Wall clock time and date at job start Tue Mar 31 2020 17:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47045 * 2 1 4 4 H 1.08998 * 109.47478 * 304.99641 * 3 2 1 5 5 C 1.53002 * 109.47291 * 64.99835 * 3 2 1 6 6 C 1.53006 * 109.47207 * 184.99925 * 3 2 1 7 7 C 1.52999 * 109.47320 * 174.99926 * 6 3 2 8 8 N 1.46495 * 109.47222 * 180.02562 * 7 6 3 9 9 C 1.34773 * 120.00286 * 180.02562 * 8 7 6 10 10 O 1.21369 * 119.99923 * 359.97438 * 9 8 7 11 11 C 1.49346 * 120.00216 * 179.97438 * 9 8 7 12 12 O 1.21374 * 120.00266 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00032 * 179.97438 * 11 9 8 14 14 C 1.39728 * 120.00096 * 175.49776 * 13 11 9 15 15 C 1.39013 * 120.04190 * 214.86115 * 14 13 11 16 16 C 1.38148 * 120.06182 * 179.74712 * 15 14 13 17 17 C 1.38183 * 120.14176 * 0.55313 * 16 15 14 18 18 C 1.38916 * 120.07899 * 359.70153 * 17 16 15 19 19 O 1.35759 * 120.02730 * 179.97438 * 18 17 16 20 20 C 1.34830 * 117.00112 * 5.37056 * 19 18 17 21 21 H 1.08005 * 119.99489 * 354.96456 * 20 19 18 22 22 C 1.38650 * 120.00422 * 174.96157 * 20 19 18 23 23 N 1.31561 * 119.99417 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00224 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47204 * 60.00217 * 24 22 20 26 26 H 1.48496 * 109.46985 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46804 * 300.00203 * 24 22 20 28 28 C 1.38758 * 119.94434 * 0.02562 * 18 17 16 29 29 H 1.08996 * 109.47437 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47404 * 300.00023 * 1 2 3 31 31 H 1.09007 * 109.47191 * 60.00158 * 1 2 3 32 32 H 1.09001 * 109.47187 * 239.99954 * 2 1 3 33 33 H 1.08994 * 109.47365 * 120.00074 * 2 1 3 34 34 H 1.09001 * 109.46762 * 59.99975 * 5 3 2 35 35 H 1.08996 * 109.47307 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47038 * 300.00358 * 5 3 2 37 37 H 1.09001 * 109.46607 * 54.99778 * 6 3 2 38 38 H 1.08997 * 109.46937 * 295.00233 * 6 3 2 39 39 H 1.09005 * 109.47157 * 59.99885 * 7 6 3 40 40 H 1.09000 * 109.47127 * 300.00505 * 7 6 3 41 41 H 0.97003 * 120.00014 * 359.97438 * 8 7 6 42 42 H 0.96997 * 119.99820 * 355.49959 * 13 11 9 43 43 H 1.08005 * 119.97082 * 0.02562 * 15 14 13 44 44 H 1.08001 * 119.92882 * 180.28292 * 16 15 14 45 45 H 1.07992 * 119.95641 * 179.72278 * 17 16 15 46 46 H 0.96998 * 119.99426 * 179.97438 * 23 22 20 47 47 H 1.07996 * 120.07524 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 6 4.0645 2.8850 -0.2511 8 7 5.5244 2.8867 -0.3721 9 6 6.1891 4.0527 -0.4946 10 8 5.5781 5.1014 -0.5052 11 6 7.6775 4.0545 -0.6174 12 8 8.2886 3.0059 -0.6073 13 7 8.3422 5.2206 -0.7404 14 6 9.7393 5.2297 -0.7606 15 6 10.4368 6.2838 -0.1820 16 6 11.8182 6.2906 -0.1971 17 6 12.5107 5.2561 -0.7970 18 6 11.8195 4.2024 -1.3816 19 8 12.5009 3.1869 -1.9712 20 6 13.8443 3.2043 -1.8580 21 1 14.3358 4.0434 -1.3880 22 6 14.5949 2.1451 -2.3449 23 7 13.9961 1.1232 -2.9178 24 14 16.4562 2.1695 -2.1888 25 1 16.8316 2.2455 -0.7541 26 1 17.0190 0.9306 -2.7833 27 1 16.9975 3.3522 -2.9055 28 6 10.4321 4.1893 -1.3635 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0698 1.5875 2.1491 35 1 1.9988 3.1541 1.3075 36 1 0.5488 2.1252 1.3969 37 1 3.8570 0.8800 -1.0113 38 1 4.0029 0.9836 0.7596 39 1 3.7722 3.4494 0.6345 40 1 3.6263 3.3458 -1.1365 41 1 6.0128 2.0487 -0.3633 42 1 7.8507 6.0534 -0.8150 43 1 9.8984 7.0960 0.2837 44 1 12.3580 7.1083 0.2570 45 1 13.5905 5.2667 -0.8110 46 1 14.5212 0.3824 -3.2588 47 1 9.8927 3.3710 -1.8170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850590641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:34 Heat of formation + Delta-G solvation = -86.016559 kcal Electronic energy + Delta-G solvation = -27350.321225 eV Core-core repulsion = 23305.563444 eV Total energy + Delta-G solvation = -4044.757781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87859 -39.37041 -38.43180 -37.75559 -36.62485 -35.19755 -34.03999 -32.26408 -31.47996 -29.68274 -28.78560 -28.43743 -26.12781 -25.34392 -24.37939 -22.47064 -21.90195 -21.32596 -20.60317 -19.98414 -18.69754 -18.11004 -17.09017 -16.81651 -16.28984 -15.84809 -15.65466 -15.34762 -15.10030 -14.97459 -14.59513 -14.30873 -14.18686 -14.04126 -13.72715 -13.60140 -13.50635 -13.04933 -12.85511 -12.54916 -12.39598 -12.24509 -12.09880 -11.84762 -11.69857 -11.57249 -11.51029 -11.18947 -11.06789 -11.01647 -10.95112 -10.89219 -10.77379 -10.49122 -9.85828 -9.65976 -9.45565 -9.21420 -8.82941 -7.79443 -7.23123 -6.43594 -4.02899 1.26123 2.09034 2.30358 2.36060 3.13819 3.14683 3.18052 3.24034 3.57393 3.97804 4.23491 4.36314 4.40063 4.50100 4.56796 4.76614 4.83413 5.02673 5.08537 5.10391 5.13931 5.21379 5.28756 5.34139 5.48770 5.57333 5.59339 5.60208 5.65225 5.66817 5.73977 5.79577 5.96583 5.98738 6.02660 6.03862 6.13577 6.31089 6.55670 6.68035 6.95114 6.99443 7.04497 7.31428 7.41876 7.46766 7.66559 7.75722 8.00581 8.07353 9.01102 9.71176 10.74064 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.001977 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.202069 B =14156.056141 C =15699.156112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.074 0.926 5 C -0.154 4.154 6 C -0.131 4.131 7 C 0.116 3.884 8 N -0.701 5.701 9 C 0.513 3.487 10 O -0.523 6.523 11 C 0.498 3.502 12 O -0.490 6.490 13 N -0.637 5.637 14 C 0.167 3.833 15 C -0.229 4.229 16 C -0.058 4.058 17 C -0.241 4.241 18 C 0.166 3.834 19 O -0.172 6.172 20 C -0.393 4.393 21 H 0.093 0.907 22 C 0.039 3.961 23 N -0.860 5.860 24 Si 0.942 3.058 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.270 1.270 28 C -0.185 4.185 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.415 0.585 42 H 0.418 0.582 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.271 0.729 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.199 2.398 6.525 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.212 4.212 6 C -0.169 4.169 7 C -0.007 4.007 8 N -0.355 5.355 9 C 0.293 3.707 10 O -0.399 6.399 11 C 0.279 3.721 12 O -0.363 6.363 13 N -0.283 5.283 14 C 0.074 3.926 15 C -0.250 4.250 16 C -0.077 4.077 17 C -0.261 4.261 18 C 0.111 3.889 19 O -0.075 6.075 20 C -0.469 4.469 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.494 5.494 24 Si 0.767 3.233 25 H -0.195 1.195 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.206 4.206 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.252 0.748 42 H 0.255 0.745 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.081 0.919 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.260 1.932 6.288 23.211 hybrid contribution 0.937 0.078 0.099 0.945 sum -21.323 2.010 6.387 22.350 Atomic orbital electron populations 1.21822 0.95806 1.01607 1.01934 1.21573 0.95992 0.95967 1.02252 1.21090 0.94022 0.96698 0.98907 0.90762 1.21982 1.01541 1.00674 0.96961 1.21901 0.96130 0.95498 1.03340 1.21581 0.78472 0.97895 1.02765 1.45779 1.08199 1.09213 1.72319 1.20092 0.88264 0.84496 0.77815 1.90755 1.69395 1.31127 1.48586 1.20120 0.88153 0.84852 0.78990 1.90862 1.68545 1.30806 1.46042 1.42998 1.05694 1.09662 1.69958 1.17182 0.80157 0.96616 0.98611 1.20308 0.94329 1.00747 1.09649 1.20521 0.92985 0.97104 0.97042 1.21217 1.00823 0.96652 1.07414 1.19103 0.91045 0.88349 0.90421 1.83989 1.20762 1.39841 1.62924 1.21303 0.78254 1.06439 1.40878 0.88991 1.25309 1.00543 0.94460 0.96216 1.70044 1.36403 1.07508 1.35490 0.85768 0.80489 0.78140 0.78945 1.19479 1.20294 1.19482 1.20152 0.91762 1.01530 1.07146 0.92833 0.92464 0.92756 0.91827 0.91842 0.92526 0.92311 0.92316 0.90760 0.90795 0.90660 0.90926 0.74827 0.74533 0.87064 0.86811 0.85309 0.91943 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.67 37.16 0.36 -0.41 16 2 C -0.12 -0.64 5.40 -26.73 -0.14 -0.79 16 3 C -0.09 -0.49 2.39 -90.62 -0.22 -0.71 16 4 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 5 C -0.15 -0.85 8.70 37.16 0.32 -0.53 16 6 C -0.13 -0.81 4.80 -26.73 -0.13 -0.94 16 7 C 0.12 0.95 5.43 -4.05 -0.02 0.93 16 8 N -0.70 -7.42 5.55 -60.77 -0.34 -7.76 16 9 C 0.51 6.89 7.89 -11.64 -0.09 6.80 16 10 O -0.52 -7.67 16.48 5.48 0.09 -7.58 16 11 C 0.50 7.94 7.73 -11.63 -0.09 7.85 16 12 O -0.49 -9.30 13.91 5.48 0.08 -9.22 16 13 N -0.64 -9.96 5.32 -10.31 -0.05 -10.01 16 14 C 0.17 3.15 6.29 -83.77 -0.53 2.62 16 15 C -0.23 -3.95 9.96 -39.33 -0.39 -4.34 16 16 C -0.06 -1.04 10.03 -39.63 -0.40 -1.44 16 17 C -0.24 -5.24 9.17 -39.35 -0.36 -5.60 16 18 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 19 O -0.17 -5.02 9.76 0.02 0.00 -5.02 16 20 C -0.39 -11.04 9.49 30.88 0.29 -10.75 16 21 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 22 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 23 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 24 Si 0.94 20.55 29.55 -169.99 -5.02 15.53 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 28 C -0.18 -4.19 8.64 -39.19 -0.34 -4.53 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.16 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 36 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.63 6.56 -51.93 -0.34 0.29 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.42 4.11 7.94 -40.82 -0.32 3.79 16 42 H 0.42 5.38 8.30 -40.82 -0.34 5.04 16 43 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.13 3.20 6.22 -52.49 -0.33 2.87 16 LS Contribution 390.53 15.07 5.89 5.89 Total: -1.00 -33.07 390.53 -7.40 -40.47 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.71 Total: 9.39 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.09 Total: -6.97 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.37 Total: -42.47 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.17 Total: -21.82 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.07 -7.40 -40.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850590641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.550 kcal (2) G-P(sol) polarization free energy of solvation -33.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds