Wall clock time and date at job start Tue Mar 31 2020 17:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36871 * 120.00177 * 2 1 4 4 H 1.08004 * 120.00225 * 201.52504 * 3 2 1 5 5 C 1.39051 * 119.99999 * 21.52773 * 3 2 1 6 6 N 1.31367 * 119.99749 * 13.36401 * 5 3 2 7 7 Si 1.86793 * 120.00041 * 193.36278 * 5 3 2 8 8 H 1.48497 * 109.47352 * 90.00138 * 7 5 3 9 9 H 1.48508 * 109.46973 * 209.99972 * 7 5 3 10 10 H 1.48504 * 109.47283 * 329.99659 * 7 5 3 11 11 C 1.34777 * 119.99950 * 180.02562 * 2 1 3 12 12 O 1.21589 * 120.00201 * 184.66401 * 11 2 1 13 13 C 1.47731 * 120.00116 * 4.65803 * 11 2 1 14 14 C 1.39666 * 120.14751 * 318.66744 * 13 11 2 15 15 C 1.37920 * 119.84519 * 180.02562 * 14 13 11 16 16 C 1.38406 * 120.14699 * 359.73018 * 15 14 13 17 17 C 1.38351 * 120.30588 * 0.54471 * 16 15 14 18 18 C 1.50700 * 119.92593 * 179.72482 * 17 16 15 19 19 N 1.46494 * 109.47326 * 269.73310 * 18 17 16 20 20 C 1.34779 * 120.00046 * 179.72455 * 19 18 17 21 21 O 1.21508 * 120.00190 * 0.27013 * 20 19 18 22 22 O 1.34640 * 119.99737 * 180.26965 * 20 19 18 23 23 C 1.45199 * 116.99459 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47286 * 60.00486 * 23 22 20 25 25 C 1.53003 * 109.46627 * 180.02562 * 23 22 20 26 26 C 1.52999 * 109.47432 * 300.00136 * 23 22 20 27 27 C 1.37955 * 120.15234 * 359.45353 * 17 16 15 28 28 H 1.09003 * 109.47487 * 264.77914 * 1 2 3 29 29 H 1.09003 * 109.47668 * 24.77611 * 1 2 3 30 30 H 1.08997 * 109.47617 * 144.78005 * 1 2 3 31 31 H 0.96996 * 119.99552 * 180.02562 * 6 5 3 32 32 H 1.08001 * 120.07755 * 359.97438 * 14 13 11 33 33 H 1.07995 * 119.92389 * 180.02562 * 15 14 13 34 34 H 1.08000 * 119.84160 * 180.27152 * 16 15 14 35 35 H 1.08997 * 109.47236 * 149.72252 * 18 17 16 36 36 H 1.09006 * 109.47074 * 29.73075 * 18 17 16 37 37 H 0.97000 * 120.00072 * 359.97438 * 19 18 17 38 38 H 1.09004 * 109.47047 * 59.99585 * 24 23 22 39 39 H 1.08994 * 109.47015 * 179.97438 * 24 23 22 40 40 H 1.09005 * 109.46733 * 299.99680 * 24 23 22 41 41 H 1.09002 * 109.46943 * 60.00701 * 25 23 22 42 42 H 1.09007 * 109.46798 * 179.97438 * 25 23 22 43 43 H 1.08990 * 109.47483 * 300.00251 * 25 23 22 44 44 H 1.08998 * 109.47242 * 60.00374 * 26 23 22 45 45 H 1.09003 * 109.47099 * 180.02562 * 26 23 22 46 46 H 1.09006 * 109.47060 * 300.00076 * 26 23 22 47 47 H 1.08006 * 120.08154 * 180.24951 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.1729 1.2179 -0.3432 5 6 1.5269 2.3476 0.4419 6 7 0.3912 2.2755 1.0983 7 14 2.3055 4.0111 0.1021 8 1 1.8085 4.5346 -1.1956 9 1 1.9449 4.9575 1.1883 10 1 3.7820 3.8640 0.0438 11 6 2.1388 -1.1672 -0.0005 12 8 3.3517 -1.1690 0.0851 13 6 1.4038 -2.4444 -0.1050 14 6 0.2147 -2.6294 0.6038 15 6 -0.4661 -3.8246 0.5021 16 6 0.0237 -4.8371 -0.3044 17 6 1.2040 -4.6626 -1.0048 18 6 1.7327 -5.7732 -1.8755 19 7 2.6197 -6.6319 -1.0869 20 6 3.2079 -7.7005 -1.6602 21 8 3.0063 -7.9489 -2.8325 22 8 4.0188 -8.4928 -0.9340 23 6 4.6173 -9.6259 -1.6167 24 6 5.4697 -9.1256 -2.7846 25 6 5.4992 -10.4034 -0.6375 26 6 3.5135 -10.5431 -2.1470 27 6 1.8951 -3.4723 -0.9123 28 1 -0.3634 -0.0935 1.0234 29 1 -0.3634 0.9331 -0.4307 30 1 -0.3634 -0.8395 -0.5926 31 1 -0.0431 3.0863 1.4062 32 1 -0.1704 -1.8388 1.2306 33 1 -1.3860 -3.9688 1.0492 34 1 -0.5158 -5.7694 -0.3838 35 1 2.2879 -5.3468 -2.7110 36 1 0.8997 -6.3639 -2.2567 37 1 2.7809 -6.4335 -0.1512 38 1 6.2561 -8.4722 -2.4068 39 1 5.9193 -9.9762 -3.2968 40 1 4.8410 -8.5719 -3.4821 41 1 4.8916 -10.7600 0.1943 42 1 5.9482 -11.2544 -1.1499 43 1 6.2855 -9.7503 -0.2593 44 1 2.8850 -9.9895 -2.8445 45 1 3.9629 -11.3940 -2.6591 46 1 2.9063 -10.8996 -1.3149 47 1 2.8143 -3.3358 -1.4627 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786851112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:17 Heat of formation + Delta-G solvation = -100.722301 kcal Electronic energy + Delta-G solvation = -28297.179417 eV Core-core repulsion = 24251.783947 eV Total energy + Delta-G solvation = -4045.395470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81643 -41.13221 -39.50657 -38.29708 -36.79343 -36.05184 -34.95505 -33.84157 -32.29633 -31.95666 -28.49231 -28.33303 -28.26930 -27.17777 -26.85318 -24.24584 -23.45613 -22.48132 -21.22256 -20.80250 -19.31511 -19.03168 -17.95769 -17.63341 -17.37323 -17.31615 -16.77319 -16.49198 -16.22133 -15.92871 -15.64789 -15.56799 -15.26172 -15.02811 -14.41749 -14.40499 -14.19810 -13.95741 -13.65749 -13.45780 -13.41745 -13.29784 -13.13950 -13.05220 -12.87856 -12.83872 -12.66393 -12.49784 -12.43170 -12.34840 -12.28796 -12.16816 -11.93624 -11.36655 -11.14012 -11.03598 -10.53197 -10.24331 -9.91207 -9.78448 -9.75450 -8.42719 -6.03954 0.03755 0.27687 1.27571 1.37312 1.39167 1.51574 1.76571 2.01577 2.23230 2.75679 2.97626 3.09502 3.29020 3.58144 3.77955 3.82588 3.84599 3.97661 3.98113 4.14980 4.29278 4.39118 4.49127 4.58375 4.62484 4.64765 4.68468 4.79387 4.80109 4.88178 4.89821 4.90430 4.95694 5.04439 5.07302 5.22646 5.29785 5.31150 5.36984 5.38124 5.43172 5.50017 5.52411 5.58529 5.94908 6.03660 6.38462 6.41012 7.07513 7.32606 7.35182 7.93283 8.59921 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022434 B = 0.002157 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.790148 B =12978.382028 C =13731.673787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.446 5.446 3 C -0.348 4.348 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.888 5.888 7 Si 0.993 3.007 8 H -0.263 1.263 9 H -0.269 1.269 10 H -0.277 1.277 11 C 0.461 3.539 12 O -0.639 6.639 13 C -0.124 4.124 14 C -0.093 4.093 15 C -0.114 4.114 16 C -0.073 4.073 17 C -0.112 4.112 18 C 0.190 3.810 19 N -0.701 5.701 20 C 0.647 3.353 21 O -0.591 6.591 22 O -0.372 6.372 23 C 0.123 3.877 24 C -0.181 4.181 25 C -0.137 4.137 26 C -0.177 4.177 27 C -0.067 4.067 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.278 0.722 32 H 0.129 0.871 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.413 0.587 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.064 0.936 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.309 -23.652 -3.149 23.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.162 5.162 3 C -0.476 4.476 4 H 0.089 0.911 5 C -0.203 4.203 6 N -0.526 5.526 7 Si 0.816 3.184 8 H -0.188 1.188 9 H -0.194 1.194 10 H -0.202 1.202 11 C 0.252 3.748 12 O -0.529 6.529 13 C -0.127 4.127 14 C -0.112 4.112 15 C -0.132 4.132 16 C -0.091 4.091 17 C -0.113 4.113 18 C 0.069 3.931 19 N -0.360 5.360 20 C 0.401 3.599 21 O -0.482 6.482 22 O -0.286 6.286 23 C 0.087 3.913 24 C -0.238 4.238 25 C -0.194 4.194 26 C -0.234 4.234 27 C -0.087 4.087 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.182 0.818 34 H 0.182 0.818 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.249 0.751 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.083 0.917 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.957 -23.656 -3.604 24.009 hybrid contribution 0.735 1.587 0.322 1.778 sum -1.222 -22.069 -3.282 22.345 Atomic orbital electron populations 1.21746 0.79130 1.00991 1.00524 1.43768 1.07049 1.04511 1.60918 1.19653 0.98945 0.85423 1.43532 0.91073 1.26147 0.96980 1.02960 0.94203 1.70033 1.17982 1.30799 1.33753 0.84939 0.78220 0.76547 0.78675 1.18777 1.19401 1.20205 1.18897 0.87253 0.84762 0.83849 1.90551 1.16085 1.87870 1.58387 1.19942 0.97142 0.94093 1.01523 1.21807 0.92763 0.99195 0.97457 1.21435 1.00929 0.91588 0.99227 1.21543 0.94082 0.99903 0.93579 1.19623 0.96953 0.93708 1.01011 1.20089 0.93149 0.88324 0.91565 1.44857 1.49201 1.26208 1.15762 1.18203 0.78026 0.80347 0.83353 1.90887 1.66742 1.74255 1.16318 1.86331 1.58590 1.39686 1.44024 1.22436 0.93165 0.82533 0.93185 1.22487 0.99883 1.03100 0.98371 1.21892 0.98736 0.99864 0.98866 1.22457 0.98799 0.99968 1.02225 1.21021 0.98561 0.92436 0.96674 0.92926 0.91898 0.91913 0.91234 0.85355 0.81780 0.81820 0.91303 0.88274 0.75067 0.92509 0.88917 0.91904 0.91045 0.87819 0.91667 0.91769 0.89070 0.91739 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.29 7.21 127.77 0.92 6.21 16 2 N -0.45 -23.94 3.01 -662.33 -2.00 -25.94 16 3 C -0.35 -20.22 9.27 84.10 0.78 -19.44 16 4 H 0.07 4.44 7.44 -2.91 -0.02 4.42 16 5 C 0.00 0.00 5.04 84.96 0.43 0.42 16 6 N -0.89 -46.39 10.69 21.68 0.23 -46.16 16 7 Si 0.99 42.36 29.57 68.60 2.03 44.39 16 8 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 9 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 C 0.46 24.28 7.28 86.75 0.63 24.92 16 12 O -0.64 -39.00 16.66 -4.00 -0.07 -39.07 16 13 C -0.12 -4.91 5.16 -20.09 -0.10 -5.01 16 14 C -0.09 -2.95 7.62 22.54 0.17 -2.78 16 15 C -0.11 -2.48 10.03 22.23 0.22 -2.26 16 16 C -0.07 -1.40 9.69 22.34 0.22 -1.18 16 17 C -0.11 -2.71 5.24 -19.90 -0.10 -2.81 16 18 C 0.19 4.10 5.79 85.63 0.50 4.59 16 19 N -0.70 -15.52 5.55 -594.62 -3.30 -18.82 16 20 C 0.65 16.29 8.06 129.79 1.05 17.33 16 21 O -0.59 -17.07 11.88 19.82 0.24 -16.83 16 22 O -0.37 -8.53 9.94 -55.50 -0.55 -9.08 16 23 C 0.12 2.21 1.13 -10.79 -0.01 2.20 16 24 C -0.18 -3.36 8.37 71.98 0.60 -2.76 16 25 C -0.14 -1.64 8.85 71.98 0.64 -1.00 16 26 C -0.18 -2.91 8.37 71.98 0.60 -2.31 16 27 C -0.07 -2.27 9.30 22.54 0.21 -2.06 16 28 H 0.05 2.31 6.64 -2.39 -0.02 2.30 16 29 H 0.06 2.98 6.53 -2.39 -0.02 2.96 16 30 H 0.06 2.37 5.98 -2.39 -0.01 2.35 16 31 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 32 H 0.13 4.25 5.51 -2.91 -0.02 4.23 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 36 H 0.10 1.79 8.08 -2.38 -0.02 1.77 16 37 H 0.41 8.40 8.57 -92.71 -0.79 7.61 16 38 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.52 5.88 -2.38 -0.01 1.50 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 1.40 5.88 -2.39 -0.01 1.39 16 45 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.11 4.00 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -74.82 383.12 3.53 -71.29 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.20 Total: 26.16 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.75 Total: 14.07 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -5.07 Total: -90.92 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -0.38 Total: -64.98 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -74.82 3.53 -71.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786851112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.430 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds