Wall clock time and date at job start Tue Mar 31 2020 18:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 H 1.09000 * 109.46703 * 55.11300 * 3 2 1 5 5 C 1.50705 * 109.46787 * 175.10867 * 3 2 1 6 6 H 1.08001 * 119.99786 * 91.89795 * 5 3 2 7 7 C 1.37872 * 119.99906 * 271.88929 * 5 3 2 8 8 N 1.31520 * 119.99940 * 183.16596 * 7 5 3 9 9 Si 1.86796 * 120.00211 * 3.16731 * 7 5 3 10 10 H 1.48498 * 109.46998 * 264.94017 * 9 7 5 11 11 H 1.48495 * 109.47385 * 24.94293 * 9 7 5 12 12 H 1.48503 * 109.47101 * 144.94408 * 9 7 5 13 13 O 1.45199 * 109.47222 * 295.10900 * 3 2 1 14 14 C 1.34229 * 116.99904 * 90.00091 * 13 3 2 15 15 O 1.20837 * 119.99965 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00322 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47142 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.47390 * 54.99912 * 17 16 14 19 19 N 1.46494 * 109.46999 * 294.99367 * 17 16 14 20 20 C 1.34769 * 120.00625 * 294.52587 * 19 17 16 21 21 N 1.34779 * 120.00391 * 185.00080 * 20 19 17 22 22 O 1.21592 * 119.99724 * 4.99299 * 20 19 17 23 23 C 1.50703 * 109.46586 * 174.99739 * 17 16 14 24 24 C 1.38263 * 119.99578 * 158.84201 * 23 17 16 25 25 C 1.38212 * 119.99806 * 179.97438 * 24 23 17 26 26 C 1.38254 * 119.99837 * 359.95724 * 25 24 23 27 27 C 1.38207 * 120.00637 * 359.97438 * 26 25 24 28 28 C 1.50704 * 120.00629 * 180.02562 * 27 26 25 29 29 C 1.38213 * 120.00305 * 338.56602 * 23 17 16 30 30 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46967 * 299.99568 * 1 2 3 32 32 H 1.09005 * 109.47416 * 59.99596 * 1 2 3 33 33 H 1.09008 * 109.46790 * 240.00289 * 2 1 3 34 34 H 1.08995 * 109.47142 * 120.00853 * 2 1 3 35 35 H 0.96990 * 120.00134 * 180.02562 * 8 7 5 36 36 H 1.09009 * 109.46597 * 299.99843 * 16 14 13 37 37 H 1.08997 * 109.47102 * 59.99289 * 16 14 13 38 38 H 0.97006 * 119.99986 * 114.52679 * 19 17 16 39 39 H 0.96994 * 120.00388 * 359.97438 * 21 20 19 40 40 H 0.97006 * 119.99579 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.00091 * 359.97438 * 24 23 17 42 42 H 1.08002 * 119.99830 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.99821 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.46462 * 89.99926 * 28 27 26 45 45 H 1.08997 * 109.47441 * 209.99992 * 28 27 26 46 46 H 1.09001 * 109.46610 * 330.00145 * 28 27 26 47 47 H 1.07992 * 119.99735 * 0.02562 * 29 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9809 0.8430 5 6 3.5422 1.4441 0.1212 6 1 4.1556 1.4491 -0.7677 7 6 4.1333 1.4395 1.3667 8 7 5.4426 1.5038 1.4735 9 14 3.0747 1.3417 2.9026 10 1 2.8241 2.7113 3.4190 11 1 1.7806 0.6931 2.5715 12 1 3.7779 0.5431 3.9385 13 8 1.6537 2.0925 -1.2396 14 6 0.4705 2.7263 -1.2523 15 8 -0.2197 2.7372 -0.2605 16 6 0.0024 3.4233 -2.5037 17 6 -1.3652 4.0610 -2.2511 18 1 -1.3049 4.7187 -1.3840 19 7 -2.3548 3.0105 -1.9995 20 6 -2.6804 2.1430 -2.9781 21 7 -3.6621 1.2411 -2.7800 22 8 -2.0885 2.1740 -4.0397 23 6 -1.7776 4.8604 -3.4603 24 6 -3.1109 5.1619 -3.6677 25 6 -3.4891 5.8955 -4.7763 26 6 -2.5341 6.3286 -5.6773 27 6 -1.2012 6.0285 -5.4692 28 6 -0.1601 6.5011 -6.4511 29 6 -0.8224 5.2971 -4.3587 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 5.8585 1.5001 2.3497 36 1 0.7190 4.1977 -2.7779 37 1 -0.0779 2.6993 -3.3145 38 1 -2.7758 2.9394 -1.1285 39 1 -4.1342 1.2161 -1.9330 40 1 -3.8967 0.6169 -3.4846 41 1 -3.8569 4.8242 -2.9635 42 1 -4.5307 6.1307 -4.9386 43 1 -2.8296 6.9022 -6.5434 44 1 0.2027 7.4841 -6.1507 45 1 0.6711 5.7962 -6.4667 46 1 -0.6013 6.5648 -7.4457 47 1 0.2194 5.0650 -4.1945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:07 Heat of formation + Delta-G solvation = -100.971588 kcal Electronic energy + Delta-G solvation = -29889.519482 eV Core-core repulsion = 25844.113203 eV Total energy + Delta-G solvation = -4045.406280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73359 -39.49058 -38.97384 -36.30653 -35.12782 -33.79376 -33.41359 -32.60081 -31.99573 -31.45907 -29.55258 -27.78194 -26.96387 -25.00964 -22.96933 -22.14999 -21.82769 -20.82236 -19.83713 -19.43160 -18.53801 -17.59834 -17.27119 -16.83086 -16.37162 -15.86133 -15.66882 -15.18219 -14.96361 -14.71701 -14.64742 -14.24245 -14.06365 -13.75066 -13.46623 -13.21321 -13.02444 -12.88521 -12.55253 -12.46857 -12.17583 -12.03638 -11.85543 -11.69620 -11.56548 -11.30449 -11.09325 -11.03239 -10.98399 -10.80255 -10.17146 -10.07448 -9.94339 -9.69036 -9.63983 -9.35267 -9.15071 -9.10044 -8.76634 -8.67028 -8.55164 -6.26333 -4.29255 1.32149 1.39677 2.91142 2.94954 3.17928 3.25042 3.27825 3.32459 3.53939 3.77841 4.25991 4.43350 4.69645 4.73542 4.82698 4.99987 5.03942 5.08430 5.18553 5.31738 5.42406 5.49247 5.52891 5.63954 5.71801 5.74972 5.88339 5.96492 5.98421 6.03144 6.07719 6.09284 6.37548 6.42347 6.44138 6.56880 6.59985 6.60943 6.73093 6.78435 6.82036 6.88076 6.99720 7.16835 7.39716 7.56110 7.96731 8.25791 8.65325 8.67396 8.85617 9.32924 10.85350 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.003399 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.128870 B = 8235.948690 C = 9272.666808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.135 4.135 3 C 0.194 3.806 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.085 0.915 7 C 0.081 3.919 8 N -0.884 5.884 9 Si 0.866 3.134 10 H -0.274 1.274 11 H -0.254 1.254 12 H -0.281 1.281 13 O -0.345 6.345 14 C 0.458 3.542 15 O -0.527 6.527 16 C -0.141 4.141 17 C 0.224 3.776 18 H 0.110 0.890 19 N -0.730 5.730 20 C 0.705 3.295 21 N -0.870 5.870 22 O -0.583 6.583 23 C -0.071 4.071 24 C -0.109 4.109 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.084 4.084 28 C -0.115 4.115 29 C -0.106 4.106 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.269 0.731 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.403 0.597 39 H 0.395 0.605 40 H 0.412 0.588 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.917 6.965 -10.115 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C 0.140 3.860 4 H 0.063 0.937 5 C -0.559 4.559 6 H 0.103 0.897 7 C -0.123 4.123 8 N -0.521 5.521 9 Si 0.692 3.308 10 H -0.199 1.199 11 H -0.178 1.178 12 H -0.207 1.207 13 O -0.260 6.260 14 C 0.302 3.698 15 O -0.418 6.418 16 C -0.180 4.180 17 C 0.118 3.882 18 H 0.128 0.872 19 N -0.385 5.385 20 C 0.404 3.596 21 N -0.438 5.438 22 O -0.460 6.460 23 C -0.072 4.072 24 C -0.127 4.127 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.084 4.084 28 C -0.171 4.171 29 C -0.125 4.125 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.141 0.859 38 H 0.237 0.763 39 H 0.222 0.778 40 H 0.244 0.756 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.302 7.102 -10.511 23.097 hybrid contribution -1.011 -0.537 1.570 1.943 sum -20.312 6.565 -8.940 23.143 Atomic orbital electron populations 1.21882 0.97565 0.99521 1.01360 1.22181 0.93670 0.99286 1.02201 1.20894 0.95927 0.88457 0.80679 0.93662 1.20810 0.87850 1.52283 0.94978 0.89723 1.24842 0.94977 0.93837 0.98604 1.69870 1.09036 1.48435 1.24725 0.87032 0.81542 0.79135 0.83112 1.19915 1.17824 1.20696 1.86604 1.34278 1.62176 1.42967 1.23287 0.80482 0.76716 0.89335 1.90534 1.55772 1.59449 1.36035 1.22010 0.96936 1.02318 0.96701 1.19322 0.85785 0.86917 0.96152 0.87201 1.44988 1.45891 1.32942 1.14726 1.16000 0.80341 0.79262 0.84031 1.43002 1.40356 1.39516 1.20934 1.90961 1.55247 1.73750 1.26064 1.19869 0.93879 0.97419 0.96035 1.20763 0.95219 0.98821 0.97910 1.21004 0.99042 0.98696 0.94856 1.20960 0.92671 1.01075 0.99592 1.19869 0.94603 0.97939 0.95980 1.20795 0.97474 1.01453 0.97408 1.21004 0.99629 0.98074 0.93743 0.94411 0.92878 0.93827 0.92027 0.91195 0.92092 0.87185 0.85917 0.76286 0.77775 0.75630 0.86716 0.86526 0.86528 0.91227 0.91271 0.91759 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.56 37.16 0.32 -2.48 16 2 C -0.14 -3.01 5.17 -26.73 -0.14 -3.14 16 3 C 0.19 4.79 1.79 -27.88 -0.05 4.74 16 4 H 0.05 1.16 4.97 -51.93 -0.26 0.90 16 5 C -0.52 -14.83 9.25 -34.44 -0.32 -15.15 16 6 H 0.08 2.62 8.06 -52.49 -0.42 2.19 16 7 C 0.08 2.31 5.47 -17.82 -0.10 2.22 16 8 N -0.88 -26.38 13.96 55.43 0.77 -25.61 16 9 Si 0.87 21.02 26.25 -169.99 -4.46 16.55 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.25 -5.90 5.77 56.52 0.33 -5.58 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 O -0.34 -7.92 9.81 -39.25 -0.38 -8.31 16 14 C 0.46 8.79 6.27 36.01 0.23 9.02 16 15 O -0.53 -10.33 12.50 -18.76 -0.23 -10.56 16 16 C -0.14 -2.13 4.45 -27.88 -0.12 -2.25 16 17 C 0.22 2.84 2.57 -69.08 -0.18 2.66 16 18 H 0.11 1.31 7.96 -51.93 -0.41 0.89 16 19 N -0.73 -8.49 3.74 -59.82 -0.22 -8.71 16 20 C 0.71 9.06 7.73 -86.92 -0.67 8.38 16 21 N -0.87 -7.64 8.88 27.63 0.25 -7.39 16 22 O -0.58 -9.71 14.44 5.28 0.08 -9.64 16 23 C -0.07 -0.88 4.10 -104.62 -0.43 -1.31 16 24 C -0.11 -1.24 8.80 -39.58 -0.35 -1.59 16 25 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 26 C -0.12 -1.32 9.70 -39.59 -0.38 -1.71 16 27 C -0.08 -0.94 5.88 -104.62 -0.62 -1.56 16 28 C -0.11 -1.01 10.01 36.01 0.36 -0.65 16 29 C -0.11 -1.31 8.78 -39.58 -0.35 -1.66 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 1.04 7.79 -51.93 -0.40 0.64 16 32 H 0.04 0.83 6.06 -51.93 -0.31 0.52 16 33 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 34 H 0.07 1.57 6.49 -51.93 -0.34 1.23 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 36 H 0.11 1.46 6.32 -51.92 -0.33 1.13 16 37 H 0.12 2.03 6.30 -51.93 -0.33 1.71 16 38 H 0.40 3.95 8.85 -40.82 -0.36 3.59 16 39 H 0.39 2.36 8.85 -40.82 -0.36 2.00 16 40 H 0.41 3.24 8.93 -40.82 -0.36 2.88 16 41 H 0.11 1.16 7.68 -52.49 -0.40 0.76 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 46 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 47 H 0.13 1.47 5.87 -52.49 -0.31 1.16 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -34.36 377.27 -8.49 -42.84 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.77 Total: 11.27 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.19 Total: -6.13 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.80 Total: -41.71 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.54 Total: -28.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.46 Total: 16.55 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.36 -8.49 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.129 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds