Wall clock time and date at job start Tue Mar 31 2020 17:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46855 * 2 1 4 4 H 1.08997 * 109.47040 * 55.00140 * 3 2 1 5 5 C 1.52995 * 109.47141 * 294.99933 * 3 2 1 6 6 C 1.50697 * 109.46562 * 174.99617 * 3 2 1 7 7 C 1.38282 * 119.92702 * 59.73063 * 6 3 2 8 8 C 1.38118 * 120.06589 * 179.76348 * 7 6 3 9 9 C 1.38871 * 119.93047 * 0.48044 * 8 7 6 10 10 N 1.39923 * 120.06964 * 179.79057 * 9 8 7 11 11 C 1.34778 * 120.00004 * 144.53183 * 10 9 8 12 12 O 1.21284 * 120.00033 * 4.54470 * 11 10 9 13 13 C 1.50702 * 119.99780 * 184.55492 * 11 10 9 14 14 N 1.46503 * 109.46438 * 185.14099 * 13 11 10 15 15 C 1.36934 * 119.99953 * 85.22150 * 14 13 11 16 16 H 1.07999 * 119.99834 * 345.58565 * 15 14 13 17 17 C 1.38810 * 120.00042 * 165.59630 * 15 14 13 18 18 N 1.31615 * 120.00294 * 0.52345 * 17 15 14 19 19 Si 1.86802 * 120.00212 * 180.52526 * 17 15 14 20 20 H 1.48503 * 109.47428 * 89.99463 * 19 17 15 21 21 H 1.48500 * 109.47587 * 210.00032 * 19 17 15 22 22 H 1.48507 * 109.47091 * 329.99794 * 19 17 15 23 23 C 1.46504 * 119.99959 * 265.20944 * 14 13 11 24 24 C 1.50702 * 109.47128 * 264.54400 * 23 14 13 25 25 O 1.20823 * 119.99953 * 5.29160 * 24 23 14 26 26 O 1.34224 * 119.99662 * 185.29400 * 24 23 14 27 27 C 1.38873 * 119.85591 * 359.77138 * 9 8 7 28 28 C 1.38105 * 119.93494 * 359.97438 * 27 9 8 29 29 H 1.09001 * 109.47040 * 60.00210 * 1 2 3 30 30 H 1.09000 * 109.47385 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47764 * 300.00227 * 1 2 3 32 32 H 1.08996 * 109.46859 * 239.99805 * 2 1 3 33 33 H 1.08999 * 109.46832 * 120.00295 * 2 1 3 34 34 H 1.08997 * 109.47781 * 60.00000 * 5 3 2 35 35 H 1.09004 * 109.47207 * 180.02562 * 5 3 2 36 36 H 1.09005 * 109.47380 * 299.99717 * 5 3 2 37 37 H 1.07999 * 119.96936 * 359.97438 * 7 6 3 38 38 H 1.08007 * 120.03179 * 180.25099 * 8 7 6 39 39 H 0.97001 * 120.00188 * 324.52232 * 10 9 8 40 40 H 1.08997 * 109.46837 * 305.13843 * 13 11 10 41 41 H 1.08998 * 109.47559 * 65.14456 * 13 11 10 42 42 H 0.96997 * 120.00488 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.46754 * 24.54587 * 23 14 13 44 44 H 1.09001 * 109.46623 * 144.54056 * 23 14 13 45 45 H 0.96704 * 117.00242 * 179.97438 * 26 24 23 46 46 H 1.08006 * 120.03081 * 179.97438 * 27 9 8 47 47 H 1.07994 * 119.96612 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5419 1.4443 0.1239 7 6 4.3138 0.8111 -0.8329 8 6 5.6907 0.8151 -0.7247 9 6 6.2994 1.4473 0.3516 10 7 7.6939 1.4493 0.4663 11 6 8.3267 2.5259 0.9733 12 8 7.6842 3.4591 1.4060 13 6 9.8328 2.5702 1.0022 14 7 10.2723 3.7777 1.7059 15 6 10.3813 3.7731 3.0709 16 1 9.9309 2.9776 3.6459 17 6 11.0706 4.7911 3.7155 18 7 11.6105 5.7662 3.0155 19 14 11.2319 4.7772 5.5765 20 1 12.4613 4.0384 5.9613 21 1 11.3160 6.1729 6.0766 22 1 10.0465 4.1089 6.1711 23 6 10.5953 4.9899 0.9493 24 6 12.0800 5.0435 0.6965 25 8 12.7821 4.1155 1.0215 26 8 12.6224 6.1224 0.1103 27 6 5.5210 2.0777 1.3135 28 6 4.1449 2.0747 1.1969 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.5490 2.1252 -1.3970 35 1 1.9989 3.1541 -1.3075 36 1 2.0699 1.5876 -2.1492 37 1 3.8397 0.3159 -1.6674 38 1 6.2932 0.3239 -1.4745 39 1 8.2052 0.6759 0.1812 40 1 10.2123 1.6894 1.5200 41 1 10.2156 2.5849 -0.0183 42 1 12.0925 6.4773 3.4659 43 1 10.0649 4.9760 -0.0028 44 1 10.2921 5.8668 1.5213 45 1 13.5790 6.1111 -0.0307 46 1 5.9914 2.5698 2.1520 47 1 3.5391 2.5651 1.9444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000828765106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:25 Heat of formation + Delta-G solvation = -100.804698 kcal Electronic energy + Delta-G solvation = -28561.128470 eV Core-core repulsion = 24515.729428 eV Total energy + Delta-G solvation = -4045.399043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.43954 -40.50940 -39.84137 -37.59357 -36.95264 -36.12438 -35.13138 -33.42683 -31.82790 -31.42173 -30.02098 -29.11140 -28.08346 -25.60805 -24.56761 -24.00055 -22.82768 -22.06532 -21.41289 -20.55158 -19.11992 -18.55354 -18.44571 -17.87996 -17.22031 -16.79070 -16.73013 -16.46897 -15.93274 -15.84343 -15.46172 -15.27471 -15.00866 -14.90034 -14.71245 -14.54117 -14.23881 -13.75231 -13.68134 -13.52806 -13.25543 -13.11202 -12.93566 -12.84137 -12.74573 -12.51537 -12.37311 -12.16719 -12.13497 -12.02314 -11.87632 -11.68806 -11.56193 -11.38225 -11.25949 -11.00155 -10.73952 -10.55613 -9.80250 -9.10440 -8.87887 -7.96169 -5.38595 0.37625 0.52896 1.43163 1.44185 1.52586 1.79302 2.03165 2.17321 2.48077 2.84662 2.90959 3.31562 3.52848 3.79411 3.88142 4.02950 4.16238 4.22312 4.24848 4.45231 4.52714 4.54455 4.55029 4.58425 4.68811 4.70040 4.76969 4.82421 4.84027 5.07730 5.16681 5.18858 5.20253 5.25515 5.26760 5.31040 5.44162 5.44961 5.50160 5.51230 5.59157 5.67699 5.80934 6.14626 6.18927 6.22264 6.60361 6.97250 7.36617 7.61162 7.77876 8.01996 9.07899 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018311 B = 0.002467 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.758728 B =11346.725916 C =12130.763833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.048 4.048 4 H 0.072 0.928 5 C -0.143 4.143 6 C -0.096 4.096 7 C -0.095 4.095 8 C -0.141 4.141 9 C 0.129 3.871 10 N -0.668 5.668 11 C 0.483 3.517 12 O -0.547 6.547 13 C 0.132 3.868 14 N -0.568 5.568 15 C -0.234 4.234 16 H 0.077 0.923 17 C -0.056 4.056 18 N -0.939 5.939 19 Si 0.981 3.019 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.273 1.273 23 C 0.197 3.803 24 C 0.498 3.502 25 O -0.573 6.573 26 O -0.532 6.532 27 C -0.145 4.145 28 C -0.113 4.113 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.425 0.575 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.252 0.748 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.399 0.601 46 H 0.103 0.897 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.329 -12.142 -11.808 24.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.066 4.066 4 H 0.090 0.910 5 C -0.200 4.200 6 C -0.097 4.097 7 C -0.114 4.114 8 C -0.161 4.161 9 C 0.035 3.965 10 N -0.316 5.316 11 C 0.270 3.730 12 O -0.422 6.422 13 C 0.002 3.998 14 N -0.287 5.287 15 C -0.363 4.363 16 H 0.094 0.906 17 C -0.248 4.248 18 N -0.590 5.590 19 Si 0.809 3.191 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.198 1.198 23 C 0.068 3.932 24 C 0.341 3.659 25 O -0.464 6.464 26 O -0.343 6.343 27 C -0.166 4.166 28 C -0.131 4.131 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.263 0.737 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.257 0.743 46 H 0.121 0.879 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.862 -11.554 -11.240 24.060 hybrid contribution 1.571 0.208 1.337 2.073 sum -16.291 -11.346 -9.903 22.185 Atomic orbital electron populations 1.21830 0.94939 1.02060 1.02183 1.21555 0.96371 0.94760 1.02246 1.20159 0.89436 0.97583 0.99463 0.90976 1.21884 1.01992 0.99893 0.96225 1.20057 0.96527 0.98286 0.94829 1.21047 0.92451 0.98787 0.99081 1.21183 0.95790 1.02786 0.96370 1.18052 0.83274 1.00111 0.95091 1.43656 1.04839 1.19232 1.63909 1.23049 0.93115 0.81232 0.75649 1.90653 1.68374 1.38138 1.45007 1.20927 0.87965 0.91363 0.99548 1.43539 1.73820 1.08295 1.03005 1.19510 1.26085 1.08119 0.82572 0.90560 1.25538 0.98999 0.97621 1.02648 1.69624 1.41169 1.13717 1.34452 0.85047 0.77614 0.76547 0.79848 1.21677 1.21757 1.19825 1.20219 0.85813 0.92303 0.94855 1.24749 0.94011 0.77359 0.69809 1.90453 1.64299 1.40762 1.50862 1.84530 1.29752 1.45467 1.74504 1.21223 0.94491 1.01721 0.99144 1.21069 0.93438 0.99769 0.98841 0.91728 0.92205 0.93002 0.90975 0.92778 0.90895 0.93784 0.91733 0.83173 0.83074 0.73685 0.88596 0.87709 0.93809 0.91441 0.88354 0.74302 0.87918 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.67 71.98 0.70 -0.91 16 2 C -0.11 -1.44 5.14 30.60 0.16 -1.28 16 3 C -0.05 -0.76 2.56 -11.54 -0.03 -0.79 16 4 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 5 C -0.14 -1.95 8.76 71.98 0.63 -1.32 16 6 C -0.10 -2.03 4.78 -19.84 -0.09 -2.12 16 7 C -0.10 -1.78 8.75 22.25 0.19 -1.59 16 8 C -0.14 -2.95 9.97 22.39 0.22 -2.73 16 9 C 0.13 3.64 6.29 38.15 0.24 3.88 16 10 N -0.67 -18.27 5.34 -303.50 -1.62 -19.88 16 11 C 0.48 17.79 7.71 87.66 0.68 18.46 16 12 O -0.55 -25.45 13.89 -3.04 -0.04 -25.49 16 13 C 0.13 4.95 6.13 85.63 0.53 5.48 16 14 N -0.57 -27.90 1.56 -710.68 -1.11 -29.01 16 15 C -0.23 -12.79 9.70 84.03 0.81 -11.97 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.06 -3.14 5.36 84.86 0.46 -2.69 16 18 N -0.94 -53.89 7.97 21.65 0.17 -53.72 16 19 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.20 9.57 5.57 85.63 0.48 10.05 16 24 C 0.50 24.24 5.93 71.24 0.42 24.66 16 25 O -0.57 -31.08 17.06 21.97 0.37 -30.70 16 26 O -0.53 -21.99 13.42 -51.36 -0.69 -22.68 16 27 C -0.15 -4.74 8.69 22.39 0.19 -4.55 16 28 C -0.11 -3.02 9.66 22.25 0.21 -2.81 16 29 H 0.06 0.58 6.57 -2.39 -0.02 0.57 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.80 7.55 -2.39 -0.02 0.79 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.78 6.56 -2.39 -0.02 0.77 16 35 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.06 0.77 7.40 -2.38 -0.02 0.75 16 37 H 0.15 1.90 7.15 -2.91 -0.02 1.88 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.42 8.02 8.82 -92.71 -0.82 7.20 16 40 H 0.10 3.31 8.08 -2.39 -0.02 3.29 16 41 H 0.11 3.33 8.04 -2.39 -0.02 3.31 16 42 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.07 2.87 8.03 -2.39 -0.02 2.85 16 44 H 0.10 5.43 6.27 -2.39 -0.01 5.41 16 45 H 0.40 12.91 9.10 -74.05 -0.67 12.23 16 46 H 0.10 4.10 6.26 -2.91 -0.02 4.08 16 47 H 0.12 3.05 7.94 -2.91 -0.02 3.02 16 Total: -1.00 -75.77 387.19 4.43 -71.34 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.49 Total: 31.68 kcal Atomic # 6 Polarization: 23.99 SS G_CDS: 5.80 Total: 29.79 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -2.55 Total: -102.61 kcal Atomic # 8 Polarization: -78.52 SS G_CDS: -0.36 Total: -78.88 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -75.77 4.43 -71.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000828765106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.463 kcal (2) G-P(sol) polarization free energy of solvation -75.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds