Wall clock time and date at job start Tue Mar 31 2020 18:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47459 * 2 1 4 4 H 1.09001 * 109.46982 * 305.00235 * 3 2 1 5 5 C 1.50703 * 109.47324 * 185.00003 * 3 2 1 6 6 H 1.07994 * 120.00208 * 240.00068 * 5 3 2 7 7 C 1.37878 * 119.99758 * 60.00044 * 5 3 2 8 8 N 1.31509 * 120.00051 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00008 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47158 * 59.99547 * 9 7 5 11 11 H 1.48496 * 109.47326 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47002 * 299.99961 * 9 7 5 13 13 O 1.45203 * 109.46980 * 65.00259 * 3 2 1 14 14 C 1.34234 * 116.99596 * 269.99549 * 13 3 2 15 15 O 1.20823 * 120.00047 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99569 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.46908 * 180.02562 * 16 14 13 18 18 H 1.09003 * 109.46979 * 55.00560 * 17 16 14 19 19 N 1.46497 * 109.47279 * 295.00214 * 17 16 14 20 20 C 1.34775 * 120.00068 * 296.22077 * 19 17 16 21 21 N 1.34784 * 119.99966 * 185.17715 * 20 19 17 22 22 O 1.21586 * 119.99837 * 5.18073 * 20 19 17 23 23 C 1.50696 * 109.47251 * 175.00002 * 17 16 14 24 24 C 1.38258 * 120.00107 * 154.66804 * 23 17 16 25 25 C 1.38215 * 119.99546 * 180.02562 * 24 23 17 26 26 C 1.38251 * 120.00448 * 359.96066 * 25 24 23 27 27 C 1.38206 * 120.00106 * 359.97438 * 26 25 24 28 28 C 1.50701 * 120.00042 * 180.02562 * 27 26 25 29 29 C 1.38218 * 119.99821 * 334.40139 * 23 17 16 30 30 H 1.08995 * 109.46667 * 59.99622 * 1 2 3 31 31 H 1.08997 * 109.47318 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46512 * 300.00168 * 1 2 3 33 33 H 1.09002 * 109.46964 * 239.99658 * 2 1 3 34 34 H 1.09000 * 109.47096 * 120.00510 * 2 1 3 35 35 H 0.97000 * 120.00016 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.46882 * 300.00604 * 16 14 13 37 37 H 1.09002 * 109.46861 * 60.00608 * 16 14 13 38 38 H 0.97007 * 120.00267 * 116.22031 * 19 17 16 39 39 H 0.96994 * 119.99651 * 0.02562 * 21 20 19 40 40 H 0.96995 * 119.99452 * 179.97438 * 21 20 19 41 41 H 1.07996 * 120.00119 * 359.97438 * 24 23 17 42 42 H 1.08012 * 119.99178 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.99936 * 180.02562 * 26 25 24 44 44 H 1.09001 * 109.47225 * 90.00130 * 28 27 26 45 45 H 1.09008 * 109.46912 * 209.99837 * 28 27 26 46 46 H 1.08996 * 109.47478 * 329.99900 * 28 27 26 47 47 H 1.08000 * 120.00129 * 359.97438 * 29 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8887 0.6522 7 6 4.1433 0.8782 -1.2280 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8798 -1.3812 10 1 6.5967 0.1450 -0.2344 11 1 6.3978 0.2165 -2.6505 12 1 6.5006 2.2797 -1.3809 13 8 1.6560 2.0916 1.2408 14 6 0.4729 2.7255 1.2560 15 8 -0.2190 2.7371 0.2655 16 6 0.0072 3.4216 2.5088 17 6 -1.3614 4.0585 2.2596 18 1 -2.0558 3.2987 1.9009 19 7 -1.2321 5.1159 1.2539 20 6 -0.4805 6.2041 1.5130 21 7 -0.4448 7.2238 0.6322 22 8 0.1655 6.2660 2.5412 23 6 -1.8824 4.6486 3.5446 24 6 -2.7884 5.6923 3.5087 25 6 -3.2658 6.2338 4.6874 26 6 -2.8381 5.7311 5.9022 27 6 -1.9335 4.6869 5.9381 28 6 -1.4677 4.1386 7.2623 29 6 -1.4588 4.1426 4.7591 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8293 -0.0620 -2.9495 36 1 -0.0717 2.6970 3.3192 37 1 0.7242 4.1958 2.7822 38 1 -1.6875 5.0327 0.4014 39 1 -0.9604 7.1745 -0.1878 40 1 0.0959 8.0071 0.8190 41 1 -3.1224 6.0851 2.5598 42 1 -3.9732 7.0495 4.6593 43 1 -3.2115 6.1540 6.8232 44 1 -2.1320 3.3334 7.5762 45 1 -0.4532 3.7533 7.1594 46 1 -1.4809 4.9324 8.0092 47 1 -0.7547 3.3241 4.7871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:09 Heat of formation + Delta-G solvation = -124.766286 kcal Electronic energy + Delta-G solvation = -29677.058018 eV Core-core repulsion = 25630.619922 eV Total energy + Delta-G solvation = -4046.438095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.86487 -40.88376 -39.86417 -37.78932 -36.29501 -35.48629 -34.75829 -33.45377 -33.30038 -32.39393 -30.67861 -29.20784 -27.71053 -26.16505 -25.06432 -23.18008 -22.80454 -22.14139 -21.19907 -20.67059 -19.53454 -18.84371 -18.48771 -18.27391 -17.55572 -17.15851 -16.97896 -16.46898 -16.08505 -15.91997 -15.61337 -15.55040 -15.18632 -14.79507 -14.74770 -14.46981 -14.14534 -14.09218 -13.83393 -13.47663 -13.33224 -13.16461 -13.14194 -12.97560 -12.87102 -12.75991 -12.60867 -12.52572 -12.16192 -11.92178 -11.83112 -11.72917 -11.42851 -11.27179 -11.09355 -10.80803 -10.60770 -10.51647 -10.09295 -9.62848 -9.39205 -8.28410 -6.44745 0.47601 0.55280 1.39304 1.42496 1.44829 1.50936 1.98246 2.09526 2.24270 2.41995 2.90587 3.00741 3.59740 3.70261 3.77025 4.03166 4.08009 4.09743 4.27826 4.30611 4.40229 4.43307 4.44696 4.57272 4.59594 4.68655 4.80125 4.84157 4.87767 4.89277 5.01930 5.12208 5.20223 5.24776 5.34506 5.42003 5.44379 5.51335 5.59952 5.69297 5.73588 5.75342 5.93940 6.00496 6.07435 6.17504 6.18851 6.59766 7.04788 7.12227 7.28032 7.72271 8.77690 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.003075 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.944916 B = 9104.927415 C = 9554.082951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.130 4.130 3 C 0.229 3.771 4 H 0.009 0.991 5 C -0.555 4.555 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.976 3.024 10 H -0.266 1.266 11 H -0.274 1.274 12 H -0.272 1.272 13 O -0.372 6.372 14 C 0.453 3.547 15 O -0.530 6.530 16 C -0.128 4.128 17 C 0.228 3.772 18 H 0.119 0.881 19 N -0.725 5.725 20 C 0.699 3.301 21 N -0.853 5.853 22 O -0.624 6.624 23 C -0.082 4.082 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.131 4.131 27 C -0.094 4.094 28 C -0.113 4.113 29 C -0.128 4.128 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.042 0.958 35 H 0.271 0.729 36 H 0.129 0.871 37 H 0.107 0.893 38 H 0.412 0.588 39 H 0.411 0.589 40 H 0.418 0.582 41 H 0.123 0.877 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.148 10.780 11.874 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.168 4.168 3 C 0.176 3.824 4 H 0.027 0.973 5 C -0.592 4.592 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.799 3.201 10 H -0.190 1.190 11 H -0.199 1.199 12 H -0.197 1.197 13 O -0.289 6.289 14 C 0.297 3.703 15 O -0.420 6.420 16 C -0.166 4.166 17 C 0.122 3.878 18 H 0.137 0.863 19 N -0.381 5.381 20 C 0.397 3.603 21 N -0.422 5.422 22 O -0.505 6.505 23 C -0.084 4.084 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.149 4.149 27 C -0.094 4.094 28 C -0.170 4.170 29 C -0.147 4.147 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.147 0.853 37 H 0.125 0.875 38 H 0.248 0.752 39 H 0.241 0.759 40 H 0.251 0.749 41 H 0.141 0.859 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.849 10.560 12.255 21.958 hybrid contribution 0.868 0.192 -1.392 1.652 sum -13.981 10.751 10.862 20.713 Atomic orbital electron populations 1.21691 0.95777 1.00611 1.00365 1.21857 0.94927 0.97918 1.02101 1.20297 0.94132 0.89351 0.78663 0.97344 1.21323 0.91031 1.40066 1.06824 0.92336 1.25727 1.03985 0.93861 0.94353 1.69987 1.37333 1.37773 1.09786 0.85341 0.78073 0.78674 0.77985 1.19025 1.19868 1.19683 1.86477 1.36561 1.63236 1.42644 1.23988 0.79506 0.75918 0.90879 1.90525 1.55575 1.59103 1.36826 1.22041 0.99668 1.01112 0.93796 1.19294 0.93918 0.88177 0.86394 0.86312 1.44909 1.53657 1.19290 1.20227 1.16232 0.79743 0.80909 0.83446 1.42832 1.54639 1.20439 1.24305 1.90915 1.48853 1.81945 1.28780 1.19883 0.97279 0.97356 0.93835 1.20939 0.97531 0.96273 0.98925 1.21343 1.00274 1.00165 0.92256 1.21300 0.97973 0.96943 0.98668 1.20195 0.96955 0.96403 0.95875 1.20829 1.01634 1.01676 0.92815 1.21144 1.00553 1.01188 0.91766 0.94213 0.92161 0.94079 0.89694 0.93960 0.91997 0.85335 0.87464 0.75207 0.75907 0.74900 0.85921 0.84286 0.84230 0.90014 0.91576 0.90527 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 8.57 71.98 0.62 -4.76 16 2 C -0.13 -6.52 5.49 30.59 0.17 -6.35 16 3 C 0.23 12.54 2.25 29.85 0.07 12.60 16 4 H 0.01 0.53 7.16 -2.39 -0.02 0.52 16 5 C -0.55 -32.27 8.90 25.60 0.23 -32.04 16 6 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 7 C 0.02 1.16 5.29 84.66 0.45 1.61 16 8 N -0.91 -52.11 11.29 21.45 0.24 -51.87 16 9 Si 0.98 43.60 29.54 68.60 2.03 45.62 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 O -0.37 -18.35 9.81 -51.45 -0.50 -18.85 16 14 C 0.45 18.58 6.28 71.24 0.45 19.02 16 15 O -0.53 -22.47 12.50 21.97 0.27 -22.19 16 16 C -0.13 -4.05 4.56 29.85 0.14 -3.91 16 17 C 0.23 5.97 2.58 44.24 0.11 6.09 16 18 H 0.12 2.84 7.96 -2.39 -0.02 2.82 16 19 N -0.73 -18.02 3.64 -461.42 -1.68 -19.70 16 20 C 0.70 19.37 7.60 179.05 1.36 20.73 16 21 N -0.85 -16.25 8.88 -184.74 -1.64 -17.89 16 22 O -0.62 -22.35 14.38 -3.99 -0.06 -22.41 16 23 C -0.08 -2.05 4.25 -19.87 -0.08 -2.14 16 24 C -0.12 -2.67 8.69 22.27 0.19 -2.47 16 25 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 26 C -0.13 -2.54 9.70 22.27 0.22 -2.32 16 27 C -0.09 -2.00 5.88 -19.87 -0.12 -2.11 16 28 C -0.11 -1.78 10.01 71.24 0.71 -1.06 16 29 C -0.13 -3.09 8.79 22.27 0.20 -2.90 16 30 H 0.04 1.76 7.80 -2.39 -0.02 1.74 16 31 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.04 1.63 6.06 -2.39 -0.01 1.62 16 33 H 0.08 4.66 5.95 -2.39 -0.01 4.65 16 34 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 36 H 0.13 3.42 6.24 -2.39 -0.01 3.41 16 37 H 0.11 3.89 6.16 -2.39 -0.01 3.87 16 38 H 0.41 8.59 8.85 -92.70 -0.82 7.77 16 39 H 0.41 5.28 8.85 -92.71 -0.82 4.46 16 40 H 0.42 7.16 8.93 -92.71 -0.83 6.33 16 41 H 0.12 2.46 7.50 -2.91 -0.02 2.44 16 42 H 0.14 2.05 8.06 -2.90 -0.02 2.02 16 43 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 44 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.06 8.09 -2.38 -0.02 1.04 16 46 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 47 H 0.13 2.88 5.94 -2.91 -0.02 2.86 16 Total: -1.00 -73.75 380.46 2.15 -71.59 By element: Atomic # 1 Polarization: 39.36 SS G_CDS: -1.44 Total: 37.92 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 4.93 Total: -2.23 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -3.08 Total: -89.46 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -0.29 Total: -63.45 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -73.75 2.15 -71.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.173 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds