Wall clock time and date at job start Tue Mar 31 2020 18:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47532 * 2 1 4 4 H 1.09007 * 109.47012 * 305.00323 * 3 2 1 5 5 C 1.52996 * 109.47216 * 184.99951 * 3 2 1 6 6 N 1.46497 * 109.46897 * 65.00091 * 3 2 1 7 7 C 1.46495 * 120.00254 * 60.00330 * 6 3 2 8 8 C 1.52997 * 109.47267 * 95.64274 * 7 6 3 9 9 C 1.34780 * 119.99905 * 240.00061 * 6 3 2 10 10 O 1.21356 * 120.00445 * 4.58825 * 9 6 3 11 11 C 1.49361 * 119.99863 * 184.58519 * 9 6 3 12 12 O 1.21368 * 119.99836 * 5.32535 * 11 9 6 13 13 N 1.34780 * 119.99677 * 185.32324 * 11 9 6 14 14 C 1.39726 * 119.99356 * 174.43379 * 13 11 9 15 15 C 1.39028 * 120.03569 * 149.22788 * 14 13 11 16 16 C 1.38139 * 120.05968 * 179.74235 * 15 14 13 17 17 C 1.38178 * 120.14119 * 0.55775 * 16 15 14 18 18 C 1.38923 * 120.08719 * 359.69819 * 17 16 15 19 19 O 1.35745 * 120.03134 * 179.97438 * 18 17 16 20 20 C 1.34833 * 117.00365 * 5.33722 * 19 18 17 21 21 H 1.08001 * 119.99412 * 5.35408 * 20 19 18 22 22 C 1.38645 * 119.99865 * 185.35380 * 20 19 18 23 23 N 1.31560 * 120.00731 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99885 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47008 * 59.99931 * 24 22 20 26 26 H 1.48496 * 109.47321 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47328 * 300.00188 * 24 22 20 28 28 C 1.38763 * 119.93389 * 0.02562 * 18 17 16 29 29 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46910 * 300.00053 * 1 2 3 31 31 H 1.09003 * 109.47584 * 59.99578 * 1 2 3 32 32 H 1.09005 * 109.46910 * 239.99947 * 2 1 3 33 33 H 1.09000 * 109.46894 * 120.00208 * 2 1 3 34 34 H 1.08997 * 109.47164 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.47120 * 60.00516 * 5 3 2 36 36 H 1.08998 * 109.47166 * 300.00207 * 5 3 2 37 37 H 1.09006 * 109.47416 * 215.64648 * 7 6 3 38 38 H 1.09005 * 109.47192 * 335.64071 * 7 6 3 39 39 H 1.08996 * 109.46938 * 300.00019 * 8 7 6 40 40 H 1.08996 * 109.47307 * 60.00601 * 8 7 6 41 41 H 1.09008 * 109.47251 * 180.02562 * 8 7 6 42 42 H 0.96998 * 119.99750 * 354.43750 * 13 11 9 43 43 H 1.07999 * 119.96739 * 0.02562 * 15 14 13 44 44 H 1.07997 * 119.92962 * 180.27561 * 16 15 14 45 45 H 1.08004 * 119.95771 * 179.71921 * 17 16 15 46 46 H 0.96996 * 120.00819 * 180.02562 * 23 22 20 47 47 H 1.07993 * 120.06629 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 1.6526 2.0974 1.2518 7 6 2.1140 1.5589 2.5337 8 6 3.3746 2.3046 2.9760 9 6 0.8715 3.1955 1.2241 10 8 0.4209 3.5932 0.1699 11 6 0.5605 3.9228 2.4911 12 8 1.0876 3.5838 3.5304 13 7 -0.3054 4.9555 2.4800 14 6 -0.6857 5.5611 3.6805 15 6 -1.0092 6.9130 3.7060 16 6 -1.3904 7.5110 4.8915 17 6 -1.4402 6.7709 6.0573 18 6 -1.1131 5.4208 6.0397 19 8 -1.1619 4.6949 7.1857 20 6 -1.6410 5.3149 8.2831 21 1 -2.0445 6.3137 8.2061 22 6 -1.6156 4.6700 9.5102 23 7 -1.1237 3.4535 9.6041 24 14 -2.2787 5.5291 11.0306 25 1 -3.7125 5.8579 10.8277 26 1 -2.1373 4.6334 12.2066 27 1 -1.5127 6.7794 11.2664 28 6 -0.7353 4.8154 4.8496 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9282 2.4718 -0.1262 35 1 3.8532 0.9569 -1.0571 36 1 3.9994 0.9051 0.7161 37 1 1.3337 1.6875 3.2839 38 1 2.3395 0.4983 2.4222 39 1 4.1548 2.1759 2.2258 40 1 3.1491 3.3651 3.0876 41 1 3.7182 1.9035 3.9296 42 1 -0.6646 5.2783 1.6388 43 1 -0.9669 7.4951 2.7973 44 1 -1.6455 8.5602 4.9081 45 1 -1.7342 7.2425 6.9834 46 1 -1.1062 3.0022 10.4625 47 1 -0.4809 3.7659 4.8334 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850501146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:25 Heat of formation + Delta-G solvation = -79.315115 kcal Electronic energy + Delta-G solvation = -29255.427453 eV Core-core repulsion = 25210.960269 eV Total energy + Delta-G solvation = -4044.467185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.38791 -40.96234 -39.97776 -38.43562 -38.10809 -35.72928 -34.48175 -34.24402 -31.36492 -31.31238 -30.91636 -30.22364 -27.40371 -26.52505 -24.69202 -24.43128 -23.70520 -23.01959 -21.75664 -20.48487 -19.98341 -19.28387 -18.62213 -18.38849 -17.25043 -17.18968 -16.78138 -16.72614 -16.11652 -15.90714 -15.70389 -15.48050 -15.41329 -14.88741 -14.69488 -14.60349 -14.31008 -14.30685 -14.25559 -13.87453 -13.59468 -13.37260 -13.30377 -13.05727 -12.94070 -12.72667 -12.63066 -12.42425 -12.30203 -12.21573 -12.15765 -11.95023 -11.87601 -11.60244 -11.40443 -11.19429 -10.75421 -10.48984 -9.91335 -9.38325 -8.91024 -8.45793 -6.15091 -0.03321 0.63505 0.71253 1.15050 1.36051 1.47237 1.52686 2.00542 2.16803 2.30217 2.81771 3.07652 3.17424 3.54182 3.72598 4.00828 4.02013 4.10883 4.12468 4.34146 4.35864 4.38204 4.44805 4.49353 4.53493 4.60178 4.68950 4.70147 4.74964 4.86065 4.91577 4.95761 5.02393 5.07261 5.10848 5.16807 5.22978 5.28150 5.33715 5.35139 5.43154 5.44330 5.61148 5.71603 5.89007 6.02629 6.10737 6.16592 6.60538 6.83695 6.98012 7.78758 8.77335 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.002826 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.297113 B = 9906.865806 C =10888.446210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.126 3.874 4 H 0.093 0.907 5 C -0.157 4.157 6 N -0.564 5.564 7 C 0.100 3.900 8 C -0.158 4.158 9 C 0.515 3.485 10 O -0.538 6.538 11 C 0.490 3.510 12 O -0.502 6.502 13 N -0.631 5.631 14 C 0.180 3.820 15 C -0.205 4.205 16 C -0.046 4.046 17 C -0.252 4.252 18 C 0.131 3.869 19 O -0.230 6.230 20 C -0.414 4.414 21 H 0.106 0.894 22 C -0.024 4.024 23 N -0.921 5.921 24 Si 1.020 2.980 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.256 1.256 28 C -0.209 4.209 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.066 0.934 42 H 0.431 0.569 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.126 0.874 46 H 0.272 0.728 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 -2.139 -20.282 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C 0.025 3.975 4 H 0.111 0.889 5 C -0.215 4.215 6 N -0.296 5.296 7 C -0.021 4.021 8 C -0.216 4.216 9 C 0.297 3.703 10 O -0.416 6.416 11 C 0.273 3.727 12 O -0.376 6.376 13 N -0.278 5.278 14 C 0.086 3.914 15 C -0.225 4.225 16 C -0.064 4.064 17 C -0.272 4.272 18 C 0.080 3.920 19 O -0.137 6.137 20 C -0.490 4.490 21 H 0.123 0.877 22 C -0.221 4.221 23 N -0.559 5.559 24 Si 0.839 3.161 25 H -0.180 1.180 26 H -0.198 1.198 27 H -0.180 1.180 28 C -0.230 4.230 29 H 0.086 0.914 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.271 0.729 43 H 0.177 0.823 44 H 0.178 0.822 45 H 0.143 0.857 46 H 0.081 0.919 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.782 -2.650 -19.959 21.246 hybrid contribution -0.473 0.239 0.804 0.963 sum 6.309 -2.411 -19.155 20.311 Atomic orbital electron populations 1.21730 0.96433 1.01886 1.00827 1.21921 0.95668 0.94605 1.04373 1.21549 0.96740 0.94176 0.85042 0.88903 1.22193 0.92729 1.02508 1.04065 1.48034 1.46734 1.25368 1.09489 1.21905 0.97938 0.99062 0.83219 1.22151 0.97047 1.00526 1.01835 1.19732 0.80303 0.82298 0.87990 1.90718 1.52107 1.67152 1.31632 1.20645 0.80159 0.81791 0.90126 1.90836 1.49024 1.63946 1.33769 1.43008 1.43459 1.32140 1.09207 1.17289 0.97694 0.92101 0.84290 1.20870 1.09897 0.91502 1.00260 1.21017 0.94829 1.00298 0.90263 1.21373 1.11446 0.93543 1.00818 1.19590 0.93647 0.91552 0.87222 1.83961 1.74242 1.39667 1.15794 1.21838 1.40218 1.02124 0.84829 0.87700 1.26639 0.97096 0.96703 1.01665 1.70199 1.44912 1.13821 1.26966 0.84631 0.79144 0.77766 0.74560 1.17986 1.19791 1.18007 1.20045 1.11886 1.00257 0.90856 0.91449 0.95265 0.92953 0.87994 0.90575 0.93084 0.88925 0.91000 0.90783 0.87689 0.90838 0.94225 0.91486 0.72863 0.82289 0.82175 0.85662 0.91865 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.80 71.98 0.71 -1.86 16 2 C -0.13 -1.66 5.36 30.59 0.16 -1.50 16 3 C 0.13 2.08 2.63 44.99 0.12 2.20 16 4 H 0.09 1.77 6.91 -2.38 -0.02 1.75 16 5 C -0.16 -1.89 8.24 71.98 0.59 -1.30 16 6 N -0.56 -12.57 1.84 -799.51 -1.47 -14.04 16 7 C 0.10 2.26 4.92 86.38 0.43 2.68 16 8 C -0.16 -3.61 9.42 71.98 0.68 -2.93 16 9 C 0.51 14.20 7.69 87.24 0.67 14.87 16 10 O -0.54 -15.61 15.83 -3.27 -0.05 -15.66 16 11 C 0.49 15.78 7.36 87.24 0.64 16.43 16 12 O -0.50 -18.97 8.84 -3.30 -0.03 -19.00 16 13 N -0.63 -19.12 5.34 -304.88 -1.63 -20.75 16 14 C 0.18 6.56 6.33 38.20 0.24 6.80 16 15 C -0.20 -6.26 9.96 22.44 0.22 -6.04 16 16 C -0.05 -1.49 10.03 22.23 0.22 -1.27 16 17 C -0.25 -10.88 9.14 22.42 0.20 -10.67 16 18 C 0.13 6.77 6.64 22.56 0.15 6.92 16 19 O -0.23 -14.30 9.75 -22.72 -0.22 -14.52 16 20 C -0.41 -24.38 9.44 67.92 0.64 -23.74 16 21 H 0.11 5.57 5.28 -2.91 -0.02 5.56 16 22 C -0.02 -1.35 5.49 84.83 0.47 -0.89 16 23 N -0.92 -57.52 13.67 21.61 0.30 -57.22 16 24 Si 1.02 43.02 29.55 68.60 2.03 45.05 16 25 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 28 C -0.21 -9.74 8.61 22.52 0.19 -9.54 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.03 0.63 7.75 -2.38 -0.02 0.61 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.08 0.92 6.50 -2.39 -0.02 0.90 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.78 6.60 -2.39 -0.02 0.77 16 37 H 0.07 2.16 5.90 -2.38 -0.01 2.15 16 38 H 0.11 1.74 6.36 -2.38 -0.02 1.72 16 39 H 0.07 1.32 6.07 -2.39 -0.01 1.30 16 40 H 0.04 1.14 6.34 -2.39 -0.02 1.12 16 41 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.43 10.41 8.29 -92.71 -0.77 9.64 16 43 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 45 H 0.13 5.40 5.69 -2.91 -0.02 5.38 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.11 5.46 6.21 -2.91 -0.02 5.44 16 Total: -1.00 -76.64 378.39 5.51 -71.13 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.24 Total: 34.86 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 6.34 Total: -9.85 kcal Atomic # 7 Polarization: -89.21 SS G_CDS: -2.80 Total: -92.01 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -0.30 Total: -49.18 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -76.64 5.51 -71.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850501146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.186 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds