Wall clock time and date at job start Tue Mar 31 2020 17:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.53002 * 109.46745 * 240.00325 * 2 1 3 5 5 O 1.45192 * 109.47293 * 120.00316 * 2 1 3 6 6 C 1.34640 * 117.00545 * 59.99853 * 5 2 1 7 7 O 1.21514 * 119.99355 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00483 * 180.02562 * 6 5 2 9 9 C 1.46493 * 120.00376 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47400 * 179.97438 * 9 8 6 11 11 C 1.38380 * 119.92539 * 269.97702 * 10 9 8 12 12 C 1.38344 * 120.29017 * 180.02562 * 11 10 9 13 13 C 1.37978 * 120.14704 * 359.69779 * 12 11 10 14 14 C 1.39565 * 119.84870 * 0.57678 * 13 12 11 15 15 C 1.47846 * 120.14297 * 179.72374 * 14 13 12 16 16 O 1.21553 * 120.00032 * 179.72296 * 15 14 13 17 17 N 1.34779 * 120.00003 * 359.72484 * 15 14 13 18 18 C 1.46499 * 119.99872 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.46992 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 C 1.37939 * 119.92864 * 89.99913 * 10 9 8 28 28 H 1.08999 * 109.46521 * 299.99699 * 1 2 3 29 29 H 1.08991 * 109.47006 * 59.99938 * 1 2 3 30 30 H 1.09006 * 109.46648 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47077 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47050 * 300.00354 * 3 2 1 33 33 H 1.09006 * 109.47034 * 60.00082 * 3 2 1 34 34 H 1.09000 * 109.46934 * 299.99562 * 4 2 1 35 35 H 1.08995 * 109.47109 * 60.00131 * 4 2 1 36 36 H 1.09005 * 109.46869 * 179.97438 * 4 2 1 37 37 H 0.97007 * 119.99898 * 359.97438 * 8 6 5 38 38 H 1.08996 * 109.47076 * 59.99739 * 9 8 6 39 39 H 1.09006 * 109.47073 * 300.00092 * 9 8 6 40 40 H 1.07994 * 119.85736 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.92489 * 179.97438 * 12 11 10 42 42 H 1.07993 * 120.07732 * 180.27654 * 13 12 11 43 43 H 0.97000 * 119.99708 * 359.97438 * 17 15 14 44 44 H 1.09002 * 109.47391 * 59.99686 * 18 17 15 45 45 H 1.09001 * 109.46813 * 299.99742 * 18 17 15 46 46 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 47 47 H 1.07995 * 120.06939 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6524 -1.9724 1.3383 7 8 0.9510 -2.5094 0.5039 8 7 2.0674 -2.6655 2.4170 9 6 1.6743 -4.0669 2.5830 10 6 2.2653 -4.6066 3.8599 11 6 3.5153 -5.2000 3.8452 12 6 4.0649 -5.6985 5.0128 13 6 3.3715 -5.6012 6.2017 14 6 2.1078 -5.0090 6.2224 15 6 1.3565 -4.9068 7.4916 16 8 0.2583 -4.3860 7.5076 17 7 1.8893 -5.3910 8.6310 18 6 1.1446 -5.2902 9.8885 19 6 1.9545 -5.9021 11.0024 20 1 2.9269 -6.3235 10.7945 21 6 1.4545 -5.9230 12.2872 22 7 2.1616 -6.4565 13.2593 23 14 -0.2271 -5.1935 12.6469 24 1 -1.2657 -6.2434 12.4913 25 1 -0.2537 -4.6733 14.0375 26 1 -0.4987 -4.0840 11.6980 27 6 1.5589 -4.5084 5.0406 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2496 37 1 2.6271 -2.2366 3.0833 38 1 2.0415 -4.6497 1.7383 39 1 0.5874 -4.1366 2.6274 40 1 4.0640 -5.2751 2.9180 41 1 5.0407 -6.1609 4.9945 42 1 3.8034 -5.9867 7.1133 43 1 2.7655 -5.8069 8.6182 44 1 0.1978 -5.8220 9.7938 45 1 0.9513 -4.2413 10.1132 46 1 1.8097 -6.4715 14.1631 47 1 0.5832 -4.0458 5.0505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787629408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:20 Heat of formation + Delta-G solvation = -101.048232 kcal Electronic energy + Delta-G solvation = -27568.509798 eV Core-core repulsion = 23523.100194 eV Total energy + Delta-G solvation = -4045.409603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.04025 -40.05247 -38.44170 -37.51658 -35.23086 -34.47416 -34.25906 -32.52956 -31.53782 -31.20418 -28.06044 -27.75670 -27.70519 -26.53134 -24.04289 -22.74127 -21.85249 -21.72824 -20.44168 -19.84085 -18.61577 -17.74610 -16.92258 -16.67996 -16.55234 -15.89477 -15.79483 -15.54178 -14.98673 -14.89907 -14.64605 -14.56026 -14.42090 -13.94846 -13.77498 -13.40418 -13.24013 -12.96621 -12.82418 -12.75156 -12.47436 -12.37553 -12.24646 -12.23321 -12.09868 -11.81482 -11.71772 -11.63891 -11.25654 -11.06659 -10.81168 -10.67464 -10.36110 -10.01448 -9.55614 -9.49922 -9.42290 -9.12672 -9.08065 -8.82331 -8.23280 -6.25606 -4.28462 0.75250 1.06351 1.99645 2.59075 3.06636 3.24202 3.31052 3.39107 3.79549 3.85324 4.02657 4.29731 4.31005 4.36918 4.41591 4.55712 4.64445 4.79205 5.00549 5.08573 5.09796 5.11857 5.13783 5.19373 5.21070 5.34134 5.38584 5.45989 5.46482 5.51599 5.63961 5.66190 5.80456 5.84655 5.95154 6.08135 6.19702 6.22165 6.25992 6.27765 6.66419 6.76598 7.00698 7.11400 7.14538 7.31848 8.05677 8.11582 8.41949 8.68058 8.80644 9.33880 10.86170 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.001951 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.220572 B =14349.880305 C =15221.916269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.570 6.570 8 N -0.707 5.707 9 C 0.183 3.817 10 C -0.127 4.127 11 C -0.080 4.080 12 C -0.128 4.128 13 C -0.075 4.075 14 C -0.123 4.123 15 C 0.540 3.460 16 O -0.553 6.553 17 N -0.697 5.697 18 C 0.219 3.781 19 C -0.546 4.546 20 H 0.080 0.920 21 C 0.078 3.922 22 N -0.891 5.891 23 Si 0.877 3.123 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.261 1.261 27 C -0.042 4.042 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.408 0.592 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.396 0.604 44 H 0.023 0.977 45 H 0.028 0.972 46 H 0.268 0.732 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 9.701 -28.114 30.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.404 3.596 7 O -0.459 6.459 8 N -0.366 5.366 9 C 0.062 3.938 10 C -0.128 4.128 11 C -0.099 4.099 12 C -0.146 4.146 13 C -0.094 4.094 14 C -0.126 4.126 15 C 0.326 3.674 16 O -0.433 6.433 17 N -0.345 5.345 18 C 0.097 3.903 19 C -0.584 4.584 20 H 0.098 0.902 21 C -0.126 4.126 22 N -0.528 5.528 23 Si 0.703 3.297 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.185 1.185 27 C -0.061 4.061 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.244 0.756 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.231 0.769 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.061 9.822 -28.311 30.123 hybrid contribution -0.101 0.223 0.719 0.760 sum 2.960 10.045 -27.592 29.513 Atomic orbital electron populations 1.22525 0.93913 1.05144 1.02563 1.22079 0.94448 0.91516 0.82025 1.21868 1.02252 0.92526 1.03202 1.22516 1.01512 1.03521 0.96476 1.86313 1.71522 1.23587 1.46516 1.18074 0.78833 0.80527 0.82198 1.90904 1.41088 1.70509 1.43406 1.44851 1.55667 1.12407 1.23701 1.20135 1.00184 0.78862 0.94639 1.19677 0.95920 1.02862 0.94334 1.21224 0.94156 0.95970 0.98546 1.21110 1.00498 1.00814 0.92188 1.21546 0.93276 0.95713 0.98819 1.20225 0.95625 1.02162 0.94599 1.18264 0.85906 0.79511 0.83769 1.90732 1.20678 1.45340 1.86543 1.46150 1.21777 1.58166 1.08409 1.19557 0.92680 0.97416 0.80612 1.21064 1.05327 1.40454 0.91513 0.90221 1.24790 0.97662 0.94339 0.95780 1.69877 1.37898 1.43921 1.01079 0.86815 0.84255 0.80534 0.78091 1.19788 1.20844 1.18485 1.21211 0.99684 0.94937 0.90284 0.92066 0.91144 0.89331 0.91463 0.90129 0.91372 0.89360 0.91151 0.92199 0.75645 0.90089 0.89985 0.85534 0.85112 0.84925 0.76891 0.95878 0.95428 0.92201 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 2 C 0.14 1.15 1.13 -90.61 -0.10 1.04 16 3 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 4 C -0.18 -1.44 8.37 37.16 0.31 -1.13 16 5 O -0.36 -3.77 9.94 -40.32 -0.40 -4.17 16 6 C 0.65 7.23 8.06 54.05 0.44 7.67 16 7 O -0.57 -7.40 11.88 -19.28 -0.23 -7.63 16 8 N -0.71 -6.61 5.55 -66.47 -0.37 -6.97 16 9 C 0.18 1.66 5.79 -5.20 -0.03 1.63 16 10 C -0.13 -1.24 5.24 -104.68 -0.55 -1.79 16 11 C -0.08 -0.69 9.69 -39.49 -0.38 -1.07 16 12 C -0.13 -1.17 10.03 -39.64 -0.40 -1.57 16 13 C -0.07 -0.87 9.54 -39.18 -0.37 -1.24 16 14 C -0.12 -1.78 5.87 -104.97 -0.62 -2.40 16 15 C 0.54 10.35 7.77 -12.33 -0.10 10.26 16 16 O -0.55 -12.53 16.35 5.32 0.09 -12.44 16 17 N -0.70 -13.97 5.50 -62.43 -0.34 -14.31 16 18 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 19 C -0.55 -14.73 9.83 -34.44 -0.34 -15.07 16 20 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 21 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 22 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 23 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 27 C -0.04 -0.53 9.24 -39.19 -0.36 -0.89 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.95 5.88 -51.93 -0.31 0.64 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.89 5.88 -51.93 -0.31 0.58 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.41 3.36 8.57 -40.82 -0.35 3.01 16 38 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.13 1.42 6.40 -52.49 -0.34 1.08 16 43 H 0.40 6.89 6.36 -40.82 -0.26 6.63 16 44 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 45 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.14 1.85 7.65 -52.49 -0.40 1.44 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -33.24 390.11 -8.20 -41.44 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.95 Total: 5.92 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -1.98 Total: 1.06 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.06 Total: -46.61 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.54 Total: -24.23 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.24 -8.20 -41.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.605 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds