Wall clock time and date at job start Tue Mar 31 2020 18:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47532 * 2 1 4 4 H 1.09007 * 109.47012 * 305.00323 * 3 2 1 5 5 C 1.52996 * 109.47216 * 184.99951 * 3 2 1 6 6 N 1.46497 * 109.46897 * 65.00091 * 3 2 1 7 7 C 1.46495 * 120.00254 * 60.00330 * 6 3 2 8 8 C 1.52997 * 109.47267 * 95.64274 * 7 6 3 9 9 C 1.34780 * 119.99905 * 240.00061 * 6 3 2 10 10 O 1.21356 * 120.00445 * 4.58825 * 9 6 3 11 11 C 1.49361 * 119.99863 * 184.58519 * 9 6 3 12 12 O 1.21368 * 119.99836 * 5.32535 * 11 9 6 13 13 N 1.34780 * 119.99677 * 185.32324 * 11 9 6 14 14 C 1.39726 * 119.99356 * 174.43379 * 13 11 9 15 15 C 1.39028 * 120.03569 * 149.22788 * 14 13 11 16 16 C 1.38139 * 120.05968 * 179.74235 * 15 14 13 17 17 C 1.38178 * 120.14119 * 0.55775 * 16 15 14 18 18 C 1.38923 * 120.08719 * 359.69819 * 17 16 15 19 19 O 1.35745 * 120.03134 * 179.97438 * 18 17 16 20 20 C 1.34833 * 117.00365 * 5.33722 * 19 18 17 21 21 H 1.08001 * 119.99412 * 5.35408 * 20 19 18 22 22 C 1.38645 * 119.99865 * 185.35380 * 20 19 18 23 23 N 1.31560 * 120.00731 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47008 * 59.99931 * 24 22 20 26 26 H 1.48496 * 109.47321 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47328 * 300.00188 * 24 22 20 28 28 C 1.38763 * 119.93389 * 0.02562 * 18 17 16 29 29 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46910 * 300.00053 * 1 2 3 31 31 H 1.09003 * 109.47584 * 59.99578 * 1 2 3 32 32 H 1.09005 * 109.46910 * 239.99947 * 2 1 3 33 33 H 1.09000 * 109.46894 * 120.00208 * 2 1 3 34 34 H 1.08997 * 109.47164 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47120 * 60.00516 * 5 3 2 36 36 H 1.08998 * 109.47166 * 300.00207 * 5 3 2 37 37 H 1.09006 * 109.47416 * 215.64648 * 7 6 3 38 38 H 1.09005 * 109.47192 * 335.64071 * 7 6 3 39 39 H 1.08996 * 109.46938 * 300.00019 * 8 7 6 40 40 H 1.08996 * 109.47307 * 60.00601 * 8 7 6 41 41 H 1.09008 * 109.47251 * 180.02562 * 8 7 6 42 42 H 0.96998 * 119.99750 * 354.43750 * 13 11 9 43 43 H 1.07999 * 119.96739 * 0.02562 * 15 14 13 44 44 H 1.07997 * 119.92962 * 180.27561 * 16 15 14 45 45 H 1.08004 * 119.95771 * 179.71921 * 17 16 15 46 46 H 0.96996 * 120.00819 * 180.02562 * 23 22 20 47 47 H 1.07993 * 120.06629 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6526 2.0974 1.2518 7 6 2.1140 1.5589 2.5337 8 6 3.3746 2.3046 2.9760 9 6 0.8715 3.1955 1.2241 10 8 0.4209 3.5932 0.1699 11 6 0.5605 3.9228 2.4911 12 8 1.0876 3.5838 3.5304 13 7 -0.3054 4.9555 2.4800 14 6 -0.6857 5.5611 3.6805 15 6 -1.0092 6.9130 3.7060 16 6 -1.3904 7.5110 4.8915 17 6 -1.4402 6.7709 6.0573 18 6 -1.1131 5.4208 6.0397 19 8 -1.1619 4.6949 7.1857 20 6 -1.6410 5.3149 8.2831 21 1 -2.0445 6.3137 8.2061 22 6 -1.6156 4.6700 9.5102 23 7 -1.1237 3.4535 9.6041 24 14 -2.2787 5.5291 11.0306 25 1 -3.7125 5.8579 10.8277 26 1 -2.1373 4.6334 12.2066 27 1 -1.5127 6.7794 11.2664 28 6 -0.7353 4.8154 4.8496 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9282 2.4718 -0.1262 35 1 3.8532 0.9569 -1.0571 36 1 3.9994 0.9051 0.7161 37 1 1.3337 1.6875 3.2839 38 1 2.3395 0.4983 2.4222 39 1 4.1548 2.1759 2.2258 40 1 3.1491 3.3651 3.0876 41 1 3.7182 1.9035 3.9296 42 1 -0.6646 5.2783 1.6388 43 1 -0.9669 7.4951 2.7973 44 1 -1.6455 8.5602 4.9081 45 1 -1.7342 7.2425 6.9834 46 1 -1.1062 3.0022 10.4625 47 1 -0.4809 3.7659 4.8334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850501146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:26 Heat of formation + Delta-G solvation = -59.345221 kcal Electronic energy + Delta-G solvation = -29254.561494 eV Core-core repulsion = 25210.960269 eV Total energy + Delta-G solvation = -4043.601225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17301 -39.53359 -38.44505 -37.30012 -36.59263 -34.37121 -33.50522 -32.26933 -30.47624 -30.15800 -29.62866 -28.63582 -25.62728 -25.13012 -23.79404 -23.51402 -22.29331 -21.45686 -20.51112 -19.42558 -18.36878 -17.80686 -17.31847 -17.00554 -16.08588 -15.85423 -15.28435 -15.11907 -14.82587 -14.56494 -14.28686 -14.05497 -14.02515 -13.66604 -13.63159 -13.52046 -13.43262 -13.05596 -12.81638 -12.58796 -12.48433 -12.28297 -11.96265 -11.76878 -11.63300 -11.45382 -11.34804 -11.22768 -11.08523 -11.02445 -10.94123 -10.79978 -10.77525 -10.49290 -9.81231 -9.53984 -9.13837 -8.95130 -8.83131 -7.75074 -7.21981 -6.44385 -4.03684 1.27679 2.13240 2.29495 2.33955 3.13458 3.13985 3.17425 3.25546 3.41783 3.96349 4.27460 4.46971 4.56704 4.71334 4.80207 4.91252 5.10830 5.11320 5.18798 5.27032 5.30915 5.34822 5.47552 5.49540 5.58928 5.60083 5.69800 5.76749 5.78486 5.83546 5.86452 5.99397 6.05163 6.09407 6.13777 6.27189 6.32994 6.39011 6.55915 6.73529 6.95678 6.98790 7.03914 7.30998 7.40991 7.44025 7.68591 7.77616 7.99885 8.10222 9.00498 9.70603 10.73268 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.002826 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.297113 B = 9906.865806 C =10888.446210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.131 3.869 4 H 0.103 0.897 5 C -0.162 4.162 6 N -0.575 5.575 7 C 0.099 3.901 8 C -0.164 4.164 9 C 0.512 3.488 10 O -0.526 6.526 11 C 0.495 3.505 12 O -0.478 6.478 13 N -0.638 5.638 14 C 0.173 3.827 15 C -0.232 4.232 16 C -0.056 4.056 17 C -0.243 4.243 18 C 0.168 3.832 19 O -0.172 6.172 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.941 3.059 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.189 4.189 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.417 0.583 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.271 0.729 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 -3.663 -17.819 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 C 0.029 3.971 4 H 0.121 0.879 5 C -0.220 4.220 6 N -0.308 5.308 7 C -0.023 4.023 8 C -0.222 4.222 9 C 0.295 3.705 10 O -0.403 6.403 11 C 0.277 3.723 12 O -0.351 6.351 13 N -0.284 5.284 14 C 0.080 3.920 15 C -0.253 4.253 16 C -0.075 4.075 17 C -0.263 4.263 18 C 0.113 3.887 19 O -0.075 6.075 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.495 5.495 24 Si 0.765 3.235 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.210 4.210 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.146 0.854 46 H 0.081 0.919 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.395 -4.188 -17.407 19.011 hybrid contribution -0.420 0.670 0.408 0.890 sum 5.974 -3.518 -16.999 18.359 Atomic orbital electron populations 1.21729 0.95194 1.01582 1.02329 1.21911 0.96879 0.95563 1.02775 1.21283 0.95279 0.93678 0.86904 0.87921 1.22216 0.94629 1.02685 1.02478 1.47921 1.48088 1.26413 1.08398 1.21949 0.99011 0.97414 0.83920 1.22222 0.96429 1.02509 1.01039 1.20128 0.79569 0.81621 0.89204 1.90725 1.51219 1.66503 1.31865 1.20118 0.80638 0.82025 0.89545 1.90819 1.48240 1.63537 1.32533 1.43065 1.43542 1.32179 1.09612 1.17174 0.98908 0.91414 0.84479 1.20277 1.13946 0.92424 0.98687 1.20513 0.96846 0.98427 0.91736 1.21213 1.11326 0.94567 0.99172 1.19087 0.91957 0.89946 0.87687 1.83998 1.71504 1.37647 1.14356 1.21290 1.39727 1.01443 0.84390 0.89044 1.25292 0.96940 0.95986 0.98235 1.70034 1.41874 1.11531 1.26012 0.85786 0.79304 0.78787 0.79578 1.19481 1.20285 1.19486 1.20029 1.10509 1.00736 0.89721 0.92611 0.92722 0.92530 0.90617 0.91257 0.92093 0.91308 0.91695 0.87826 0.90660 0.93134 0.91333 0.91425 0.74652 0.87138 0.86866 0.85352 0.91943 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.80 37.16 0.36 -1.00 16 2 C -0.13 -1.03 5.36 -26.73 -0.14 -1.17 16 3 C 0.13 1.20 2.63 -67.93 -0.18 1.02 16 4 H 0.10 1.06 6.91 -51.93 -0.36 0.70 16 5 C -0.16 -1.20 8.24 37.16 0.31 -0.90 16 6 N -0.57 -6.57 1.84 -166.65 -0.31 -6.87 16 7 C 0.10 1.11 4.92 -4.05 -0.02 1.09 16 8 C -0.16 -1.88 9.42 37.16 0.35 -1.53 16 9 C 0.51 7.09 7.69 -11.63 -0.09 7.00 16 10 O -0.53 -7.84 15.83 5.49 0.09 -7.75 16 11 C 0.50 7.81 7.36 -11.63 -0.09 7.73 16 12 O -0.48 -8.55 8.84 5.48 0.05 -8.50 16 13 N -0.64 -9.92 5.34 -10.31 -0.06 -9.97 16 14 C 0.17 3.22 6.33 -83.77 -0.53 2.69 16 15 C -0.23 -3.98 9.96 -39.33 -0.39 -4.37 16 16 C -0.06 -1.01 10.03 -39.64 -0.40 -1.41 16 17 C -0.24 -5.25 9.14 -39.35 -0.36 -5.61 16 18 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 19 O -0.17 -4.96 9.75 0.05 0.00 -4.96 16 20 C -0.39 -10.95 9.44 30.88 0.29 -10.66 16 21 H 0.09 2.34 5.28 -52.49 -0.28 2.06 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 23 N -0.86 -25.25 13.67 55.48 0.76 -24.49 16 24 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.19 -4.19 8.61 -39.19 -0.34 -4.52 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.60 7.75 -51.93 -0.40 0.19 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.52 6.50 -51.93 -0.34 0.18 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.46 6.60 -51.93 -0.34 0.12 16 37 H 0.10 1.42 5.90 -51.93 -0.31 1.11 16 38 H 0.08 0.68 6.36 -51.93 -0.33 0.35 16 39 H 0.05 0.49 6.07 -51.93 -0.32 0.17 16 40 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 41 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.42 5.44 8.29 -40.82 -0.34 5.10 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.13 2.75 5.69 -52.48 -0.30 2.45 16 46 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.13 3.04 6.21 -52.49 -0.33 2.72 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -31.73 378.39 -6.84 -38.57 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.48 Total: 9.64 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.58 Total: -6.77 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.40 Total: -41.33 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: 0.14 Total: -21.21 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.73 -6.84 -38.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850501146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.775 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds