Wall clock time and date at job start Tue Mar 31 2020 17:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40108 * 119.99646 * 2 1 4 4 C 1.34773 * 120.00399 * 75.00202 * 3 2 1 5 5 O 1.21282 * 119.99503 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00092 * 179.97438 * 4 3 2 7 7 C 1.50707 * 109.47262 * 179.97438 * 6 4 3 8 8 C 1.37643 * 120.12639 * 265.30991 * 7 6 4 9 9 C 1.38615 * 120.24281 * 180.31829 * 8 7 6 10 10 C 1.38658 * 120.50051 * 359.66907 * 9 8 7 11 11 C 1.37593 * 120.25264 * 0.02562 * 10 9 8 12 12 C 1.40688 * 120.12508 * 84.99750 * 7 6 4 13 13 C 1.41401 * 120.24844 * 359.97438 * 12 7 6 14 14 H 1.07999 * 119.99289 * 334.28466 * 13 12 7 15 15 C 1.39937 * 120.00394 * 154.28925 * 13 12 7 16 16 N 1.30829 * 120.00181 * 334.60180 * 15 13 12 17 17 Si 1.86801 * 120.00083 * 154.60226 * 15 13 12 18 18 H 1.48505 * 109.47160 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47100 * 300.00105 * 17 15 13 20 20 H 1.48502 * 109.47051 * 60.00179 * 17 15 13 21 21 C 1.34769 * 120.00335 * 179.97438 * 2 1 3 22 22 O 1.21511 * 119.99575 * 0.02562 * 21 2 1 23 23 O 1.34633 * 120.00225 * 180.02562 * 21 2 1 24 24 C 1.45208 * 117.00059 * 180.02562 * 23 21 2 25 25 C 1.53001 * 109.47028 * 59.99726 * 24 23 21 26 26 C 1.52995 * 109.47186 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.46795 * 300.00355 * 24 23 21 28 28 H 1.09002 * 109.46765 * 89.99901 * 1 2 3 29 29 H 1.08999 * 109.47259 * 210.00121 * 1 2 3 30 30 H 1.09003 * 109.47174 * 330.00572 * 1 2 3 31 31 H 0.97000 * 119.99572 * 254.99500 * 3 2 1 32 32 H 1.09001 * 109.46892 * 59.99768 * 6 4 3 33 33 H 1.08991 * 109.47294 * 299.99778 * 6 4 3 34 34 H 1.07998 * 119.87840 * 0.02562 * 8 7 6 35 35 H 1.07996 * 119.74749 * 179.68975 * 9 8 7 36 36 H 1.08000 * 119.87393 * 180.02562 * 10 9 8 37 37 H 1.07996 * 120.12941 * 180.02562 * 11 10 9 38 38 H 0.96998 * 119.99709 * 354.17607 * 16 15 13 39 39 H 1.08997 * 109.46755 * 60.00435 * 25 24 23 40 40 H 1.09001 * 109.46841 * 179.97438 * 25 24 23 41 41 H 1.08994 * 109.47561 * 300.00266 * 25 24 23 42 42 H 1.09000 * 109.47095 * 59.99968 * 26 24 23 43 43 H 1.09004 * 109.46831 * 179.97438 * 26 24 23 44 44 H 1.08997 * 109.47446 * 300.00085 * 26 24 23 45 45 H 1.08995 * 109.47695 * 59.99573 * 27 24 23 46 46 H 1.09001 * 109.46852 * 180.02562 * 27 24 23 47 47 H 1.09000 * 109.46942 * 299.99699 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1655 1.2134 0.0000 4 6 2.2408 1.9481 1.1274 5 8 1.7019 1.5590 2.1418 6 6 2.9947 3.2529 1.1274 7 6 2.9269 3.8723 2.4997 8 6 1.9568 4.8047 2.7896 9 6 1.8962 5.3808 4.0489 10 6 2.8054 5.0208 5.0319 11 6 3.7797 4.0862 4.7663 12 6 3.8507 3.4947 3.4913 13 6 4.8472 2.5326 3.2071 14 1 4.6827 1.7973 2.4334 15 6 6.0463 2.5331 3.9284 16 7 6.4773 3.6381 4.4804 17 14 7.0319 0.9558 4.1032 18 1 8.2523 1.2211 4.9067 19 1 6.2042 -0.0722 4.7838 20 1 7.4230 0.4649 2.7574 21 6 2.1389 -1.1671 0.0005 22 8 1.5313 -2.2194 0.0005 23 8 3.4852 -1.1671 0.0010 24 6 4.1445 -2.4609 0.0010 25 6 3.7338 -3.2425 -1.2485 26 6 5.6613 -2.2604 0.0010 27 6 3.7328 -3.2430 1.2499 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 2.5963 1.5247 -0.8114 32 1 2.5474 3.9310 0.4006 33 1 4.0360 3.0709 0.8617 34 1 1.2431 5.0920 2.0316 35 1 1.1348 6.1152 4.2661 36 1 2.7487 5.4758 6.0098 37 1 4.4866 3.8070 5.5336 38 1 6.0118 4.4739 4.3200 39 1 4.0271 -2.6853 -2.1382 40 1 4.2291 -4.2135 -1.2488 41 1 2.6533 -3.3853 -1.2490 42 1 5.9541 -1.7034 0.8910 43 1 6.1561 -3.2316 0.0014 44 1 5.9542 -1.7033 -0.8889 45 1 2.6523 -3.3858 1.2495 46 1 4.2281 -4.2140 1.2501 47 1 4.0253 -2.6862 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838369514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:21 Heat of formation + Delta-G solvation = -69.930214 kcal Electronic energy + Delta-G solvation = -30153.131803 eV Core-core repulsion = 26109.071578 eV Total energy + Delta-G solvation = -4044.060225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85554 -39.39341 -37.83896 -37.14668 -35.55788 -33.91246 -33.86530 -32.27901 -31.11531 -29.23273 -27.46550 -27.39968 -27.35351 -26.52028 -24.91023 -22.31762 -21.17783 -20.95352 -19.78169 -19.72843 -18.49651 -17.73885 -16.84596 -16.81966 -15.89797 -15.76944 -15.15395 -14.85312 -14.76561 -14.44552 -14.20832 -13.96941 -13.58349 -13.47290 -13.44132 -13.28780 -12.62532 -12.40067 -12.31535 -12.21087 -12.04235 -11.92335 -11.89675 -11.78977 -11.49534 -11.41321 -11.27043 -11.22061 -10.87001 -10.48999 -10.40332 -10.35819 -10.24168 -9.79323 -9.68312 -9.39613 -9.32843 -8.96945 -8.80141 -7.58280 -7.52448 -7.13836 -4.43452 1.66649 2.69366 2.78125 2.83630 3.01056 3.11066 3.14655 3.28201 3.36976 4.01685 4.53246 4.61984 4.68959 4.74112 4.87832 5.18567 5.33859 5.38750 5.42220 5.51339 5.59306 5.61438 5.65931 5.70381 5.79070 5.83101 5.83858 5.95061 5.97181 6.14092 6.16242 6.24149 6.28085 6.33744 6.37790 6.61093 6.65460 6.98268 7.18917 7.39378 7.40880 7.54534 7.70443 7.81792 7.84500 7.94145 8.18988 8.22740 8.33015 8.76214 8.77770 8.91098 10.06283 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004831 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.706290 B = 5794.623652 C = 7859.671164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.395 5.395 3 N -0.533 5.533 4 C 0.516 3.484 5 O -0.502 6.502 6 C -0.058 4.058 7 C -0.191 4.191 8 C -0.066 4.066 9 C -0.254 4.254 10 C -0.085 4.085 11 C -0.215 4.215 12 C 0.117 3.883 13 C -0.514 4.514 14 H 0.073 0.927 15 C 0.042 3.958 16 N -0.797 5.797 17 Si 1.056 2.944 18 H -0.274 1.274 19 H -0.275 1.275 20 H -0.274 1.274 21 C 0.662 3.338 22 O -0.564 6.564 23 O -0.350 6.350 24 C 0.134 3.866 25 C -0.181 4.181 26 C -0.143 4.143 27 C -0.185 4.185 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.413 0.587 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.300 0.700 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.984 -8.051 -12.368 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.224 5.224 3 N -0.287 5.287 4 C 0.303 3.697 5 O -0.372 6.372 6 C -0.099 4.099 7 C -0.193 4.193 8 C -0.084 4.084 9 C -0.273 4.273 10 C -0.103 4.103 11 C -0.234 4.234 12 C 0.114 3.886 13 C -0.542 4.542 14 H 0.091 0.909 15 C -0.180 4.180 16 N -0.420 5.420 17 Si 0.879 3.121 18 H -0.198 1.198 19 H -0.200 1.200 20 H -0.200 1.200 21 C 0.417 3.583 22 O -0.451 6.451 23 O -0.264 6.264 24 C 0.097 3.903 25 C -0.238 4.238 26 C -0.200 4.200 27 C -0.242 4.242 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.254 0.746 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.088 0.912 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.133 -9.356 -10.862 14.493 hybrid contribution -1.271 0.775 -1.025 1.807 sum -3.403 -8.581 -11.886 15.049 Atomic orbital electron populations 1.21860 0.74339 1.04657 1.01996 1.45770 1.03976 0.95451 1.77252 1.45589 1.55732 1.12793 1.14621 1.21971 0.80048 0.85967 0.81666 1.90720 1.44313 1.70637 1.31501 1.20202 1.00826 0.90780 0.98127 1.18937 1.03400 1.03564 0.93361 1.20355 0.95969 0.96415 0.95653 1.20258 1.04025 1.07803 0.95250 1.20618 0.95382 0.97284 0.97022 1.21145 1.02145 1.03097 0.97040 1.17387 0.91239 0.89884 0.90046 1.20467 1.00910 1.13508 1.19293 0.90850 1.26898 0.96713 1.03073 0.91338 1.70455 1.38012 1.00871 1.32652 0.83777 0.76271 0.74177 0.77834 1.19841 1.20027 1.19982 1.18082 0.81498 0.83105 0.75606 1.90901 1.69317 1.28427 1.56477 1.86406 1.18121 1.35857 1.86014 1.22113 0.92196 0.79542 0.96403 1.22511 1.04669 1.00201 0.96453 1.21875 0.91232 1.02995 1.03914 1.22522 1.04638 1.00162 0.96896 0.92129 0.89297 0.90043 0.74626 0.90004 0.88012 0.89516 0.89415 0.89363 0.87750 0.88682 0.92251 0.91159 0.89569 0.90972 0.90175 0.91434 0.89579 0.91170 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.43 10.51 59.85 0.63 2.05 16 2 N -0.39 -6.08 3.15 -72.13 -0.23 -6.31 16 3 N -0.53 -7.96 5.54 31.22 0.17 -7.79 16 4 C 0.52 9.76 7.45 -10.99 -0.08 9.68 16 5 O -0.50 -11.91 16.21 5.56 0.09 -11.82 16 6 C -0.06 -1.07 5.18 -29.03 -0.15 -1.22 16 7 C -0.19 -4.40 4.43 -103.91 -0.46 -4.86 16 8 C -0.07 -1.45 9.66 -39.66 -0.38 -1.83 16 9 C -0.25 -5.71 10.05 -39.29 -0.39 -6.10 16 10 C -0.08 -2.00 10.02 -39.66 -0.40 -2.40 16 11 C -0.22 -5.58 7.95 -38.87 -0.31 -5.89 16 12 C 0.12 3.05 5.30 -106.82 -0.57 2.48 16 13 C -0.51 -13.32 8.08 -37.74 -0.30 -13.62 16 14 H 0.07 1.89 6.73 -52.49 -0.35 1.54 16 15 C 0.04 1.05 4.94 -17.34 -0.09 0.97 16 16 N -0.80 -20.83 12.31 55.55 0.68 -20.14 16 17 Si 1.06 21.87 30.00 -169.99 -5.10 16.77 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 21 C 0.66 10.96 7.84 54.05 0.42 11.38 16 22 O -0.56 -9.62 11.46 -19.28 -0.22 -9.84 16 23 O -0.35 -5.66 9.49 -40.30 -0.38 -6.04 16 24 C 0.13 1.79 1.13 -90.62 -0.10 1.69 16 25 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 26 C -0.14 -1.63 8.85 37.15 0.33 -1.30 16 27 C -0.19 -2.52 8.37 37.16 0.31 -2.21 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 30 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 31 H 0.41 4.69 8.83 -182.59 -1.61 3.07 16 32 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 33 H 0.10 1.85 7.06 -51.93 -0.37 1.49 16 34 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.10 2.80 6.49 -52.49 -0.34 2.46 16 38 H 0.30 8.00 6.68 -40.82 -0.27 7.72 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 388.03 15.07 5.85 5.85 Total: -1.00 -32.15 388.03 -8.59 -40.74 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -8.23 Total: 11.49 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.23 Total: -12.91 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.63 Total: -34.24 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.51 Total: -27.70 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.10 Total: 16.77 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.15 -8.59 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838369514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.189 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds