Wall clock time and date at job start Tue Mar 31 2020 18:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47182 * 2 1 4 4 H 1.09000 * 109.46703 * 55.11300 * 3 2 1 5 5 C 1.50705 * 109.46787 * 175.10867 * 3 2 1 6 6 H 1.08001 * 119.99786 * 91.89795 * 5 3 2 7 7 C 1.37872 * 119.99906 * 271.88929 * 5 3 2 8 8 N 1.31520 * 119.99940 * 183.16596 * 7 5 3 9 9 Si 1.86796 * 120.00211 * 3.16731 * 7 5 3 10 10 H 1.48498 * 109.46998 * 264.94017 * 9 7 5 11 11 H 1.48495 * 109.47385 * 24.94293 * 9 7 5 12 12 H 1.48503 * 109.47101 * 144.94408 * 9 7 5 13 13 O 1.45199 * 109.47222 * 295.10900 * 3 2 1 14 14 C 1.34229 * 116.99904 * 90.00091 * 13 3 2 15 15 O 1.20837 * 119.99965 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00322 * 180.02562 * 14 13 3 17 17 C 1.52998 * 109.47142 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.47390 * 54.99912 * 17 16 14 19 19 N 1.46494 * 109.46999 * 294.99367 * 17 16 14 20 20 C 1.34769 * 120.00625 * 294.52587 * 19 17 16 21 21 N 1.34779 * 120.00391 * 185.00080 * 20 19 17 22 22 O 1.21592 * 119.99724 * 4.99299 * 20 19 17 23 23 C 1.50703 * 109.46586 * 174.99739 * 17 16 14 24 24 C 1.38263 * 119.99578 * 158.84201 * 23 17 16 25 25 C 1.38212 * 119.99806 * 179.97438 * 24 23 17 26 26 C 1.38254 * 119.99837 * 359.95724 * 25 24 23 27 27 C 1.38207 * 120.00637 * 359.97438 * 26 25 24 28 28 C 1.50704 * 120.00629 * 180.02562 * 27 26 25 29 29 C 1.38213 * 120.00305 * 338.56602 * 23 17 16 30 30 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46967 * 299.99568 * 1 2 3 32 32 H 1.09005 * 109.47416 * 59.99596 * 1 2 3 33 33 H 1.09008 * 109.46790 * 240.00289 * 2 1 3 34 34 H 1.08995 * 109.47142 * 120.00853 * 2 1 3 35 35 H 0.96990 * 120.00134 * 180.02562 * 8 7 5 36 36 H 1.09009 * 109.46597 * 299.99843 * 16 14 13 37 37 H 1.08997 * 109.47102 * 59.99289 * 16 14 13 38 38 H 0.97006 * 119.99986 * 114.52679 * 19 17 16 39 39 H 0.96994 * 120.00388 * 359.97438 * 21 20 19 40 40 H 0.97006 * 119.99579 * 179.97438 * 21 20 19 41 41 H 1.08002 * 120.00091 * 359.97438 * 24 23 17 42 42 H 1.08002 * 119.99830 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.99821 * 180.02562 * 26 25 24 44 44 H 1.09003 * 109.46462 * 89.99926 * 28 27 26 45 45 H 1.08997 * 109.47441 * 209.99992 * 28 27 26 46 46 H 1.09001 * 109.46610 * 330.00145 * 28 27 26 47 47 H 1.07992 * 119.99735 * 0.02562 * 29 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9809 0.8430 5 6 3.5422 1.4441 0.1212 6 1 4.1556 1.4491 -0.7677 7 6 4.1333 1.4395 1.3667 8 7 5.4426 1.5038 1.4735 9 14 3.0747 1.3417 2.9026 10 1 2.8241 2.7113 3.4190 11 1 1.7806 0.6931 2.5715 12 1 3.7779 0.5431 3.9385 13 8 1.6537 2.0925 -1.2396 14 6 0.4705 2.7263 -1.2523 15 8 -0.2197 2.7372 -0.2605 16 6 0.0024 3.4233 -2.5037 17 6 -1.3652 4.0610 -2.2511 18 1 -1.3049 4.7187 -1.3840 19 7 -2.3548 3.0105 -1.9995 20 6 -2.6804 2.1430 -2.9781 21 7 -3.6621 1.2411 -2.7800 22 8 -2.0885 2.1740 -4.0397 23 6 -1.7776 4.8604 -3.4603 24 6 -3.1109 5.1619 -3.6677 25 6 -3.4891 5.8955 -4.7763 26 6 -2.5341 6.3286 -5.6773 27 6 -1.2012 6.0285 -5.4692 28 6 -0.1601 6.5011 -6.4511 29 6 -0.8224 5.2971 -4.3587 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 5.8585 1.5001 2.3497 36 1 0.7190 4.1977 -2.7779 37 1 -0.0779 2.6993 -3.3145 38 1 -2.7758 2.9394 -1.1285 39 1 -4.1342 1.2161 -1.9330 40 1 -3.8967 0.6169 -3.4846 41 1 -3.8569 4.8242 -2.9635 42 1 -4.5307 6.1307 -4.9386 43 1 -2.8296 6.9022 -6.5434 44 1 0.2027 7.4841 -6.1507 45 1 0.6711 5.7962 -6.4667 46 1 -0.6013 6.5648 -7.4457 47 1 0.2194 5.0650 -4.1945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:07 Heat of formation + Delta-G solvation = -124.301205 kcal Electronic energy + Delta-G solvation = -29890.531131 eV Core-core repulsion = 25844.113203 eV Total energy + Delta-G solvation = -4046.417928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.89197 -40.92903 -39.85170 -37.85861 -36.29161 -35.36412 -34.72488 -33.95217 -33.39336 -32.37785 -30.69789 -29.66311 -27.72908 -26.14390 -24.80699 -23.25547 -22.79413 -22.16730 -21.24584 -20.67578 -19.58033 -19.22515 -18.51429 -18.26981 -17.59990 -17.36918 -16.97943 -16.37693 -16.03490 -15.95183 -15.61643 -15.56068 -15.15479 -15.01429 -14.80843 -14.50766 -14.29221 -14.06676 -13.88014 -13.78732 -13.62437 -13.24964 -13.14981 -12.95539 -12.94109 -12.85574 -12.62010 -12.57338 -11.95308 -11.91756 -11.83443 -11.74110 -11.41161 -11.25978 -11.17896 -11.06847 -10.72898 -10.57622 -10.07740 -9.62470 -9.39010 -8.45270 -6.54979 0.47603 0.55503 1.26904 1.30235 1.39082 1.42290 1.96007 2.07447 2.22142 2.27616 2.89473 2.92844 3.60952 3.68207 3.75556 4.01269 4.06282 4.10271 4.18045 4.22164 4.24736 4.28906 4.42761 4.45837 4.56567 4.59432 4.67687 4.79307 4.84605 4.87339 4.99866 5.01370 5.08904 5.10043 5.20486 5.33933 5.35286 5.44948 5.46818 5.60092 5.70736 5.74482 5.75719 5.97023 6.10362 6.18378 6.20886 6.52495 6.97372 7.14244 7.16302 7.75991 8.70621 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.003399 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.128870 B = 8235.948690 C = 9272.666808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 C 0.199 3.801 4 H 0.040 0.960 5 C -0.538 4.538 6 H 0.039 0.961 7 C 0.030 3.970 8 N -0.929 5.929 9 Si 0.931 3.069 10 H -0.269 1.269 11 H -0.236 1.236 12 H -0.270 1.270 13 O -0.367 6.367 14 C 0.455 3.545 15 O -0.527 6.527 16 C -0.130 4.130 17 C 0.229 3.771 18 H 0.119 0.881 19 N -0.723 5.723 20 C 0.700 3.300 21 N -0.852 5.852 22 O -0.624 6.624 23 C -0.080 4.080 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.131 4.131 27 C -0.095 4.095 28 C -0.114 4.114 29 C -0.129 4.129 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.275 0.725 36 H 0.124 0.876 37 H 0.110 0.890 38 H 0.413 0.587 39 H 0.411 0.589 40 H 0.418 0.582 41 H 0.126 0.874 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.080 0.920 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.067 7.237 -9.568 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.173 4.173 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.575 4.575 6 H 0.058 0.942 7 C -0.170 4.170 8 N -0.567 5.567 9 Si 0.752 3.248 10 H -0.194 1.194 11 H -0.159 1.159 12 H -0.195 1.195 13 O -0.283 6.283 14 C 0.300 3.700 15 O -0.418 6.418 16 C -0.168 4.168 17 C 0.122 3.878 18 H 0.137 0.863 19 N -0.379 5.379 20 C 0.398 3.602 21 N -0.421 5.421 22 O -0.505 6.505 23 C -0.081 4.081 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.095 4.095 28 C -0.170 4.170 29 C -0.147 4.147 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.249 0.751 39 H 0.241 0.759 40 H 0.251 0.749 41 H 0.144 0.856 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -22.507 7.360 -9.942 25.682 hybrid contribution -0.021 -0.584 1.277 1.404 sum -22.528 6.776 -8.664 25.070 Atomic orbital electron populations 1.21745 0.94778 1.01422 1.01063 1.22104 0.96081 0.97214 1.01932 1.20652 0.93489 0.90079 0.81270 0.94191 1.20987 0.89947 1.52798 0.93806 0.94240 1.25702 0.96201 0.93101 1.01988 1.69994 1.11026 1.49709 1.25979 0.86008 0.80456 0.79584 0.78710 1.19436 1.15860 1.19477 1.86576 1.36573 1.63121 1.42049 1.23984 0.79232 0.76168 0.90661 1.90512 1.55423 1.59319 1.36498 1.22051 0.98865 1.01956 0.93936 1.19272 0.84524 0.87071 0.96911 0.86317 1.44886 1.45491 1.32505 1.15029 1.16209 0.80707 0.79735 0.83575 1.42824 1.39081 1.38330 1.21897 1.90938 1.56856 1.74953 1.27722 1.19857 0.94499 0.97817 0.95974 1.20946 0.94965 0.99077 0.98595 1.21345 1.00340 0.97988 0.94349 1.21291 0.92373 1.00952 1.00302 1.20185 0.95678 0.97672 0.96007 1.20829 0.96875 1.01760 0.97564 1.21155 0.99706 0.99165 0.94680 0.91439 0.92944 0.94207 0.92529 0.91333 0.91591 0.85840 0.87198 0.75094 0.75898 0.74924 0.85596 0.84207 0.84340 0.90161 0.91742 0.90475 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.56 71.98 0.62 -4.14 16 2 C -0.14 -5.88 5.17 30.59 0.16 -5.72 16 3 C 0.20 9.87 1.79 29.85 0.05 9.93 16 4 H 0.04 2.02 4.97 -2.39 -0.01 2.01 16 5 C -0.54 -31.62 9.25 25.60 0.24 -31.38 16 6 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 7 C 0.03 1.75 5.47 84.65 0.46 2.21 16 8 N -0.93 -56.93 13.96 21.45 0.30 -56.63 16 9 Si 0.93 43.02 26.25 68.60 1.80 44.82 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.24 -10.09 5.77 99.48 0.57 -9.52 16 12 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 13 O -0.37 -17.10 9.81 -51.40 -0.50 -17.61 16 14 C 0.45 17.26 6.27 71.24 0.45 17.71 16 15 O -0.53 -19.88 12.50 21.93 0.27 -19.61 16 16 C -0.13 -3.89 4.45 29.85 0.13 -3.75 16 17 C 0.23 5.56 2.57 44.25 0.11 5.67 16 18 H 0.12 2.65 7.96 -2.39 -0.02 2.63 16 19 N -0.72 -15.60 3.74 -461.43 -1.73 -17.33 16 20 C 0.70 16.92 7.73 179.06 1.38 18.30 16 21 N -0.85 -13.09 8.88 -184.74 -1.64 -14.73 16 22 O -0.62 -20.44 14.44 -4.01 -0.06 -20.50 16 23 C -0.08 -1.92 4.10 -19.86 -0.08 -2.01 16 24 C -0.12 -2.50 8.80 22.27 0.20 -2.30 16 25 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 26 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 27 C -0.10 -2.06 5.88 -19.87 -0.12 -2.17 16 28 C -0.11 -1.90 10.01 71.24 0.71 -1.18 16 29 C -0.13 -3.13 8.78 22.27 0.20 -2.94 16 30 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.88 7.79 -2.39 -0.02 1.86 16 32 H 0.04 1.44 6.06 -2.38 -0.01 1.42 16 33 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 34 H 0.07 2.97 6.49 -2.39 -0.02 2.95 16 35 H 0.27 15.50 8.31 -92.72 -0.77 14.73 16 36 H 0.12 3.31 6.32 -2.38 -0.02 3.30 16 37 H 0.11 3.69 6.30 -2.39 -0.02 3.67 16 38 H 0.41 7.13 8.85 -92.70 -0.82 6.31 16 39 H 0.41 3.74 8.85 -92.71 -0.82 2.92 16 40 H 0.42 5.73 8.93 -92.70 -0.83 4.90 16 41 H 0.13 2.29 7.68 -2.91 -0.02 2.26 16 42 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 46 H 0.08 1.06 8.09 -2.39 -0.02 1.05 16 47 H 0.12 2.94 5.87 -2.91 -0.02 2.92 16 Total: -1.00 -75.80 377.27 1.83 -73.96 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: -1.57 Total: 33.83 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.95 Total: -6.21 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -3.07 Total: -88.69 kcal Atomic # 8 Polarization: -57.42 SS G_CDS: -0.29 Total: -57.71 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.80 Total: 44.82 kcal Total: -75.80 1.83 -73.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.336 kcal (2) G-P(sol) polarization free energy of solvation -75.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds