Wall clock time and date at job start Tue Mar 31 2020 17:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36871 * 120.00177 * 2 1 4 4 H 1.08004 * 120.00225 * 201.52504 * 3 2 1 5 5 C 1.39051 * 119.99999 * 21.52773 * 3 2 1 6 6 N 1.31367 * 119.99749 * 13.36401 * 5 3 2 7 7 Si 1.86793 * 120.00041 * 193.36278 * 5 3 2 8 8 H 1.48497 * 109.47352 * 90.00138 * 7 5 3 9 9 H 1.48508 * 109.46973 * 209.99972 * 7 5 3 10 10 H 1.48504 * 109.47283 * 329.99659 * 7 5 3 11 11 C 1.34777 * 119.99950 * 180.02562 * 2 1 3 12 12 O 1.21589 * 120.00201 * 184.66401 * 11 2 1 13 13 C 1.47731 * 120.00116 * 4.65803 * 11 2 1 14 14 C 1.39666 * 120.14751 * 318.66744 * 13 11 2 15 15 C 1.37920 * 119.84519 * 180.02562 * 14 13 11 16 16 C 1.38406 * 120.14699 * 359.73018 * 15 14 13 17 17 C 1.38351 * 120.30588 * 0.54471 * 16 15 14 18 18 C 1.50700 * 119.92593 * 179.72482 * 17 16 15 19 19 N 1.46494 * 109.47326 * 269.73310 * 18 17 16 20 20 C 1.34779 * 120.00046 * 179.72455 * 19 18 17 21 21 O 1.21508 * 120.00190 * 0.27013 * 20 19 18 22 22 O 1.34640 * 119.99737 * 180.26965 * 20 19 18 23 23 C 1.45199 * 116.99459 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47286 * 60.00486 * 23 22 20 25 25 C 1.53003 * 109.46627 * 180.02562 * 23 22 20 26 26 C 1.52999 * 109.47432 * 300.00136 * 23 22 20 27 27 C 1.37955 * 120.15234 * 359.45353 * 17 16 15 28 28 H 1.09003 * 109.47487 * 264.77914 * 1 2 3 29 29 H 1.09003 * 109.47668 * 24.77611 * 1 2 3 30 30 H 1.08997 * 109.47617 * 144.78005 * 1 2 3 31 31 H 0.96996 * 119.99552 * 180.02562 * 6 5 3 32 32 H 1.08001 * 120.07755 * 359.97438 * 14 13 11 33 33 H 1.07995 * 119.92389 * 180.02562 * 15 14 13 34 34 H 1.08000 * 119.84160 * 180.27152 * 16 15 14 35 35 H 1.08997 * 109.47236 * 149.72252 * 18 17 16 36 36 H 1.09006 * 109.47074 * 29.73075 * 18 17 16 37 37 H 0.97000 * 120.00072 * 359.97438 * 19 18 17 38 38 H 1.09004 * 109.47047 * 59.99585 * 24 23 22 39 39 H 1.08994 * 109.47015 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.46733 * 299.99680 * 24 23 22 41 41 H 1.09002 * 109.46943 * 60.00701 * 25 23 22 42 42 H 1.09007 * 109.46798 * 179.97438 * 25 23 22 43 43 H 1.08990 * 109.47483 * 300.00251 * 25 23 22 44 44 H 1.08998 * 109.47242 * 60.00374 * 26 23 22 45 45 H 1.09003 * 109.47099 * 180.02562 * 26 23 22 46 46 H 1.09006 * 109.47060 * 300.00076 * 26 23 22 47 47 H 1.08006 * 120.08154 * 180.24951 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.1729 1.2179 -0.3432 5 6 1.5269 2.3476 0.4419 6 7 0.3912 2.2755 1.0983 7 14 2.3055 4.0111 0.1021 8 1 1.8085 4.5346 -1.1956 9 1 1.9449 4.9575 1.1883 10 1 3.7820 3.8640 0.0438 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1690 0.0851 13 6 1.4038 -2.4444 -0.1050 14 6 0.2147 -2.6294 0.6038 15 6 -0.4661 -3.8246 0.5021 16 6 0.0237 -4.8371 -0.3044 17 6 1.2040 -4.6626 -1.0048 18 6 1.7327 -5.7732 -1.8755 19 7 2.6197 -6.6319 -1.0869 20 6 3.2079 -7.7005 -1.6602 21 8 3.0063 -7.9489 -2.8325 22 8 4.0188 -8.4928 -0.9340 23 6 4.6173 -9.6259 -1.6167 24 6 5.4697 -9.1256 -2.7846 25 6 5.4992 -10.4034 -0.6375 26 6 3.5135 -10.5431 -2.1470 27 6 1.8951 -3.4723 -0.9123 28 1 -0.3634 -0.0935 1.0234 29 1 -0.3634 0.9331 -0.4307 30 1 -0.3634 -0.8395 -0.5926 31 1 -0.0431 3.0863 1.4062 32 1 -0.1704 -1.8388 1.2306 33 1 -1.3860 -3.9688 1.0492 34 1 -0.5158 -5.7694 -0.3838 35 1 2.2879 -5.3468 -2.7110 36 1 0.8997 -6.3639 -2.2567 37 1 2.7809 -6.4335 -0.1512 38 1 6.2561 -8.4722 -2.4068 39 1 5.9193 -9.9762 -3.2968 40 1 4.8410 -8.5719 -3.4821 41 1 4.8916 -10.7600 0.1943 42 1 5.9482 -11.2544 -1.1499 43 1 6.2855 -9.7503 -0.2593 44 1 2.8850 -9.9895 -2.8445 45 1 3.9629 -11.3940 -2.6591 46 1 2.9063 -10.8996 -1.3149 47 1 2.8143 -3.3358 -1.4627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786851112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:18 Heat of formation + Delta-G solvation = -80.172407 kcal Electronic energy + Delta-G solvation = -28296.288307 eV Core-core repulsion = 24251.783947 eV Total energy + Delta-G solvation = -4044.504360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87869 -39.66478 -38.04382 -37.25154 -34.99754 -34.80001 -34.12881 -32.01906 -31.04323 -30.61956 -27.65549 -27.60036 -26.82587 -25.91879 -25.02304 -22.74712 -22.50053 -21.34074 -20.25202 -19.28822 -18.30352 -17.09908 -16.80531 -16.37397 -16.27779 -15.98931 -15.35034 -15.20942 -14.99438 -14.59718 -14.56914 -14.13876 -13.88901 -13.73226 -13.59351 -13.00967 -12.90407 -12.73417 -12.69463 -12.34542 -12.22765 -12.13294 -12.11525 -11.76957 -11.74979 -11.62668 -11.51530 -11.34209 -11.13407 -10.94575 -10.61860 -10.54971 -10.40025 -10.39492 -10.20475 -9.28468 -9.09450 -8.72724 -8.65829 -8.38391 -7.80760 -6.44793 -3.95344 1.24064 1.48951 2.20951 2.75390 3.11081 3.20121 3.25622 3.61209 4.03806 4.09105 4.27863 4.47835 4.52303 4.59881 4.66475 4.76129 5.02102 5.07464 5.21277 5.21997 5.29087 5.30986 5.33992 5.43783 5.50407 5.53328 5.60916 5.62186 5.67934 5.73671 5.81643 5.99970 6.06186 6.10024 6.21068 6.23206 6.31069 6.40429 6.60001 6.63334 6.75517 6.79280 7.08914 7.15812 7.34373 7.45957 8.02255 8.28486 8.38456 9.07731 9.29816 9.88030 10.59111 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022434 B = 0.002157 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.790148 B =12978.382028 C =13731.673787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.430 5.430 3 C -0.303 4.303 4 H 0.102 0.898 5 C 0.030 3.970 6 N -0.876 5.876 7 Si 0.930 3.070 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.268 1.268 11 C 0.471 3.529 12 O -0.587 6.587 13 C -0.091 4.091 14 C -0.087 4.087 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.128 4.128 18 C 0.185 3.815 19 N -0.705 5.705 20 C 0.650 3.350 21 O -0.572 6.572 22 O -0.365 6.365 23 C 0.136 3.864 24 C -0.184 4.184 25 C -0.141 4.141 26 C -0.183 4.183 27 C -0.058 4.058 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.033 0.967 31 H 0.270 0.730 32 H 0.137 0.863 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.409 0.591 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.059 0.941 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.413 -21.213 -3.416 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.146 5.146 3 C -0.431 4.431 4 H 0.119 0.881 5 C -0.174 4.174 6 N -0.515 5.515 7 Si 0.756 3.244 8 H -0.202 1.202 9 H -0.208 1.208 10 H -0.192 1.192 11 C 0.260 3.740 12 O -0.473 6.473 13 C -0.095 4.095 14 C -0.106 4.106 15 C -0.148 4.148 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.064 3.936 19 N -0.364 5.364 20 C 0.403 3.597 21 O -0.461 6.461 22 O -0.280 6.280 23 C 0.099 3.901 24 C -0.241 4.241 25 C -0.198 4.198 26 C -0.240 4.240 27 C -0.077 4.077 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.244 0.756 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.078 0.922 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.017 -21.209 -3.884 21.562 hybrid contribution 0.153 0.992 0.406 1.082 sum 0.136 -20.217 -3.478 20.515 Atomic orbital electron populations 1.21816 0.81129 1.00752 1.00236 1.43523 1.05706 1.04696 1.60718 1.19733 0.99226 0.83437 1.40737 0.88052 1.25396 0.96531 1.00297 0.95161 1.69983 1.17605 1.29566 1.34304 0.85861 0.79740 0.80763 0.78020 1.20207 1.20816 1.19206 1.17956 0.87427 0.83038 0.85585 1.90621 1.13601 1.86666 1.56413 1.20326 0.95270 0.96014 0.97865 1.21842 0.93563 0.97537 0.97700 1.21056 1.00438 0.93446 0.99873 1.21056 0.95434 0.98834 0.96291 1.19580 0.96925 0.95041 1.01330 1.20121 0.92635 0.88627 0.92226 1.44910 1.49347 1.26558 1.15584 1.18088 0.77959 0.80126 0.83526 1.90889 1.66069 1.73694 1.15490 1.86318 1.58868 1.39112 1.43690 1.22055 0.92661 0.82898 0.92479 1.22521 1.00422 1.02530 0.98649 1.21863 0.99264 0.99588 0.99109 1.22515 0.99197 0.99784 1.02505 1.21114 0.98637 0.91428 0.96549 0.92844 0.90170 0.94874 0.91968 0.84498 0.85764 0.86167 0.90266 0.90366 0.75607 0.92076 0.91235 0.89300 0.91499 0.90205 0.91385 0.89336 0.91235 0.92238 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.27 7.21 59.84 0.43 2.70 16 2 N -0.43 -10.96 3.01 -123.32 -0.37 -11.33 16 3 C -0.30 -8.35 9.27 -15.00 -0.14 -8.49 16 4 H 0.10 2.92 7.44 -52.48 -0.39 2.53 16 5 C 0.03 0.78 5.04 -17.45 -0.09 0.69 16 6 N -0.88 -22.64 10.69 55.50 0.59 -22.05 16 7 Si 0.93 20.30 29.57 -169.99 -5.03 15.27 16 8 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 C 0.47 11.68 7.28 -12.38 -0.09 11.59 16 12 O -0.59 -16.62 16.66 5.29 0.09 -16.53 16 13 C -0.09 -1.77 5.16 -104.97 -0.54 -2.31 16 14 C -0.09 -1.44 7.62 -39.16 -0.30 -1.74 16 15 C -0.13 -1.69 10.03 -39.64 -0.40 -2.08 16 16 C -0.10 -1.16 9.69 -39.48 -0.38 -1.55 16 17 C -0.13 -1.68 5.24 -104.68 -0.55 -2.23 16 18 C 0.19 2.18 5.79 -5.20 -0.03 2.14 16 19 N -0.70 -8.30 5.55 -66.47 -0.37 -8.67 16 20 C 0.65 8.45 8.06 54.06 0.44 8.89 16 21 O -0.57 -8.38 11.88 -19.28 -0.23 -8.61 16 22 O -0.37 -4.37 9.94 -40.33 -0.40 -4.77 16 23 C 0.14 1.32 1.13 -90.62 -0.10 1.22 16 24 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 25 C -0.14 -1.01 8.85 37.16 0.33 -0.68 16 26 C -0.18 -1.66 8.37 37.16 0.31 -1.35 16 27 C -0.06 -0.96 9.30 -39.17 -0.36 -1.33 16 28 H 0.05 1.16 6.64 -51.93 -0.34 0.81 16 29 H 0.08 1.86 6.53 -51.93 -0.34 1.52 16 30 H 0.03 0.62 5.98 -51.93 -0.31 0.31 16 31 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.14 2.31 5.51 -52.49 -0.29 2.02 16 33 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 37 H 0.41 4.46 8.57 -40.82 -0.35 4.11 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 1.00 5.88 -51.93 -0.31 0.70 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -31.80 383.12 -7.94 -39.74 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.84 Total: 7.17 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.16 Total: 4.01 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: -0.15 Total: -42.05 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.54 Total: -29.92 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.80 -7.94 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786851112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.428 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds