Wall clock time and date at job start Tue Mar 31 2020 17:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40108 * 119.99646 * 2 1 4 4 C 1.34773 * 120.00399 * 75.00202 * 3 2 1 5 5 O 1.21282 * 119.99503 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00092 * 179.97438 * 4 3 2 7 7 C 1.50707 * 109.47262 * 179.97438 * 6 4 3 8 8 C 1.37643 * 120.12639 * 265.30991 * 7 6 4 9 9 C 1.38615 * 120.24281 * 180.31829 * 8 7 6 10 10 C 1.38658 * 120.50051 * 359.66907 * 9 8 7 11 11 C 1.37593 * 120.25264 * 0.02562 * 10 9 8 12 12 C 1.40688 * 120.12508 * 84.99750 * 7 6 4 13 13 C 1.41401 * 120.24844 * 359.97438 * 12 7 6 14 14 H 1.07999 * 119.99289 * 334.28466 * 13 12 7 15 15 C 1.39937 * 120.00394 * 154.28925 * 13 12 7 16 16 N 1.30829 * 120.00181 * 334.60180 * 15 13 12 17 17 Si 1.86801 * 120.00083 * 154.60226 * 15 13 12 18 18 H 1.48505 * 109.47160 * 179.97438 * 17 15 13 19 19 H 1.48495 * 109.47100 * 300.00105 * 17 15 13 20 20 H 1.48502 * 109.47051 * 60.00179 * 17 15 13 21 21 C 1.34769 * 120.00335 * 179.97438 * 2 1 3 22 22 O 1.21511 * 119.99575 * 0.02562 * 21 2 1 23 23 O 1.34633 * 120.00225 * 180.02562 * 21 2 1 24 24 C 1.45208 * 117.00059 * 180.02562 * 23 21 2 25 25 C 1.53001 * 109.47028 * 59.99726 * 24 23 21 26 26 C 1.52995 * 109.47186 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.46795 * 300.00355 * 24 23 21 28 28 H 1.09002 * 109.46765 * 89.99901 * 1 2 3 29 29 H 1.08999 * 109.47259 * 210.00121 * 1 2 3 30 30 H 1.09003 * 109.47174 * 330.00572 * 1 2 3 31 31 H 0.97000 * 119.99572 * 254.99500 * 3 2 1 32 32 H 1.09001 * 109.46892 * 59.99768 * 6 4 3 33 33 H 1.08991 * 109.47294 * 299.99778 * 6 4 3 34 34 H 1.07998 * 119.87840 * 0.02562 * 8 7 6 35 35 H 1.07996 * 119.74749 * 179.68975 * 9 8 7 36 36 H 1.08000 * 119.87393 * 180.02562 * 10 9 8 37 37 H 1.07996 * 120.12941 * 180.02562 * 11 10 9 38 38 H 0.96998 * 119.99709 * 354.17607 * 16 15 13 39 39 H 1.08997 * 109.46755 * 60.00435 * 25 24 23 40 40 H 1.09001 * 109.46841 * 179.97438 * 25 24 23 41 41 H 1.08994 * 109.47561 * 300.00266 * 25 24 23 42 42 H 1.09000 * 109.47095 * 59.99968 * 26 24 23 43 43 H 1.09004 * 109.46831 * 179.97438 * 26 24 23 44 44 H 1.08997 * 109.47446 * 300.00085 * 26 24 23 45 45 H 1.08995 * 109.47695 * 59.99573 * 27 24 23 46 46 H 1.09001 * 109.46852 * 180.02562 * 27 24 23 47 47 H 1.09000 * 109.46942 * 299.99699 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1655 1.2134 0.0000 4 6 2.2408 1.9481 1.1274 5 8 1.7019 1.5590 2.1418 6 6 2.9947 3.2529 1.1274 7 6 2.9269 3.8723 2.4997 8 6 1.9568 4.8047 2.7896 9 6 1.8962 5.3808 4.0489 10 6 2.8054 5.0208 5.0319 11 6 3.7797 4.0862 4.7663 12 6 3.8507 3.4947 3.4913 13 6 4.8472 2.5326 3.2071 14 1 4.6827 1.7973 2.4334 15 6 6.0463 2.5331 3.9284 16 7 6.4773 3.6381 4.4804 17 14 7.0319 0.9558 4.1032 18 1 8.2523 1.2211 4.9067 19 1 6.2042 -0.0722 4.7838 20 1 7.4230 0.4649 2.7574 21 6 2.1389 -1.1671 0.0005 22 8 1.5313 -2.2194 0.0005 23 8 3.4852 -1.1671 0.0010 24 6 4.1445 -2.4609 0.0010 25 6 3.7338 -3.2425 -1.2485 26 6 5.6613 -2.2604 0.0010 27 6 3.7328 -3.2430 1.2499 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8901 0.5138 31 1 2.5963 1.5247 -0.8114 32 1 2.5474 3.9310 0.4006 33 1 4.0360 3.0709 0.8617 34 1 1.2431 5.0920 2.0316 35 1 1.1348 6.1152 4.2661 36 1 2.7487 5.4758 6.0098 37 1 4.4866 3.8070 5.5336 38 1 6.0118 4.4739 4.3200 39 1 4.0271 -2.6853 -2.1382 40 1 4.2291 -4.2135 -1.2488 41 1 2.6533 -3.3853 -1.2490 42 1 5.9541 -1.7034 0.8910 43 1 6.1561 -3.2316 0.0014 44 1 5.9542 -1.7033 -0.8889 45 1 2.6523 -3.3858 1.2495 46 1 4.2281 -4.2140 1.2501 47 1 4.0253 -2.6862 2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838369514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:20 Heat of formation + Delta-G solvation = -88.748597 kcal Electronic energy + Delta-G solvation = -30153.947829 eV Core-core repulsion = 26109.071578 eV Total energy + Delta-G solvation = -4044.876251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.06994 -40.87491 -39.47334 -38.46741 -36.91326 -35.73222 -34.98505 -33.84800 -32.56612 -31.09039 -28.78591 -28.40275 -28.31321 -27.91468 -26.76429 -23.62070 -22.81606 -22.52457 -21.38860 -21.01585 -19.77076 -19.52436 -18.25700 -17.98217 -17.15006 -17.00529 -16.81647 -16.51046 -16.07594 -15.88951 -15.60723 -15.48986 -15.12632 -15.01006 -14.54324 -14.38332 -14.20217 -13.86252 -13.64828 -13.53050 -13.29578 -13.13873 -13.00251 -12.94596 -12.89874 -12.80843 -12.62104 -12.53537 -12.46446 -12.25513 -12.00335 -11.48579 -11.45105 -11.42261 -11.26057 -11.21458 -10.83521 -10.71823 -10.06575 -9.43044 -9.41832 -9.05025 -6.38620 0.45235 0.96385 1.00847 1.44387 1.52653 1.60061 1.64454 1.73466 1.77145 2.29406 2.71442 3.33372 3.64223 3.70604 3.76590 3.91161 3.99549 4.20570 4.31031 4.38586 4.45854 4.49918 4.52222 4.59453 4.59633 4.67363 4.72734 4.73462 4.73777 4.82770 4.83954 4.97789 5.00315 5.09302 5.17033 5.24120 5.29261 5.33928 5.50141 5.51406 5.80269 5.86227 5.99772 6.06979 6.11029 6.29068 6.34378 6.47360 6.86767 6.95386 7.03144 7.42516 8.09698 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004831 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.706290 B = 5794.623652 C = 7859.671164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.399 5.399 3 N -0.513 5.513 4 C 0.523 3.477 5 O -0.557 6.557 6 C -0.057 4.057 7 C -0.193 4.193 8 C -0.074 4.074 9 C -0.251 4.251 10 C -0.096 4.096 11 C -0.246 4.246 12 C 0.088 3.912 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.008 3.992 16 N -0.819 5.819 17 Si 1.096 2.904 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.247 1.247 21 C 0.654 3.346 22 O -0.574 6.574 23 O -0.366 6.366 24 C 0.121 3.879 25 C -0.172 4.172 26 C -0.140 4.140 27 C -0.182 4.182 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.434 0.566 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.285 0.715 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -8.494 -14.904 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.230 5.230 3 N -0.267 5.267 4 C 0.311 3.689 5 O -0.432 6.432 6 C -0.098 4.098 7 C -0.194 4.194 8 C -0.092 4.092 9 C -0.270 4.270 10 C -0.115 4.115 11 C -0.265 4.265 12 C 0.085 3.915 13 C -0.566 4.566 14 H 0.085 0.915 15 C -0.209 4.209 16 N -0.442 5.442 17 Si 0.914 3.086 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.171 1.171 21 C 0.409 3.591 22 O -0.462 6.462 23 O -0.280 6.280 24 C 0.085 3.915 25 C -0.229 4.229 26 C -0.197 4.197 27 C -0.240 4.240 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.278 0.722 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.125 0.875 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.129 0.871 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.527 -9.783 -13.466 16.836 hybrid contribution -1.303 0.963 -0.262 1.642 sum -3.831 -8.820 -13.728 16.761 Atomic orbital electron populations 1.22031 0.72835 1.04081 1.04070 1.46038 1.04843 0.95102 1.76999 1.45203 1.55031 1.12121 1.14360 1.21896 0.79163 0.86195 0.81626 1.90709 1.46856 1.71982 1.33633 1.20234 1.01365 0.91431 0.96728 1.19443 1.02154 1.03049 0.94801 1.20836 0.96182 0.95694 0.96534 1.20724 1.03686 1.07545 0.95059 1.20905 0.95131 0.96900 0.98541 1.21138 1.03182 1.05150 0.97071 1.17766 0.92446 0.90448 0.90847 1.20517 1.01640 1.14160 1.20288 0.91475 1.28060 0.97490 1.04825 0.90515 1.70549 1.38452 1.00807 1.34412 0.83287 0.75157 0.70907 0.79214 1.19288 1.20580 1.17071 1.18282 0.81771 0.83327 0.75711 1.90894 1.69582 1.28769 1.56942 1.86402 1.17914 1.37760 1.85909 1.22511 0.93178 0.78818 0.97039 1.22427 1.03531 1.01291 0.95643 1.21926 0.89814 1.04625 1.03329 1.22501 1.03484 1.01569 0.96402 0.88638 0.90104 0.90404 0.72176 0.85269 0.87921 0.85672 0.86320 0.87501 0.90123 0.90240 0.91273 0.88610 0.91559 0.93023 0.87146 0.90479 0.91704 0.88142 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.63 10.51 127.77 1.34 3.97 16 2 N -0.40 -11.84 3.15 -612.52 -1.93 -13.77 16 3 N -0.51 -14.40 5.54 -173.54 -0.96 -15.36 16 4 C 0.52 19.16 7.45 87.66 0.65 19.81 16 5 O -0.56 -26.50 16.21 -3.04 -0.05 -26.55 16 6 C -0.06 -1.98 5.18 29.10 0.15 -1.83 16 7 C -0.19 -8.73 4.43 -19.40 -0.09 -8.81 16 8 C -0.07 -3.11 9.66 22.22 0.21 -2.89 16 9 C -0.25 -10.81 10.05 22.46 0.23 -10.58 16 10 C -0.10 -4.57 10.02 22.22 0.22 -4.35 16 11 C -0.25 -13.24 7.95 22.73 0.18 -13.05 16 12 C 0.09 4.65 5.30 -21.29 -0.11 4.54 16 13 C -0.54 -28.74 8.08 23.46 0.19 -28.55 16 14 H 0.07 3.55 6.73 -2.91 -0.02 3.53 16 15 C 0.01 0.40 4.94 85.25 0.42 0.82 16 16 N -0.82 -44.58 12.31 21.82 0.27 -44.31 16 17 Si 1.10 44.89 30.00 68.60 2.06 46.95 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 21 C 0.65 21.26 7.84 129.79 1.02 22.27 16 22 O -0.57 -19.44 11.46 19.81 0.23 -19.21 16 23 O -0.37 -11.55 9.49 -55.42 -0.53 -12.08 16 24 C 0.12 3.05 1.13 -10.79 -0.01 3.04 16 25 C -0.17 -3.51 8.37 71.98 0.60 -2.91 16 26 C -0.14 -2.88 8.85 71.98 0.64 -2.25 16 27 C -0.18 -4.88 8.37 71.98 0.60 -4.27 16 28 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 2.07 7.42 -2.39 -0.02 2.05 16 30 H 0.08 1.93 8.06 -2.39 -0.02 1.91 16 31 H 0.43 8.69 8.83 -213.32 -1.88 6.80 16 32 H 0.13 3.23 8.05 -2.39 -0.02 3.21 16 33 H 0.10 3.61 7.06 -2.39 -0.02 3.59 16 34 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 37 H 0.08 4.60 6.49 -2.91 -0.02 4.59 16 38 H 0.29 16.06 6.68 -92.71 -0.62 15.44 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.07 1.65 5.88 -2.39 -0.01 1.63 16 42 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 2.01 5.88 -2.39 -0.01 1.99 16 46 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -73.57 388.03 4.59 -68.98 By element: Atomic # 1 Polarization: 41.14 SS G_CDS: -0.75 Total: 40.40 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: 6.25 Total: -25.04 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -2.62 Total: -73.44 kcal Atomic # 8 Polarization: -57.50 SS G_CDS: -0.35 Total: -57.85 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.06 Total: 46.95 kcal Total: -73.57 4.59 -68.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838369514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.768 kcal (2) G-P(sol) polarization free energy of solvation -73.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds