Wall clock time and date at job start Tue Mar 31 2020 18:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.09002 * 109.47303 * 304.99646 * 3 2 1 5 5 C 1.50701 * 109.46854 * 185.00009 * 3 2 1 6 6 H 1.08002 * 119.99672 * 239.99896 * 5 3 2 7 7 C 1.37872 * 120.00471 * 59.99821 * 5 3 2 8 8 N 1.31515 * 119.99865 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00527 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47259 * 89.99977 * 9 7 5 11 11 H 1.48499 * 109.47693 * 210.00237 * 9 7 5 12 12 H 1.48510 * 109.47030 * 330.00241 * 9 7 5 13 13 O 1.45196 * 109.47128 * 65.00180 * 3 2 1 14 14 C 1.34229 * 116.99780 * 269.99847 * 13 3 2 15 15 O 1.20826 * 119.99896 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00099 * 180.02562 * 14 13 3 17 17 C 1.53006 * 109.47201 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.47151 * 305.00071 * 17 16 14 19 19 N 1.46499 * 109.46568 * 65.00304 * 17 16 14 20 20 C 1.34788 * 119.99970 * 202.73344 * 19 17 16 21 21 N 1.34764 * 119.99953 * 185.39034 * 20 19 17 22 22 O 1.21586 * 119.99726 * 5.38956 * 20 19 17 23 23 C 1.50702 * 109.47111 * 185.00055 * 17 16 14 24 24 C 1.38259 * 119.99819 * 285.21707 * 23 17 16 25 25 C 1.38211 * 119.99917 * 179.76793 * 24 23 17 26 26 C 1.38265 * 119.99639 * 0.50639 * 25 24 23 27 27 C 1.38214 * 119.99966 * 359.74634 * 26 25 24 28 28 C 1.50702 * 119.99753 * 179.97438 * 27 26 25 29 29 C 1.38207 * 119.99879 * 105.49202 * 23 17 16 30 30 H 1.09001 * 109.46973 * 300.00374 * 1 2 3 31 31 H 1.09002 * 109.46435 * 60.00418 * 1 2 3 32 32 H 1.08991 * 109.47034 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46973 * 239.99625 * 2 1 3 34 34 H 1.09002 * 109.46942 * 120.00157 * 2 1 3 35 35 H 0.96998 * 120.00251 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.47318 * 60.00186 * 16 14 13 37 37 H 1.08993 * 109.47745 * 300.00053 * 16 14 13 38 38 H 0.97000 * 120.00862 * 22.73517 * 19 17 16 39 39 H 0.97000 * 120.00948 * 359.97438 * 21 20 19 40 40 H 0.97002 * 119.99806 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.00150 * 0.02562 * 24 23 17 42 42 H 1.08000 * 120.00289 * 180.23259 * 25 24 23 43 43 H 1.08002 * 119.99433 * 179.72347 * 26 25 24 44 44 H 1.09007 * 109.46932 * 270.02378 * 28 27 26 45 45 H 1.08997 * 109.47121 * 30.02051 * 28 27 26 46 46 H 1.08994 * 109.47062 * 150.02625 * 28 27 26 47 47 H 1.08001 * 120.00075 * 0.02562 * 29 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4064 0.3365 -2.1728 9 14 6.0050 0.8811 -1.3817 10 1 6.5549 -0.3504 -0.7601 11 1 6.3831 0.9222 -2.8172 12 1 6.5571 2.0737 -0.6901 13 8 1.6560 2.0916 1.2407 14 6 0.4728 2.7254 1.2559 15 8 -0.2187 2.7377 0.2652 16 6 0.0075 3.4226 2.5083 17 6 -1.3607 4.0602 2.2587 18 1 -1.3024 4.7178 1.3914 19 7 -2.3508 3.0096 2.0094 20 6 -3.4803 3.2952 1.3316 21 7 -4.4398 2.3586 1.1959 22 8 -3.6335 4.3978 0.8426 23 6 -1.7705 4.8598 3.4686 24 6 -2.2067 4.2124 4.6097 25 6 -2.5780 4.9455 5.7210 26 6 -2.5232 6.3266 5.6879 27 6 -2.0921 6.9739 4.5453 28 6 -2.0328 8.4794 4.5091 29 6 -1.7157 6.2404 3.4355 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8294 -0.0614 -2.9497 36 1 0.7246 4.1970 2.7808 37 1 -0.0711 2.6987 3.3193 38 1 -2.1936 2.1085 2.3320 39 1 -4.3175 1.4788 1.5857 40 1 -5.2528 2.5642 0.7085 41 1 -2.2534 3.1336 4.6342 42 1 -2.9152 4.4396 6.6137 43 1 -2.8176 6.8996 6.5548 44 1 -2.9853 8.8720 4.1529 45 1 -1.8353 8.8594 5.5114 46 1 -1.2353 8.7955 3.8368 47 1 -1.3796 6.7462 2.5425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:15 Heat of formation + Delta-G solvation = -110.523069 kcal Electronic energy + Delta-G solvation = -29372.578607 eV Core-core repulsion = 25326.758144 eV Total energy + Delta-G solvation = -4045.820463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48545 -39.40238 -39.06448 -36.28923 -35.14623 -33.63929 -33.51709 -32.58542 -31.48492 -31.24331 -29.90519 -27.31158 -27.00169 -24.81217 -23.14806 -22.21660 -21.66387 -20.89199 -19.95716 -19.41422 -18.24495 -17.39358 -17.02238 -16.68628 -16.41707 -15.90737 -15.48813 -15.31104 -14.97436 -14.65777 -14.42213 -14.37685 -13.95571 -13.82828 -13.28679 -13.22528 -13.12101 -12.81032 -12.49066 -12.43294 -12.20990 -11.87111 -11.56253 -11.44052 -11.32761 -11.24416 -11.15254 -11.04102 -10.97570 -10.67055 -10.29394 -10.15496 -9.83844 -9.63814 -9.60917 -9.37426 -9.04101 -8.87112 -8.82569 -8.66192 -8.46997 -6.20113 -4.27260 1.21846 1.31781 2.94101 3.02590 3.23235 3.28887 3.32154 3.37762 3.52837 3.76039 4.31205 4.52036 4.69090 4.71963 4.80606 4.82042 5.03309 5.11902 5.17075 5.23988 5.36508 5.45467 5.48634 5.60660 5.66266 5.79017 5.87714 5.94728 6.05046 6.16236 6.22744 6.35707 6.40301 6.40690 6.49493 6.59952 6.77795 6.82074 6.91638 6.92821 6.97625 7.13068 7.23838 7.60165 7.71803 7.94189 8.03240 8.14397 8.62975 8.75605 8.88283 9.38274 10.86568 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.003033 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.474548 B = 9230.062723 C =10373.064034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.223 3.777 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.357 6.357 14 C 0.446 3.554 15 O -0.503 6.503 16 C -0.123 4.123 17 C 0.219 3.781 18 H 0.107 0.893 19 N -0.726 5.726 20 C 0.715 3.285 21 N -0.870 5.870 22 O -0.592 6.592 23 C -0.088 4.088 24 C -0.108 4.108 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.088 4.088 28 C -0.114 4.114 29 C -0.098 4.098 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.394 0.606 39 H 0.395 0.605 40 H 0.412 0.588 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.358 6.456 15.322 21.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.274 6.274 14 C 0.288 3.712 15 O -0.392 6.392 16 C -0.161 4.161 17 C 0.113 3.887 18 H 0.125 0.875 19 N -0.381 5.381 20 C 0.414 3.586 21 N -0.437 5.437 22 O -0.470 6.470 23 C -0.089 4.089 24 C -0.127 4.127 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.088 4.088 28 C -0.171 4.171 29 C -0.116 4.116 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.126 0.874 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.228 0.772 39 H 0.222 0.778 40 H 0.244 0.756 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.471 7.331 14.450 21.072 hybrid contribution 0.657 -1.055 -0.089 1.246 sum -12.814 6.276 14.361 20.244 Atomic orbital electron populations 1.21832 0.98443 0.98761 1.00611 1.22015 0.92573 0.99455 1.03302 1.20645 0.94952 0.88671 0.78716 0.93536 1.21050 0.89762 1.38942 1.06231 0.91366 1.24883 0.99221 0.94787 0.95059 1.69886 1.35375 1.37822 1.09481 0.86293 0.83937 0.78670 0.77357 1.20376 1.20985 1.19612 1.86471 1.34241 1.62539 1.44130 1.23070 0.81116 0.77516 0.89462 1.90671 1.55218 1.57865 1.35486 1.21667 0.96603 1.01716 0.96150 1.19380 0.84976 0.88601 0.95766 0.87537 1.44872 1.19951 1.12711 1.60562 1.15797 0.80125 0.84238 0.78462 1.42938 1.21822 1.15940 1.63034 1.90941 1.80191 1.22519 1.53339 1.20165 0.99657 0.93971 0.95129 1.20885 0.99404 0.99691 0.92671 1.21069 1.00407 0.94076 0.98248 1.21006 1.00726 0.94535 0.97729 1.19891 0.99024 0.96063 0.93828 1.20789 1.02496 0.91246 1.02546 1.20939 0.99570 0.93078 0.98046 0.95126 0.92853 0.94978 0.87407 0.94065 0.92397 0.86504 0.87819 0.77233 0.77803 0.75649 0.86389 0.86238 0.86371 0.91235 0.91680 0.91374 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.57 37.16 0.32 -2.55 16 2 C -0.14 -3.25 5.49 -26.73 -0.15 -3.40 16 3 C 0.22 5.75 2.25 -27.88 -0.06 5.69 16 4 H 0.05 1.35 7.16 -51.93 -0.37 0.98 16 5 C -0.52 -14.38 8.90 -34.44 -0.31 -14.69 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.86 11.29 55.43 0.63 -24.23 16 9 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 O -0.36 -8.04 9.81 -39.26 -0.38 -8.42 16 14 C 0.45 8.51 6.27 36.00 0.23 8.74 16 15 O -0.50 -10.91 12.50 -18.75 -0.23 -11.14 16 16 C -0.12 -1.64 5.27 -27.88 -0.15 -1.79 16 17 C 0.22 2.97 1.75 -69.08 -0.12 2.85 16 18 H 0.11 1.77 7.19 -51.93 -0.37 1.39 16 19 N -0.73 -9.35 3.69 -59.81 -0.22 -9.57 16 20 C 0.72 10.52 8.76 -86.92 -0.76 9.76 16 21 N -0.87 -8.82 8.88 27.63 0.25 -8.57 16 22 O -0.59 -11.35 16.85 5.29 0.09 -11.27 16 23 C -0.09 -1.07 4.87 -104.62 -0.51 -1.58 16 24 C -0.11 -1.14 9.28 -39.58 -0.37 -1.51 16 25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 27 C -0.09 -0.93 5.88 -104.62 -0.62 -1.55 16 28 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 29 C -0.10 -1.18 9.32 -39.59 -0.37 -1.55 16 30 H 0.03 0.58 6.06 -51.93 -0.31 0.26 16 31 H 0.05 1.19 7.80 -51.93 -0.40 0.78 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.11 2.85 5.95 -51.93 -0.31 2.54 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.39 4.19 8.60 -40.82 -0.35 3.84 16 39 H 0.39 2.81 8.85 -40.82 -0.36 2.45 16 40 H 0.41 3.71 8.93 -40.82 -0.36 3.35 16 41 H 0.12 1.05 7.88 -52.48 -0.41 0.63 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 46 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 47 H 0.12 1.46 8.00 -52.49 -0.42 1.04 16 LS Contribution 391.07 15.07 5.89 5.89 Total: -1.00 -34.40 391.07 -9.41 -43.82 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.03 Total: 11.32 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.38 Total: -3.67 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.65 Total: -42.38 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.53 Total: -30.83 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.40 -9.41 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.707 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds