Wall clock time and date at job start Tue Mar 31 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 H 1.08997 * 109.47040 * 55.00140 * 3 2 1 5 5 C 1.52995 * 109.47141 * 294.99933 * 3 2 1 6 6 C 1.50697 * 109.46562 * 174.99617 * 3 2 1 7 7 C 1.38282 * 119.92702 * 59.73063 * 6 3 2 8 8 C 1.38118 * 120.06589 * 179.76348 * 7 6 3 9 9 C 1.38871 * 119.93047 * 0.48044 * 8 7 6 10 10 N 1.39923 * 120.06964 * 179.79057 * 9 8 7 11 11 C 1.34778 * 120.00004 * 144.53183 * 10 9 8 12 12 O 1.21284 * 120.00033 * 4.54470 * 11 10 9 13 13 C 1.50702 * 119.99780 * 184.55492 * 11 10 9 14 14 N 1.46503 * 109.46438 * 185.14099 * 13 11 10 15 15 C 1.36934 * 119.99953 * 85.22150 * 14 13 11 16 16 H 1.07999 * 119.99834 * 345.58565 * 15 14 13 17 17 C 1.38810 * 120.00042 * 165.59630 * 15 14 13 18 18 N 1.31615 * 120.00294 * 0.52345 * 17 15 14 19 19 Si 1.86802 * 120.00212 * 180.52526 * 17 15 14 20 20 H 1.48503 * 109.47428 * 89.99463 * 19 17 15 21 21 H 1.48500 * 109.47587 * 210.00032 * 19 17 15 22 22 H 1.48507 * 109.47091 * 329.99794 * 19 17 15 23 23 C 1.46504 * 119.99959 * 265.20944 * 14 13 11 24 24 C 1.50702 * 109.47128 * 264.54400 * 23 14 13 25 25 O 1.20823 * 119.99953 * 5.29160 * 24 23 14 26 26 O 1.34224 * 119.99662 * 185.29400 * 24 23 14 27 27 C 1.38873 * 119.85591 * 359.77138 * 9 8 7 28 28 C 1.38105 * 119.93494 * 359.97438 * 27 9 8 29 29 H 1.09001 * 109.47040 * 60.00210 * 1 2 3 30 30 H 1.09000 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47764 * 300.00227 * 1 2 3 32 32 H 1.08996 * 109.46859 * 239.99805 * 2 1 3 33 33 H 1.08999 * 109.46832 * 120.00295 * 2 1 3 34 34 H 1.08997 * 109.47781 * 60.00000 * 5 3 2 35 35 H 1.09004 * 109.47207 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47380 * 299.99717 * 5 3 2 37 37 H 1.07999 * 119.96936 * 359.97438 * 7 6 3 38 38 H 1.08007 * 120.03179 * 180.25099 * 8 7 6 39 39 H 0.97001 * 120.00188 * 324.52232 * 10 9 8 40 40 H 1.08997 * 109.46837 * 305.13843 * 13 11 10 41 41 H 1.08998 * 109.47559 * 65.14456 * 13 11 10 42 42 H 0.96997 * 120.00488 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.46754 * 24.54587 * 23 14 13 44 44 H 1.09001 * 109.46623 * 144.54056 * 23 14 13 45 45 H 0.96704 * 117.00242 * 179.97438 * 26 24 23 46 46 H 1.08006 * 120.03081 * 179.97438 * 27 9 8 47 47 H 1.07994 * 119.96612 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 6 4.3138 0.8111 -0.8329 8 6 5.6907 0.8151 -0.7247 9 6 6.2994 1.4473 0.3516 10 7 7.6939 1.4493 0.4663 11 6 8.3267 2.5259 0.9733 12 8 7.6842 3.4591 1.4060 13 6 9.8328 2.5702 1.0022 14 7 10.2723 3.7777 1.7059 15 6 10.3813 3.7731 3.0709 16 1 9.9309 2.9776 3.6459 17 6 11.0706 4.7911 3.7155 18 7 11.6105 5.7662 3.0155 19 14 11.2319 4.7772 5.5765 20 1 12.4613 4.0384 5.9613 21 1 11.3160 6.1729 6.0766 22 1 10.0465 4.1089 6.1711 23 6 10.5953 4.9899 0.9493 24 6 12.0800 5.0435 0.6965 25 8 12.7821 4.1155 1.0215 26 8 12.6224 6.1224 0.1103 27 6 5.5210 2.0777 1.3135 28 6 4.1449 2.0747 1.1969 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.5490 2.1252 -1.3970 35 1 1.9989 3.1541 -1.3075 36 1 2.0699 1.5876 -2.1492 37 1 3.8397 0.3159 -1.6674 38 1 6.2932 0.3239 -1.4745 39 1 8.2052 0.6759 0.1812 40 1 10.2123 1.6894 1.5200 41 1 10.2156 2.5849 -0.0183 42 1 12.0925 6.4773 3.4659 43 1 10.0649 4.9760 -0.0028 44 1 10.2921 5.8668 1.5213 45 1 13.5790 6.1111 -0.0307 46 1 5.9914 2.5698 2.1520 47 1 3.5391 2.5651 1.9444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000828765106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:26 Heat of formation + Delta-G solvation = -80.097955 kcal Electronic energy + Delta-G solvation = -28560.230559 eV Core-core repulsion = 24515.729428 eV Total energy + Delta-G solvation = -4044.501131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.22645 -38.86212 -38.46122 -36.38891 -35.42339 -34.25032 -33.95040 -31.53780 -30.82657 -30.53324 -28.72052 -27.68221 -26.43671 -24.74155 -23.22631 -22.69556 -21.76476 -20.51426 -19.97385 -19.54868 -17.65517 -16.89771 -16.68306 -16.43193 -15.93023 -15.41336 -15.24805 -14.96657 -14.78031 -14.33366 -14.07797 -14.00427 -13.93067 -13.50290 -13.37488 -13.12940 -13.04289 -12.95567 -12.77835 -12.24222 -12.19897 -11.87271 -11.67640 -11.43347 -11.27506 -11.07622 -10.98435 -10.94472 -10.79108 -10.65610 -10.54580 -10.18679 -10.08046 -9.97298 -9.87198 -9.45663 -9.06355 -8.77350 -8.60665 -7.80778 -7.18791 -5.91880 -3.34730 1.41305 1.54566 3.18357 3.33040 3.38420 3.42147 3.44500 3.92979 4.00602 4.33542 4.55367 4.62417 4.63939 4.85022 4.98391 5.09915 5.18859 5.23631 5.29239 5.30557 5.32176 5.42053 5.49340 5.54952 5.65455 5.71615 5.73391 5.80743 5.85498 5.89826 5.94289 6.11153 6.13198 6.14687 6.16772 6.42172 6.44949 6.56017 6.73246 6.78054 7.01622 7.25144 7.28449 7.58317 7.76622 7.97316 8.12936 8.71848 8.97622 9.52585 9.63089 9.99089 11.14834 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.002467 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.758728 B =11346.725916 C =12130.763833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.049 4.049 4 H 0.075 0.925 5 C -0.145 4.145 6 C -0.104 4.104 7 C -0.099 4.099 8 C -0.152 4.152 9 C 0.154 3.846 10 N -0.688 5.688 11 C 0.477 3.523 12 O -0.498 6.498 13 C 0.135 3.865 14 N -0.550 5.550 15 C -0.230 4.230 16 H 0.079 0.921 17 C -0.002 4.002 18 N -0.921 5.921 19 Si 0.926 3.074 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.196 3.804 24 C 0.491 3.509 25 O -0.542 6.542 26 O -0.539 6.539 27 C -0.119 4.119 28 C -0.099 4.099 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.405 0.595 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.260 0.740 43 H 0.042 0.958 44 H 0.129 0.871 45 H 0.378 0.622 46 H 0.140 0.860 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.846 -10.194 -9.752 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.067 4.067 4 H 0.093 0.907 5 C -0.202 4.202 6 C -0.105 4.105 7 C -0.117 4.117 8 C -0.173 4.173 9 C 0.059 3.941 10 N -0.336 5.336 11 C 0.262 3.738 12 O -0.369 6.369 13 C 0.003 3.997 14 N -0.268 5.268 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.756 3.244 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.067 3.933 24 C 0.333 3.667 25 O -0.430 6.430 26 O -0.348 6.348 27 C -0.140 4.140 28 C -0.118 4.118 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.240 0.760 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.147 0.853 45 H 0.233 0.767 46 H 0.158 0.842 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -16.361 -9.547 -9.136 21.031 hybrid contribution 1.234 -0.342 0.802 1.511 sum -15.128 -9.889 -8.334 19.902 Atomic orbital electron populations 1.21842 0.95961 1.01464 1.01891 1.21588 0.95501 0.95973 1.02228 1.20112 0.91268 0.96436 0.98882 0.90681 1.21894 1.00899 1.00720 0.96688 1.19738 0.94960 0.99870 0.95898 1.20647 0.92750 0.99645 0.98684 1.20878 0.95061 1.04220 0.97144 1.17901 0.83649 0.98563 0.93962 1.44068 1.04499 1.19797 1.65219 1.23475 0.93513 0.80895 0.75897 1.90653 1.67646 1.36039 1.42567 1.20698 0.87740 0.92841 0.98457 1.43430 1.73209 1.06734 1.03430 1.19302 1.27078 1.08561 0.80924 0.90277 1.24837 0.98279 0.97325 0.99218 1.69456 1.40326 1.13455 1.33808 0.85893 0.77869 0.76978 0.83612 1.21414 1.21477 1.20458 1.20377 0.85454 0.93101 0.94321 1.24782 0.93982 0.77422 0.70532 1.90477 1.63593 1.39505 1.49415 1.84606 1.27851 1.47001 1.75360 1.21375 0.93192 1.00267 0.99125 1.20952 0.94257 0.98947 0.97616 0.92499 0.92917 0.92776 0.91911 0.91887 0.92430 0.92533 0.92596 0.86345 0.86103 0.75957 0.89937 0.90333 0.92877 0.93976 0.85331 0.76701 0.84197 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.67 37.16 0.36 -0.65 16 2 C -0.12 -0.90 5.14 -26.73 -0.14 -1.04 16 3 C -0.05 -0.43 2.56 -91.77 -0.23 -0.67 16 4 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 5 C -0.14 -1.18 8.76 37.16 0.33 -0.86 16 6 C -0.10 -1.18 4.78 -104.59 -0.50 -1.68 16 7 C -0.10 -1.08 8.75 -39.61 -0.35 -1.43 16 8 C -0.15 -1.81 9.97 -39.39 -0.39 -2.20 16 9 C 0.15 2.24 6.29 -83.69 -0.53 1.71 16 10 N -0.69 -9.76 5.34 -9.86 -0.05 -9.81 16 11 C 0.48 8.76 7.71 -10.98 -0.08 8.68 16 12 O -0.50 -11.19 13.89 5.55 0.08 -11.11 16 13 C 0.13 2.57 6.13 -5.19 -0.03 2.54 16 14 N -0.55 -13.40 1.56 -175.98 -0.27 -13.68 16 15 C -0.23 -6.19 9.70 -15.06 -0.15 -6.34 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C 0.00 -0.05 5.36 -17.43 -0.09 -0.15 16 18 N -0.92 -25.89 7.97 55.49 0.44 -25.45 16 19 Si 0.93 22.24 29.55 -169.99 -5.02 17.21 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.20 4.72 5.57 -5.19 -0.03 4.70 16 24 C 0.49 12.01 5.93 36.01 0.21 12.22 16 25 O -0.54 -14.74 17.06 -18.75 -0.32 -15.06 16 26 O -0.54 -11.37 13.42 -39.24 -0.53 -11.89 16 27 C -0.12 -1.88 8.69 -39.40 -0.34 -2.22 16 28 C -0.10 -1.31 9.66 -39.61 -0.38 -1.70 16 29 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.47 7.55 -51.93 -0.39 0.08 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.40 6.56 -51.93 -0.34 0.05 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.44 7.40 -51.93 -0.38 0.05 16 37 H 0.12 1.04 7.15 -52.49 -0.38 0.66 16 38 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.41 4.26 8.82 -40.82 -0.36 3.90 16 40 H 0.08 1.46 8.08 -51.93 -0.42 1.04 16 41 H 0.08 1.32 8.04 -51.93 -0.42 0.90 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.04 0.90 8.03 -51.93 -0.42 0.49 16 44 H 0.13 3.45 6.27 -51.93 -0.33 3.12 16 45 H 0.38 6.37 9.10 45.56 0.41 6.78 16 46 H 0.14 2.57 6.26 -52.48 -0.33 2.24 16 47 H 0.12 1.41 7.94 -52.49 -0.42 0.99 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -34.07 387.19 -8.36 -42.43 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.17 Total: 10.63 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: -2.35 Total: 10.91 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.12 Total: -48.94 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -0.77 Total: -38.07 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.07 -8.36 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828765106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.668 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds