776 -12.98730 -12.93011 -12.88305 -12.70016 -12.67514 -12.45575 -12.41519 -12.18441 -12.02965 -11.95604 -11.41664 -11.29085 -11.07006 -10.89797 -10.88208 -9.81063 -9.58937 -8.48543 -8.33367 -6.19399 0.19717 0.63049 1.15769 1.33841 1.36008 1.40342 1.53457 1.75144 2.22046 2.29664 2.84775 3.09044 3.24451 3.49372 3.71746 3.77103 3.83971 3.94623 3.98610 4.02592 4.12103 4.20025 4.40976 4.46405 4.57408 4.58487 4.59729 4.74521 4.74631 4.80896 4.81941 4.86848 4.87104 4.90430 4.97185 5.12039 5.17764 5.24060 5.27933 5.30891 5.48478 5.53361 5.60787 5.76999 5.85399 5.90800 6.22205 6.26741 6.76269 6.85999 7.58460 7.60057 8.62499 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036183 B = 0.001414 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.662688 B =19790.861040 C =20357.480872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.354 6.354 6 C 0.470 3.530 7 O -0.526 6.526 8 C -0.114 4.114 9 C 0.177 3.823 10 N -0.663 5.663 11 N -0.263 5.263 12 C 0.090 3.910 13 C -0.118 4.118 14 C -0.041 4.041 15 C -0.236 4.236 16 C 0.130 3.870 17 O -0.242 6.242 18 C -0.399 4.399 19 H 0.088 0.912 20 C 0.013 3.987 21 N -0.920 5.920 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.268 1.268 25 H -0.264 1.264 26 C -0.196 4.196 27 C -0.043 4.043 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.388 0.612 42 H 0.136 0.864 43 H 0.153 0.847 44 H 0.118 0.882 45 H 0.285 0.715 46 H 0.126 0.874 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 34.292 -13.955 37.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.072 3.928 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.271 6.271 6 C 0.313 3.687 7 O -0.416 6.416 8 C -0.153 4.153 9 C 0.052 3.948 10 N -0.404 5.404 11 N -0.071 5.071 12 C -0.121 4.121 13 C -0.121 4.121 14 C -0.061 4.061 15 C -0.255 4.255 16 C 0.079 3.921 17 O -0.149 6.149 18 C -0.475 4.475 19 H 0.105 0.895 20 C -0.186 4.186 21 N -0.560 5.560 22 Si 0.789 3.211 23 H -0.191 1.191 24 H -0.193 1.193 25 H -0.188 1.188 26 C -0.216 4.216 27 C -0.063 4.063 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.227 0.773 42 H 0.153 0.847 43 H 0.171 0.829 44 H 0.136 0.864 45 H 0.094 0.906 46 H 0.144 0.856 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.433 33.941 -15.274 37.378 hybrid contribution 0.272 -0.645 0.833 1.088 sum 3.705 33.296 -14.442 36.482 Atomic orbital electron populations 1.22474 0.94070 1.03547 1.03803 1.22468 0.94517 0.93393 0.82436 1.21875 1.02470 0.90902 1.04170 1.22473 1.01894 1.02037 0.97488 1.86535 1.69734 1.24925 1.45897 1.23580 0.76870 0.80898 0.87319 1.90638 1.36256 1.70392 1.44292 1.21402 1.05319 0.92875 0.95679 1.20495 0.98495 0.88581 0.87184 1.47644 1.59896 1.05813 1.27001 1.74100 1.17280 0.94586 1.21087 1.23790 1.00153 0.92763 0.95377 1.18258 1.04259 0.92416 0.97176 1.21129 0.96735 0.91894 0.96326 1.21224 1.05160 0.97327 1.01808 1.19794 0.93569 0.83597 0.95094 1.83501 1.71484 1.21468 1.38442 1.20763 1.32771 0.99134 0.94819 0.89465 1.25224 0.98442 0.96521 0.98390 1.69729 1.46362 1.15452 1.24484 0.85273 0.78948 0.78292 0.78590 1.19141 1.19278 1.18834 1.20392 1.07361 0.95281 0.98523 1.21080 0.94705 0.92261 0.98254 0.91596 0.89423 0.92096 0.91097 0.88597 0.91101 0.92089 0.89431 0.91585 0.84810 0.84800 0.93196 0.93210 0.77258 0.84718 0.82919 0.86401 0.90575 0.85559 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.37 71.98 0.60 -1.65 16 2 C 0.11 1.28 1.13 -10.79 -0.01 1.27 16 3 C -0.14 -0.91 8.85 71.98 0.64 -0.28 16 4 C -0.18 -2.25 8.37 71.98 0.60 -1.65 16 5 O -0.35 -4.98 9.89 -51.43 -0.51 -5.49 16 6 C 0.47 7.26 7.27 71.24 0.52 7.78 16 7 O -0.53 -11.29 11.48 21.96 0.25 -11.04 16 8 C -0.11 -1.13 5.93 29.85 0.18 -0.95 16 9 C 0.18 3.04 5.96 86.38 0.51 3.55 16 10 N -0.66 -12.31 6.63 -187.50 -1.24 -13.55 16 11 N -0.26 -6.75 10.61 -52.21 -0.55 -7.31 16 12 C 0.09 2.20 10.75 87.40 0.94 3.14 16 13 C -0.12 -3.66 5.87 -20.12 -0.12 -3.77 16 14 C -0.04 -1.31 9.78 22.53 0.22 -1.09 16 15 C -0.24 -9.94 9.15 22.35 0.20 -9.74 16 16 C 0.13 6.04 6.65 22.67 0.15 6.19 16 17 O -0.24 -13.09 8.58 -21.76 -0.19 -13.28 16 18 C -0.40 -23.14 9.94 67.91 0.67 -22.46 16 19 H 0.09 5.23 5.42 -2.91 -0.02 5.21 16 20 C 0.01 0.75 5.49 84.82 0.47 1.22 16 21 N -0.92 -54.28 13.96 21.61 0.30 -53.98 16 22 Si 0.97 45.32 28.61 68.60 1.96 47.28 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 26 C -0.20 -7.76 9.97 22.35 0.22 -7.54 16 27 C -0.04 -1.45 9.57 22.53 0.22 -1.23 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 1.08 5.89 -2.38 -0.01 1.06 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 1.08 5.89 -2.39 -0.01 1.06 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 40 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.39 4.96 8.43 -213.32 -1.80 3.16 16 42 H 0.14 2.39 8.02 -2.91 -0.02 2.37 16 43 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 44 H 0.12 5.37 5.62 -2.91 -0.02 5.35 16 45 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 47 H 0.14 4.28 7.55 -2.91 -0.02 4.26 16 Total: -1.00 -70.82 394.85 5.23 -65.59 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.81 Total: 18.99 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 6.02 Total: -27.23 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -1.50 Total: -74.84 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.44 Total: -29.80 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.96 Total: 47.28 kcal Total: -70.82 5.23 -65.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783865773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.373 kcal (2) G-P(sol) polarization free energy of solvation -70.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds