Wall clock time and date at job start Tue Mar 31 2020 18:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.09002 * 109.47303 * 304.99646 * 3 2 1 5 5 C 1.50701 * 109.46854 * 185.00009 * 3 2 1 6 6 H 1.08002 * 119.99672 * 239.99896 * 5 3 2 7 7 C 1.37872 * 120.00471 * 59.99821 * 5 3 2 8 8 N 1.31515 * 119.99865 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00527 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47259 * 89.99977 * 9 7 5 11 11 H 1.48499 * 109.47693 * 210.00237 * 9 7 5 12 12 H 1.48510 * 109.47030 * 330.00241 * 9 7 5 13 13 O 1.45196 * 109.47128 * 65.00180 * 3 2 1 14 14 C 1.34229 * 116.99780 * 269.99847 * 13 3 2 15 15 O 1.20826 * 119.99896 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00099 * 180.02562 * 14 13 3 17 17 C 1.53006 * 109.47201 * 179.97438 * 16 14 13 18 18 H 1.08996 * 109.47151 * 305.00071 * 17 16 14 19 19 N 1.46499 * 109.46568 * 65.00304 * 17 16 14 20 20 C 1.34788 * 119.99970 * 202.73344 * 19 17 16 21 21 N 1.34764 * 119.99953 * 185.39034 * 20 19 17 22 22 O 1.21586 * 119.99726 * 5.38956 * 20 19 17 23 23 C 1.50702 * 109.47111 * 185.00055 * 17 16 14 24 24 C 1.38259 * 119.99819 * 285.21707 * 23 17 16 25 25 C 1.38211 * 119.99917 * 179.76793 * 24 23 17 26 26 C 1.38265 * 119.99639 * 0.50639 * 25 24 23 27 27 C 1.38214 * 119.99966 * 359.74634 * 26 25 24 28 28 C 1.50702 * 119.99753 * 179.97438 * 27 26 25 29 29 C 1.38207 * 119.99879 * 105.49202 * 23 17 16 30 30 H 1.09001 * 109.46973 * 300.00374 * 1 2 3 31 31 H 1.09002 * 109.46435 * 60.00418 * 1 2 3 32 32 H 1.08991 * 109.47034 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46973 * 239.99625 * 2 1 3 34 34 H 1.09002 * 109.46942 * 120.00157 * 2 1 3 35 35 H 0.96998 * 120.00251 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.47318 * 60.00186 * 16 14 13 37 37 H 1.08993 * 109.47745 * 300.00053 * 16 14 13 38 38 H 0.97000 * 120.00862 * 22.73517 * 19 17 16 39 39 H 0.97000 * 120.00948 * 359.97438 * 21 20 19 40 40 H 0.97002 * 119.99806 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.00150 * 0.02562 * 24 23 17 42 42 H 1.08000 * 120.00289 * 180.23259 * 25 24 23 43 43 H 1.08002 * 119.99433 * 179.72347 * 26 25 24 44 44 H 1.09007 * 109.46932 * 270.02378 * 28 27 26 45 45 H 1.08997 * 109.47121 * 30.02051 * 28 27 26 46 46 H 1.08994 * 109.47062 * 150.02625 * 28 27 26 47 47 H 1.08001 * 120.00075 * 0.02562 * 29 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4064 0.3365 -2.1728 9 14 6.0050 0.8811 -1.3817 10 1 6.5549 -0.3504 -0.7601 11 1 6.3831 0.9222 -2.8172 12 1 6.5571 2.0737 -0.6901 13 8 1.6560 2.0916 1.2407 14 6 0.4728 2.7254 1.2559 15 8 -0.2187 2.7377 0.2652 16 6 0.0075 3.4226 2.5083 17 6 -1.3607 4.0602 2.2587 18 1 -1.3024 4.7178 1.3914 19 7 -2.3508 3.0096 2.0094 20 6 -3.4803 3.2952 1.3316 21 7 -4.4398 2.3586 1.1959 22 8 -3.6335 4.3978 0.8426 23 6 -1.7705 4.8598 3.4686 24 6 -2.2067 4.2124 4.6097 25 6 -2.5780 4.9455 5.7210 26 6 -2.5232 6.3266 5.6879 27 6 -2.0921 6.9739 4.5453 28 6 -2.0328 8.4794 4.5091 29 6 -1.7157 6.2404 3.4355 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8294 -0.0614 -2.9497 36 1 0.7246 4.1970 2.7808 37 1 -0.0711 2.6987 3.3193 38 1 -2.1936 2.1085 2.3320 39 1 -4.3175 1.4788 1.5857 40 1 -5.2528 2.5642 0.7085 41 1 -2.2534 3.1336 4.6342 42 1 -2.9152 4.4396 6.6137 43 1 -2.8176 6.8996 6.5548 44 1 -2.9853 8.8720 4.1529 45 1 -1.8353 8.8594 5.5114 46 1 -1.2353 8.7955 3.8368 47 1 -1.3796 6.7462 2.5425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787084310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:14 Heat of formation + Delta-G solvation = -133.008052 kcal Electronic energy + Delta-G solvation = -29373.553629 eV Core-core repulsion = 25326.758144 eV Total energy + Delta-G solvation = -4046.795485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73283 -40.84601 -40.00176 -37.85037 -36.45575 -35.47460 -34.72747 -33.38183 -33.32499 -32.22643 -31.02196 -29.24192 -27.72647 -26.07726 -24.96692 -23.03423 -22.72740 -22.46855 -21.28018 -20.84727 -19.34527 -18.88403 -18.47795 -18.20612 -17.46733 -17.17326 -17.05745 -16.57528 -16.28630 -16.03839 -15.53167 -15.43074 -15.11053 -14.90298 -14.75964 -14.55450 -14.07756 -14.02870 -13.89324 -13.56109 -13.30840 -13.17898 -13.09187 -12.99398 -12.88516 -12.75796 -12.55228 -12.50950 -12.15376 -12.03969 -11.84417 -11.73641 -11.43094 -11.41443 -11.18804 -10.79819 -10.68585 -10.50542 -10.07153 -9.69892 -9.46263 -8.27075 -6.43626 0.40113 0.52317 1.40972 1.42915 1.44979 1.54228 1.96000 2.04018 2.25085 2.42177 2.87104 3.02708 3.60396 3.65794 3.74648 3.93239 4.07439 4.13954 4.22766 4.30503 4.40449 4.43581 4.51815 4.53522 4.56866 4.62999 4.76350 4.83319 4.86142 4.87661 5.00855 5.11344 5.15085 5.25100 5.32427 5.42950 5.43751 5.52888 5.59328 5.69292 5.70631 5.73164 5.90651 6.02488 6.05430 6.15211 6.19020 6.62516 7.05993 7.10274 7.29342 7.70099 8.79241 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014286 B = 0.003033 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.474548 B = 9230.062723 C =10373.064034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.129 4.129 3 C 0.227 3.773 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.978 3.022 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.266 1.266 13 O -0.364 6.364 14 C 0.442 3.558 15 O -0.532 6.532 16 C -0.107 4.107 17 C 0.226 3.774 18 H 0.066 0.934 19 N -0.718 5.718 20 C 0.706 3.294 21 N -0.849 5.849 22 O -0.644 6.644 23 C -0.099 4.099 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.098 4.098 28 C -0.114 4.114 29 C -0.123 4.123 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.047 0.953 35 H 0.269 0.731 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.407 0.593 39 H 0.412 0.588 40 H 0.419 0.581 41 H 0.137 0.863 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 5.761 18.256 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.167 4.167 3 C 0.174 3.826 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.802 3.198 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.191 1.191 13 O -0.281 6.281 14 C 0.286 3.714 15 O -0.422 6.422 16 C -0.145 4.145 17 C 0.120 3.880 18 H 0.085 0.915 19 N -0.374 5.374 20 C 0.404 3.596 21 N -0.418 5.418 22 O -0.526 6.526 23 C -0.100 4.100 24 C -0.130 4.130 25 C -0.137 4.137 26 C -0.142 4.142 27 C -0.098 4.098 28 C -0.170 4.170 29 C -0.141 4.141 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.243 0.757 39 H 0.243 0.757 40 H 0.251 0.749 41 H 0.155 0.845 42 H 0.165 0.835 43 H 0.161 0.839 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.084 0.916 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.698 6.588 17.418 23.118 hybrid contribution 0.636 -0.791 -0.990 1.418 sum -13.062 5.797 16.428 21.774 Atomic orbital electron populations 1.21666 0.95911 1.00469 1.00142 1.21841 0.94798 0.97876 1.02195 1.20288 0.94232 0.89361 0.78709 0.98039 1.21368 0.90858 1.39726 1.06794 0.91650 1.25781 1.04079 0.94008 0.94433 1.70018 1.37344 1.38048 1.09870 0.85250 0.77982 0.79140 0.77464 1.19104 1.20560 1.19059 1.86459 1.36193 1.63188 1.42264 1.24150 0.79631 0.76582 0.90993 1.90671 1.55706 1.58671 1.37173 1.21759 0.96557 1.02335 0.93808 1.19152 0.85245 0.88351 0.95254 0.91538 1.44761 1.19293 1.13227 1.60085 1.16089 0.80978 0.84158 0.78327 1.42733 1.20948 1.15917 1.62231 1.90906 1.81284 1.24923 1.55479 1.20002 1.01174 0.93783 0.95050 1.21108 0.98908 1.00779 0.92198 1.21438 0.99323 0.94175 0.98809 1.21371 0.99737 0.95066 0.98027 1.20175 0.98703 0.97219 0.93671 1.20827 1.02611 0.89913 1.03670 1.21042 1.01002 0.93588 0.98517 0.93523 0.95323 0.92056 0.90093 0.93377 0.92162 0.84822 0.84095 0.75693 0.75723 0.74863 0.84484 0.83469 0.83921 0.90990 0.89837 0.91550 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 8.57 71.98 0.62 -4.47 16 2 C -0.13 -6.27 5.49 30.60 0.17 -6.10 16 3 C 0.23 12.12 2.25 29.85 0.07 12.18 16 4 H 0.00 0.11 7.16 -2.39 -0.02 0.09 16 5 C -0.55 -30.94 8.90 25.60 0.23 -30.71 16 6 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 7 C 0.02 0.92 5.29 84.65 0.45 1.36 16 8 N -0.91 -52.40 11.29 21.45 0.24 -52.16 16 9 Si 0.98 42.83 29.54 68.60 2.03 44.85 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 O -0.36 -16.53 9.81 -51.41 -0.50 -17.04 16 14 C 0.44 16.97 6.27 71.23 0.45 17.42 16 15 O -0.53 -23.82 12.50 21.96 0.27 -23.55 16 16 C -0.11 -2.73 5.27 29.85 0.16 -2.58 16 17 C 0.23 6.15 1.75 44.25 0.08 6.23 16 18 H 0.07 2.36 7.19 -2.39 -0.02 2.34 16 19 N -0.72 -17.99 3.69 -461.40 -1.70 -19.70 16 20 C 0.71 20.74 8.76 179.05 1.57 22.31 16 21 N -0.85 -16.26 8.88 -184.76 -1.64 -17.90 16 22 O -0.64 -25.62 16.85 -3.99 -0.07 -25.68 16 23 C -0.10 -2.33 4.87 -19.87 -0.10 -2.43 16 24 C -0.11 -2.07 9.28 22.27 0.21 -1.87 16 25 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.12 -2.09 9.70 22.27 0.22 -1.87 16 27 C -0.10 -1.96 5.88 -19.87 -0.12 -2.08 16 28 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 29 C -0.12 -3.01 9.32 22.27 0.21 -2.80 16 30 H 0.05 1.71 6.06 -2.39 -0.01 1.70 16 31 H 0.03 1.28 7.80 -2.39 -0.02 1.26 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 4.39 5.95 -2.39 -0.01 4.37 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.13 3.05 8.14 -2.38 -0.02 3.03 16 37 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.41 7.84 8.60 -92.71 -0.80 7.04 16 39 H 0.41 4.99 8.85 -92.71 -0.82 4.17 16 40 H 0.42 7.14 8.93 -92.71 -0.83 6.32 16 41 H 0.14 1.93 7.88 -2.91 -0.02 1.91 16 42 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 44 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 46 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 47 H 0.11 2.87 8.00 -2.91 -0.02 2.84 16 Total: -1.00 -78.60 391.07 2.33 -76.27 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -1.43 Total: 33.03 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.13 Total: 1.86 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -3.10 Total: -89.75 kcal Atomic # 8 Polarization: -65.97 SS G_CDS: -0.30 Total: -66.26 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -78.60 2.33 -76.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.740 kcal (2) G-P(sol) polarization free energy of solvation -78.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds