Wall clock time and date at job start Tue Mar 31 2020 17:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.53002 * 109.46745 * 240.00325 * 2 1 3 5 5 O 1.45192 * 109.47293 * 120.00316 * 2 1 3 6 6 C 1.34640 * 117.00545 * 59.99853 * 5 2 1 7 7 O 1.21514 * 119.99355 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00483 * 180.02562 * 6 5 2 9 9 C 1.46493 * 120.00376 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47400 * 179.97438 * 9 8 6 11 11 C 1.38380 * 119.92539 * 269.97702 * 10 9 8 12 12 C 1.38344 * 120.29017 * 180.02562 * 11 10 9 13 13 C 1.37978 * 120.14704 * 359.69779 * 12 11 10 14 14 C 1.39565 * 119.84870 * 0.57678 * 13 12 11 15 15 C 1.47846 * 120.14297 * 179.72374 * 14 13 12 16 16 O 1.21553 * 120.00032 * 179.72296 * 15 14 13 17 17 N 1.34779 * 120.00003 * 359.72484 * 15 14 13 18 18 C 1.46499 * 119.99872 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.46992 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 C 1.37939 * 119.92864 * 89.99913 * 10 9 8 28 28 H 1.08999 * 109.46521 * 299.99699 * 1 2 3 29 29 H 1.08991 * 109.47006 * 59.99938 * 1 2 3 30 30 H 1.09006 * 109.46648 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47077 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.47050 * 300.00354 * 3 2 1 33 33 H 1.09006 * 109.47034 * 60.00082 * 3 2 1 34 34 H 1.09000 * 109.46934 * 299.99562 * 4 2 1 35 35 H 1.08995 * 109.47109 * 60.00131 * 4 2 1 36 36 H 1.09005 * 109.46869 * 179.97438 * 4 2 1 37 37 H 0.97007 * 119.99898 * 359.97438 * 8 6 5 38 38 H 1.08996 * 109.47076 * 59.99739 * 9 8 6 39 39 H 1.09006 * 109.47073 * 300.00092 * 9 8 6 40 40 H 1.07994 * 119.85736 * 359.97438 * 11 10 9 41 41 H 1.07998 * 119.92489 * 179.97438 * 12 11 10 42 42 H 1.07993 * 120.07732 * 180.27654 * 13 12 11 43 43 H 0.97000 * 119.99708 * 359.97438 * 17 15 14 44 44 H 1.09002 * 109.47391 * 59.99686 * 18 17 15 45 45 H 1.09001 * 109.46813 * 299.99742 * 18 17 15 46 46 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 47 47 H 1.07995 * 120.06939 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6524 -1.9724 1.3383 7 8 0.9510 -2.5094 0.5039 8 7 2.0674 -2.6655 2.4170 9 6 1.6743 -4.0669 2.5830 10 6 2.2653 -4.6066 3.8599 11 6 3.5153 -5.2000 3.8452 12 6 4.0649 -5.6985 5.0128 13 6 3.3715 -5.6012 6.2017 14 6 2.1078 -5.0090 6.2224 15 6 1.3565 -4.9068 7.4916 16 8 0.2583 -4.3860 7.5076 17 7 1.8893 -5.3910 8.6310 18 6 1.1446 -5.2902 9.8885 19 6 1.9545 -5.9021 11.0024 20 1 2.9269 -6.3235 10.7945 21 6 1.4545 -5.9230 12.2872 22 7 2.1616 -6.4565 13.2593 23 14 -0.2271 -5.1935 12.6469 24 1 -1.2657 -6.2434 12.4913 25 1 -0.2537 -4.6733 14.0375 26 1 -0.4987 -4.0840 11.6980 27 6 1.5589 -4.5084 5.0406 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7208 -1.2496 37 1 2.6271 -2.2366 3.0833 38 1 2.0415 -4.6497 1.7383 39 1 0.5874 -4.1366 2.6274 40 1 4.0640 -5.2751 2.9180 41 1 5.0407 -6.1609 4.9945 42 1 3.8034 -5.9867 7.1133 43 1 2.7655 -5.8069 8.6182 44 1 0.1978 -5.8220 9.7938 45 1 0.9513 -4.2413 10.1132 46 1 1.8097 -6.4715 14.1631 47 1 0.5832 -4.0458 5.0505 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787629408.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:20 Heat of formation + Delta-G solvation = -124.328614 kcal Electronic energy + Delta-G solvation = -27569.519311 eV Core-core repulsion = 23523.100194 eV Total energy + Delta-G solvation = -4046.419116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.83172 -41.21990 -39.65859 -38.33524 -36.29968 -36.06940 -34.97384 -34.47689 -32.57268 -32.13179 -29.90570 -28.34144 -28.27942 -27.37237 -25.43345 -23.66949 -23.35219 -22.66447 -21.43450 -21.05994 -19.60106 -19.05739 -18.30801 -17.63933 -17.42282 -17.16076 -16.98713 -16.38975 -16.27133 -16.15963 -15.93269 -15.67015 -15.33056 -15.10579 -14.73482 -14.47805 -14.44217 -14.29098 -14.00804 -13.88884 -13.39511 -13.32460 -13.10066 -13.06181 -12.89071 -12.84692 -12.72976 -12.66969 -12.44161 -12.32152 -12.10808 -11.94727 -11.67965 -11.37521 -11.15685 -11.02051 -10.93965 -10.26934 -10.18186 -9.97408 -9.84514 -8.41893 -6.49142 -0.19616 0.18795 1.24899 1.31494 1.33960 1.46217 1.75535 1.86796 2.26069 2.33305 2.80521 2.93783 3.26744 3.49559 3.70476 3.76958 3.81895 3.88458 3.96796 4.10351 4.23186 4.27173 4.47232 4.56513 4.62524 4.64032 4.72853 4.78743 4.79347 4.84372 4.87718 4.89753 4.97199 4.97752 5.06299 5.21056 5.21848 5.30127 5.32577 5.36547 5.36976 5.41738 5.44081 5.57841 5.85472 6.05762 6.37025 6.50442 6.74060 7.11460 7.28747 7.31770 8.72534 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.001951 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.220572 B =14349.880305 C =15221.916269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.700 5.700 9 C 0.187 3.813 10 C -0.117 4.117 11 C -0.060 4.060 12 C -0.118 4.118 13 C -0.076 4.076 14 C -0.149 4.149 15 C 0.539 3.461 16 O -0.596 6.596 17 N -0.698 5.698 18 C 0.230 3.770 19 C -0.548 4.548 20 H 0.062 0.938 21 C 0.029 3.971 22 N -0.928 5.928 23 Si 0.936 3.064 24 H -0.265 1.265 25 H -0.272 1.272 26 H -0.262 1.262 27 C -0.050 4.050 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.414 0.586 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.138 0.862 43 H 0.409 0.591 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.273 0.727 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 10.263 -30.478 32.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.088 3.912 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.285 6.285 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.360 5.360 9 C 0.066 3.934 10 C -0.117 4.117 11 C -0.078 4.078 12 C -0.136 4.136 13 C -0.095 4.095 14 C -0.152 4.152 15 C 0.328 3.672 16 O -0.479 6.479 17 N -0.347 5.347 18 C 0.107 3.893 19 C -0.586 4.586 20 H 0.080 0.920 21 C -0.172 4.172 22 N -0.566 5.566 23 Si 0.759 3.241 24 H -0.190 1.190 25 H -0.197 1.197 26 H -0.186 1.186 27 C -0.070 4.070 28 H 0.076 0.924 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.251 0.749 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.181 0.819 41 H 0.184 0.816 42 H 0.156 0.844 43 H 0.246 0.754 44 H 0.031 0.969 45 H 0.032 0.968 46 H 0.082 0.918 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.413 10.380 -30.683 32.691 hybrid contribution -0.423 0.042 1.325 1.391 sum 3.990 10.421 -29.358 31.407 Atomic orbital electron populations 1.22488 0.94236 1.03679 1.03437 1.22417 0.94412 0.92728 0.81659 1.21893 1.02519 0.90799 1.04185 1.22459 1.01728 1.02240 0.97068 1.86324 1.71559 1.23145 1.47516 1.18233 0.78681 0.80815 0.82282 1.90899 1.42063 1.71017 1.44296 1.44821 1.55338 1.12465 1.23349 1.20113 0.99681 0.78909 0.94713 1.19657 0.96254 1.02603 0.93236 1.21651 0.93081 0.93235 0.99834 1.21480 1.01402 0.99713 0.90964 1.21679 0.92179 0.95170 1.00429 1.19852 0.96994 1.05898 0.92492 1.18981 0.85548 0.77833 0.84816 1.90693 1.22741 1.47129 1.87334 1.45960 1.22194 1.58966 1.07578 1.19163 0.92318 0.96032 0.81810 1.21252 1.04894 1.39976 0.92442 0.91981 1.25567 1.01138 0.94764 0.95752 1.69970 1.39688 1.45314 1.01671 0.85886 0.80116 0.79857 0.78221 1.18984 1.19675 1.18616 1.21133 0.99467 0.95383 0.90989 0.92414 0.89058 0.91865 0.91038 0.87953 0.91591 0.91744 0.89193 0.91731 0.74930 0.88494 0.91095 0.81934 0.81647 0.84405 0.75430 0.96890 0.96751 0.91778 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 8.37 71.99 0.60 -2.34 16 2 C 0.12 1.94 1.13 -10.79 -0.01 1.92 16 3 C -0.14 -1.36 8.85 71.98 0.64 -0.73 16 4 C -0.18 -2.56 8.37 71.98 0.60 -1.96 16 5 O -0.37 -7.35 9.94 -55.49 -0.55 -7.90 16 6 C 0.65 13.97 8.06 129.79 1.05 15.01 16 7 O -0.59 -15.30 11.88 19.80 0.24 -15.06 16 8 N -0.70 -12.21 5.55 -594.63 -3.30 -15.51 16 9 C 0.19 3.09 5.79 85.63 0.50 3.59 16 10 C -0.12 -2.04 5.24 -19.90 -0.10 -2.14 16 11 C -0.06 -0.77 9.69 22.33 0.22 -0.55 16 12 C -0.12 -1.69 10.03 22.23 0.22 -1.46 16 13 C -0.08 -1.62 9.54 22.53 0.21 -1.41 16 14 C -0.15 -4.29 5.87 -20.09 -0.12 -4.41 16 15 C 0.54 21.25 7.77 86.79 0.67 21.93 16 16 O -0.60 -28.11 16.35 -3.88 -0.06 -28.17 16 17 N -0.70 -28.56 5.50 -469.70 -2.58 -31.14 16 18 C 0.23 11.43 4.50 85.63 0.38 11.82 16 19 C -0.55 -30.14 9.83 25.60 0.25 -29.89 16 20 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 21 C 0.03 1.61 5.47 84.66 0.46 2.07 16 22 N -0.93 -54.96 13.96 21.45 0.30 -54.66 16 23 Si 0.94 44.07 27.47 68.60 1.88 45.95 16 24 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.26 -12.30 6.54 99.48 0.65 -11.65 16 27 C -0.05 -1.26 9.24 22.53 0.21 -1.05 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.37 5.88 -2.38 -0.01 1.36 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.06 1.27 5.88 -2.39 -0.01 1.25 16 35 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.41 6.19 8.57 -92.70 -0.79 5.40 16 38 H 0.10 1.34 8.08 -2.39 -0.02 1.33 16 39 H 0.07 1.36 8.08 -2.38 -0.02 1.34 16 40 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 41 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 42 H 0.14 2.74 6.40 -2.91 -0.02 2.72 16 43 H 0.41 14.38 6.36 -92.71 -0.59 13.79 16 44 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 45 H 0.01 0.76 7.20 -2.39 -0.02 0.74 16 46 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 47 H 0.12 3.38 7.65 -2.91 -0.02 3.36 16 Total: -1.00 -74.30 390.11 1.27 -73.04 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: -0.44 Total: 23.07 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 5.79 Total: 10.40 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -5.59 Total: -101.32 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -0.38 Total: -51.13 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -74.30 1.27 -73.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787629408.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.292 kcal (2) G-P(sol) polarization free energy of solvation -74.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds