Wall clock time and date at job start Tue Mar 31 2020 18:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47459 * 2 1 4 4 H 1.09001 * 109.46982 * 305.00235 * 3 2 1 5 5 C 1.50703 * 109.47324 * 185.00003 * 3 2 1 6 6 H 1.07994 * 120.00208 * 240.00068 * 5 3 2 7 7 C 1.37878 * 119.99758 * 60.00044 * 5 3 2 8 8 N 1.31509 * 120.00051 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00008 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47158 * 59.99547 * 9 7 5 11 11 H 1.48496 * 109.47326 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47002 * 299.99961 * 9 7 5 13 13 O 1.45203 * 109.46980 * 65.00259 * 3 2 1 14 14 C 1.34234 * 116.99596 * 269.99549 * 13 3 2 15 15 O 1.20823 * 120.00047 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99569 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.46908 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.46979 * 55.00560 * 17 16 14 19 19 N 1.46497 * 109.47279 * 295.00214 * 17 16 14 20 20 C 1.34775 * 120.00068 * 296.22077 * 19 17 16 21 21 N 1.34784 * 119.99966 * 185.17715 * 20 19 17 22 22 O 1.21586 * 119.99837 * 5.18073 * 20 19 17 23 23 C 1.50696 * 109.47251 * 175.00002 * 17 16 14 24 24 C 1.38258 * 120.00107 * 154.66804 * 23 17 16 25 25 C 1.38215 * 119.99546 * 180.02562 * 24 23 17 26 26 C 1.38251 * 120.00448 * 359.96066 * 25 24 23 27 27 C 1.38206 * 120.00106 * 359.97438 * 26 25 24 28 28 C 1.50701 * 120.00042 * 180.02562 * 27 26 25 29 29 C 1.38218 * 119.99821 * 334.40139 * 23 17 16 30 30 H 1.08995 * 109.46667 * 59.99622 * 1 2 3 31 31 H 1.08997 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46512 * 300.00168 * 1 2 3 33 33 H 1.09002 * 109.46964 * 239.99658 * 2 1 3 34 34 H 1.09000 * 109.47096 * 120.00510 * 2 1 3 35 35 H 0.97000 * 120.00016 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46882 * 300.00604 * 16 14 13 37 37 H 1.09002 * 109.46861 * 60.00608 * 16 14 13 38 38 H 0.97007 * 120.00267 * 116.22031 * 19 17 16 39 39 H 0.96994 * 119.99651 * 0.02562 * 21 20 19 40 40 H 0.96995 * 119.99452 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.00119 * 359.97438 * 24 23 17 42 42 H 1.08012 * 119.99178 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99936 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47225 * 90.00130 * 28 27 26 45 45 H 1.09008 * 109.46912 * 209.99837 * 28 27 26 46 46 H 1.08996 * 109.47478 * 329.99900 * 28 27 26 47 47 H 1.08000 * 120.00129 * 359.97438 * 29 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6522 7 6 4.1433 0.8782 -1.2280 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8798 -1.3812 10 1 6.5967 0.1450 -0.2344 11 1 6.3978 0.2165 -2.6505 12 1 6.5006 2.2797 -1.3809 13 8 1.6560 2.0916 1.2408 14 6 0.4729 2.7255 1.2560 15 8 -0.2190 2.7371 0.2655 16 6 0.0072 3.4216 2.5088 17 6 -1.3614 4.0585 2.2596 18 1 -2.0558 3.2987 1.9009 19 7 -1.2321 5.1159 1.2539 20 6 -0.4805 6.2041 1.5130 21 7 -0.4448 7.2238 0.6322 22 8 0.1655 6.2660 2.5412 23 6 -1.8824 4.6486 3.5446 24 6 -2.7884 5.6923 3.5087 25 6 -3.2658 6.2338 4.6874 26 6 -2.8381 5.7311 5.9022 27 6 -1.9335 4.6869 5.9381 28 6 -1.4677 4.1386 7.2623 29 6 -1.4588 4.1426 4.7591 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8293 -0.0620 -2.9495 36 1 -0.0717 2.6970 3.3192 37 1 0.7242 4.1958 2.7822 38 1 -1.6875 5.0327 0.4014 39 1 -0.9604 7.1745 -0.1878 40 1 0.0959 8.0071 0.8190 41 1 -3.1224 6.0851 2.5598 42 1 -3.9732 7.0495 4.6593 43 1 -3.2115 6.1540 6.8232 44 1 -2.1320 3.3334 7.5762 45 1 -0.4532 3.7533 7.1594 46 1 -1.4809 4.9324 8.0092 47 1 -0.7547 3.3241 4.7871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:10 Heat of formation + Delta-G solvation = -103.120020 kcal Electronic energy + Delta-G solvation = -29676.119365 eV Core-core repulsion = 25630.619922 eV Total energy + Delta-G solvation = -4045.499443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.65924 -39.32619 -38.93230 -36.15199 -35.02880 -33.71485 -33.46814 -32.58124 -31.48954 -31.30396 -29.48700 -27.23326 -26.94735 -24.93898 -23.17697 -22.08434 -21.74735 -20.65987 -19.76265 -19.28563 -18.45140 -17.43172 -17.02208 -16.64639 -16.37529 -15.59448 -15.52609 -15.10969 -14.87954 -14.60839 -14.47593 -14.41254 -14.03343 -13.75677 -13.23663 -13.06759 -12.97031 -12.74449 -12.67913 -12.20921 -12.16175 -11.73824 -11.63842 -11.39207 -11.26503 -11.16821 -11.02488 -10.95444 -10.92302 -10.64400 -10.27158 -10.05824 -9.78254 -9.59718 -9.52493 -9.31920 -9.07204 -8.78572 -8.75123 -8.53061 -8.43642 -6.17390 -4.23957 1.34277 1.40783 2.98602 3.10172 3.27192 3.30368 3.32853 3.33485 3.65716 3.82962 4.34334 4.50177 4.75873 4.77912 4.84641 5.05574 5.08614 5.14507 5.21750 5.33104 5.46177 5.50360 5.53033 5.68621 5.74925 5.90496 6.03812 6.09724 6.11210 6.22674 6.29224 6.41067 6.44703 6.47574 6.57642 6.67558 6.80182 6.87954 6.96450 6.97347 7.01294 7.17525 7.29517 7.63769 7.75899 7.98030 8.04816 8.18787 8.67932 8.74097 8.93703 9.41355 10.89257 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.003075 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.944916 B = 9104.927415 C = 9554.082951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.045 0.955 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.910 3.090 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.357 6.357 14 C 0.458 3.542 15 O -0.522 6.522 16 C -0.142 4.142 17 C 0.225 3.775 18 H 0.110 0.890 19 N -0.730 5.730 20 C 0.706 3.294 21 N -0.870 5.870 22 O -0.584 6.584 23 C -0.071 4.071 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.085 4.085 28 C -0.114 4.114 29 C -0.108 4.108 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.403 0.597 39 H 0.395 0.605 40 H 0.412 0.588 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.440 10.370 10.973 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.063 0.937 5 C -0.559 4.559 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.737 3.263 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.200 1.200 13 O -0.273 6.273 14 C 0.302 3.698 15 O -0.413 6.413 16 C -0.180 4.180 17 C 0.119 3.881 18 H 0.127 0.873 19 N -0.385 5.385 20 C 0.404 3.596 21 N -0.437 5.437 22 O -0.462 6.462 23 C -0.072 4.072 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.144 4.144 27 C -0.085 4.085 28 C -0.171 4.171 29 C -0.126 4.126 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.142 0.858 38 H 0.238 0.762 39 H 0.223 0.777 40 H 0.244 0.756 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.095 10.130 11.392 20.762 hybrid contribution 0.714 0.253 -1.109 1.343 sum -13.382 10.383 10.282 19.814 Atomic orbital electron populations 1.21841 0.98377 0.98895 1.00664 1.22015 0.92640 0.99438 1.03303 1.20612 0.94875 0.88678 0.78765 0.93679 1.21038 0.89884 1.38826 1.06183 0.91457 1.24871 0.99176 0.94780 0.95071 1.69877 1.35409 1.37915 1.09508 0.86358 0.84004 0.78495 0.77446 1.19908 1.21048 1.20019 1.86483 1.34422 1.62395 1.43965 1.23139 0.80752 0.76477 0.89477 1.90540 1.55721 1.58983 1.36077 1.21997 0.98799 1.01562 0.95642 1.19303 0.95465 0.87842 0.85494 0.87271 1.44959 1.53942 1.19714 1.19918 1.15995 0.79936 0.80190 0.83447 1.42991 1.54993 1.21317 1.24443 1.90945 1.47188 1.81089 1.26932 1.19924 0.96471 0.96582 0.94261 1.20779 0.97424 0.96374 0.98012 1.21015 1.00189 0.99817 0.92529 1.20954 0.98419 0.97303 0.97680 1.19857 0.97045 0.96317 0.95252 1.20789 1.01590 1.00936 0.93766 1.20974 0.99897 1.00555 0.91224 0.92879 0.94921 0.94941 0.87421 0.94042 0.92404 0.87606 0.85800 0.76240 0.77727 0.75615 0.86652 0.86507 0.86532 0.91283 0.91324 0.91752 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.57 37.16 0.32 -2.68 16 2 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.94 2.25 -27.88 -0.06 5.88 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.95 16 5 C -0.52 -14.79 8.90 -34.44 -0.31 -15.10 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.11 11.29 55.43 0.63 -24.48 16 9 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 O -0.36 -8.58 9.81 -39.27 -0.39 -8.96 16 14 C 0.46 9.29 6.28 36.01 0.23 9.52 16 15 O -0.52 -10.97 12.50 -18.75 -0.23 -11.21 16 16 C -0.14 -2.24 4.56 -27.88 -0.13 -2.37 16 17 C 0.22 3.00 2.58 -69.09 -0.18 2.82 16 18 H 0.11 1.36 7.96 -51.93 -0.41 0.94 16 19 N -0.73 -9.24 3.64 -59.82 -0.22 -9.45 16 20 C 0.71 9.90 7.60 -86.91 -0.66 9.24 16 21 N -0.87 -8.65 8.88 27.64 0.25 -8.40 16 22 O -0.58 -10.39 14.38 5.29 0.08 -10.31 16 23 C -0.07 -0.91 4.25 -104.62 -0.44 -1.36 16 24 C -0.11 -1.27 8.69 -39.58 -0.34 -1.62 16 25 C -0.12 -1.28 10.05 -39.59 -0.40 -1.67 16 26 C -0.13 -1.34 9.70 -39.59 -0.38 -1.73 16 27 C -0.08 -0.95 5.88 -104.62 -0.62 -1.57 16 28 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 29 C -0.11 -1.34 8.79 -39.58 -0.35 -1.69 16 30 H 0.05 1.18 7.80 -51.93 -0.40 0.77 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 33 H 0.11 2.89 5.95 -51.93 -0.31 2.58 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.11 1.43 6.24 -51.93 -0.32 1.11 16 37 H 0.12 2.20 6.16 -51.93 -0.32 1.88 16 38 H 0.40 4.35 8.85 -40.82 -0.36 3.99 16 39 H 0.40 2.79 8.85 -40.82 -0.36 2.43 16 40 H 0.41 3.70 8.93 -40.82 -0.36 3.34 16 41 H 0.12 1.23 7.50 -52.49 -0.39 0.83 16 42 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.07 0.59 8.09 -51.92 -0.42 0.17 16 46 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 47 H 0.13 1.45 5.94 -52.49 -0.31 1.13 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -33.71 380.46 -9.13 -42.84 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -6.75 Total: 12.82 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -3.20 Total: -4.82 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.65 Total: -42.34 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.54 Total: -30.49 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.71 -9.13 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.280 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds