Wall clock time and date at job start Tue Mar 31 2020 17:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47045 * 2 1 4 4 H 1.08998 * 109.47478 * 304.99641 * 3 2 1 5 5 C 1.53002 * 109.47291 * 64.99835 * 3 2 1 6 6 C 1.53006 * 109.47207 * 184.99925 * 3 2 1 7 7 C 1.52999 * 109.47320 * 174.99926 * 6 3 2 8 8 N 1.46495 * 109.47222 * 180.02562 * 7 6 3 9 9 C 1.34773 * 120.00286 * 180.02562 * 8 7 6 10 10 O 1.21369 * 119.99923 * 359.97438 * 9 8 7 11 11 C 1.49346 * 120.00216 * 179.97438 * 9 8 7 12 12 O 1.21374 * 120.00266 * 0.02562 * 11 9 8 13 13 N 1.34781 * 120.00032 * 179.97438 * 11 9 8 14 14 C 1.39728 * 120.00096 * 175.49776 * 13 11 9 15 15 C 1.39013 * 120.04190 * 214.86115 * 14 13 11 16 16 C 1.38148 * 120.06182 * 179.74712 * 15 14 13 17 17 C 1.38183 * 120.14176 * 0.55313 * 16 15 14 18 18 C 1.38916 * 120.07899 * 359.70153 * 17 16 15 19 19 O 1.35759 * 120.02730 * 179.97438 * 18 17 16 20 20 C 1.34830 * 117.00112 * 5.37056 * 19 18 17 21 21 H 1.08005 * 119.99489 * 354.96456 * 20 19 18 22 22 C 1.38650 * 120.00422 * 174.96157 * 20 19 18 23 23 N 1.31561 * 119.99417 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00224 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47204 * 60.00217 * 24 22 20 26 26 H 1.48496 * 109.46985 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46804 * 300.00203 * 24 22 20 28 28 C 1.38758 * 119.94434 * 0.02562 * 18 17 16 29 29 H 1.08996 * 109.47437 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47404 * 300.00023 * 1 2 3 31 31 H 1.09007 * 109.47191 * 60.00158 * 1 2 3 32 32 H 1.09001 * 109.47187 * 239.99954 * 2 1 3 33 33 H 1.08994 * 109.47365 * 120.00074 * 2 1 3 34 34 H 1.09001 * 109.46762 * 59.99975 * 5 3 2 35 35 H 1.08996 * 109.47307 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.47038 * 300.00358 * 5 3 2 37 37 H 1.09001 * 109.46607 * 54.99778 * 6 3 2 38 38 H 1.08997 * 109.46937 * 295.00233 * 6 3 2 39 39 H 1.09005 * 109.47157 * 59.99885 * 7 6 3 40 40 H 1.09000 * 109.47127 * 300.00505 * 7 6 3 41 41 H 0.97003 * 120.00014 * 359.97438 * 8 7 6 42 42 H 0.96997 * 119.99820 * 355.49959 * 13 11 9 43 43 H 1.08005 * 119.97082 * 0.02562 * 15 14 13 44 44 H 1.08001 * 119.92882 * 180.28292 * 16 15 14 45 45 H 1.07992 * 119.95641 * 179.72278 * 17 16 15 46 46 H 0.96998 * 119.99426 * 179.97438 * 23 22 20 47 47 H 1.07996 * 120.07524 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6351 2.1266 1.3073 6 6 3.5648 1.4444 -0.1257 7 6 4.0645 2.8850 -0.2511 8 7 5.5244 2.8867 -0.3721 9 6 6.1891 4.0527 -0.4946 10 8 5.5781 5.1014 -0.5052 11 6 7.6775 4.0545 -0.6174 12 8 8.2886 3.0059 -0.6073 13 7 8.3422 5.2206 -0.7404 14 6 9.7393 5.2297 -0.7606 15 6 10.4368 6.2838 -0.1820 16 6 11.8182 6.2906 -0.1971 17 6 12.5107 5.2561 -0.7970 18 6 11.8195 4.2024 -1.3816 19 8 12.5009 3.1869 -1.9712 20 6 13.8443 3.2043 -1.8580 21 1 14.3358 4.0434 -1.3880 22 6 14.5949 2.1451 -2.3449 23 7 13.9961 1.1232 -2.9178 24 14 16.4562 2.1695 -2.1888 25 1 16.8316 2.2455 -0.7541 26 1 17.0190 0.9306 -2.7833 27 1 16.9975 3.3522 -2.9055 28 6 10.4321 4.1893 -1.3635 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0698 1.5875 2.1491 35 1 1.9988 3.1541 1.3075 36 1 0.5488 2.1252 1.3969 37 1 3.8570 0.8800 -1.0113 38 1 4.0029 0.9836 0.7596 39 1 3.7722 3.4494 0.6345 40 1 3.6263 3.3458 -1.1365 41 1 6.0128 2.0487 -0.3633 42 1 7.8507 6.0534 -0.8150 43 1 9.8984 7.0960 0.2837 44 1 12.3580 7.1083 0.2570 45 1 13.5905 5.2667 -0.8110 46 1 14.5212 0.3824 -3.2588 47 1 9.8927 3.3710 -1.8170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850590641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:34 Heat of formation + Delta-G solvation = -108.887706 kcal Electronic energy + Delta-G solvation = -27351.312992 eV Core-core repulsion = 23305.563444 eV Total energy + Delta-G solvation = -4045.749548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.16311 -40.81997 -39.88915 -38.39618 -38.27937 -36.21515 -35.36590 -34.25641 -32.09439 -31.31218 -30.29308 -29.14133 -27.41281 -26.82286 -25.40500 -23.70238 -23.06526 -22.66191 -21.62328 -20.75974 -20.13395 -19.66372 -18.84362 -18.00626 -17.31766 -16.97552 -16.79367 -16.76943 -16.45111 -16.01435 -15.88366 -15.75448 -15.48820 -15.17956 -15.04942 -14.60486 -14.40119 -14.30181 -14.27438 -13.61405 -13.57803 -13.24594 -13.18755 -12.83443 -12.81413 -12.71611 -12.66677 -12.56856 -12.37084 -12.15728 -12.02828 -11.60963 -11.42314 -11.41018 -11.35744 -11.29002 -10.76725 -10.70439 -10.35472 -9.42849 -8.94441 -8.45813 -6.15323 -0.04142 0.59896 0.69109 1.16147 1.36220 1.47653 1.53186 1.99485 2.18221 2.47760 2.81137 3.15479 3.22295 3.55286 3.68839 3.90732 3.99617 4.11516 4.22207 4.33472 4.34351 4.37316 4.52019 4.56279 4.59324 4.68598 4.69489 4.74449 4.85511 4.91365 4.95349 5.04771 5.10686 5.12589 5.18545 5.20316 5.25700 5.26870 5.28852 5.35755 5.54535 5.56884 5.60615 5.70951 5.82552 6.02800 6.12328 6.22669 6.62606 6.80971 6.97801 7.78672 8.77386 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.001977 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.202069 B =14156.056141 C =15699.156112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.085 4.085 4 H 0.076 0.924 5 C -0.154 4.154 6 C -0.125 4.125 7 C 0.115 3.885 8 N -0.689 5.689 9 C 0.521 3.479 10 O -0.533 6.533 11 C 0.497 3.503 12 O -0.525 6.525 13 N -0.627 5.627 14 C 0.173 3.827 15 C -0.199 4.199 16 C -0.047 4.047 17 C -0.249 4.249 18 C 0.127 3.873 19 O -0.232 6.232 20 C -0.415 4.415 21 H 0.107 0.893 22 C -0.026 4.026 23 N -0.922 5.922 24 Si 1.022 2.978 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.254 1.254 28 C -0.208 4.208 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.419 0.581 42 H 0.434 0.566 43 H 0.162 0.838 44 H 0.163 0.837 45 H 0.127 0.873 46 H 0.272 0.728 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.019 5.067 8.353 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.104 4.104 4 H 0.094 0.906 5 C -0.211 4.211 6 C -0.162 4.162 7 C -0.007 4.007 8 N -0.341 5.341 9 C 0.301 3.699 10 O -0.411 6.411 11 C 0.279 3.721 12 O -0.400 6.400 13 N -0.275 5.275 14 C 0.079 3.921 15 C -0.220 4.220 16 C -0.065 4.065 17 C -0.268 4.268 18 C 0.076 3.924 19 O -0.138 6.138 20 C -0.490 4.490 21 H 0.125 0.875 22 C -0.223 4.223 23 N -0.560 5.560 24 Si 0.841 3.159 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.178 1.178 28 C -0.229 4.229 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.256 0.744 42 H 0.275 0.725 43 H 0.180 0.820 44 H 0.180 0.820 45 H 0.145 0.855 46 H 0.081 0.919 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.157 4.656 8.143 24.984 hybrid contribution 0.872 -0.555 -0.347 1.090 sum -22.285 4.101 7.796 23.963 Atomic orbital electron populations 1.21820 0.95451 1.01793 1.02086 1.21565 0.96305 0.95715 1.02173 1.21063 0.93298 0.96926 0.99075 0.90607 1.21978 1.01924 1.00402 0.96801 1.21870 0.96647 0.94115 1.03609 1.21772 0.76636 0.99335 1.02963 1.45866 1.09275 1.08477 1.70516 1.19556 0.86767 0.85183 0.78437 1.90756 1.68993 1.31522 1.49783 1.20685 0.89419 0.84265 0.77744 1.90867 1.69598 1.32104 1.47414 1.42936 1.04490 1.10552 1.69483 1.17312 0.81664 0.95811 0.97303 1.20917 0.94288 1.00393 1.06356 1.21047 0.93533 0.96735 0.95196 1.21391 1.00997 0.96885 1.07555 1.19626 0.91943 0.88903 0.91933 1.83957 1.21435 1.42482 1.65948 1.21871 0.78566 1.07331 1.41272 0.87528 1.26687 1.06397 0.93691 0.95542 1.70212 1.38726 1.08881 1.38208 0.84599 0.73005 0.78653 0.79631 1.18042 1.19855 1.17835 1.20167 0.91353 1.02588 1.08787 0.92674 0.92201 0.92708 0.91967 0.91898 0.92592 0.92601 0.91780 0.90556 0.90506 0.90298 0.90772 0.74431 0.72528 0.82023 0.81983 0.85534 0.91881 0.87412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 71.98 0.70 -0.65 16 2 C -0.12 -1.14 5.40 30.59 0.17 -0.98 16 3 C -0.08 -0.82 2.39 -10.79 -0.03 -0.85 16 4 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 5 C -0.15 -1.46 8.70 71.98 0.63 -0.84 16 6 C -0.12 -1.39 4.80 30.60 0.15 -1.24 16 7 C 0.11 1.72 5.43 86.38 0.47 2.19 16 8 N -0.69 -13.89 5.55 -464.52 -2.58 -16.47 16 9 C 0.52 13.39 7.89 87.24 0.69 14.07 16 10 O -0.53 -14.61 16.48 -3.31 -0.05 -14.67 16 11 C 0.50 15.63 7.73 87.24 0.67 16.30 16 12 O -0.52 -20.55 13.91 -3.32 -0.05 -20.60 16 13 N -0.63 -18.49 5.32 -304.89 -1.62 -20.11 16 14 C 0.17 6.25 6.29 38.20 0.24 6.49 16 15 C -0.20 -5.96 9.96 22.43 0.22 -5.74 16 16 C -0.05 -1.50 10.03 22.24 0.22 -1.28 16 17 C -0.25 -10.66 9.17 22.42 0.21 -10.45 16 18 C 0.13 6.59 6.64 22.56 0.15 6.74 16 19 O -0.23 -14.49 9.76 -22.84 -0.22 -14.71 16 20 C -0.41 -24.49 9.49 67.92 0.64 -23.85 16 21 H 0.11 5.65 5.20 -2.91 -0.02 5.64 16 22 C -0.03 -1.50 5.49 84.83 0.47 -1.03 16 23 N -0.92 -58.00 13.67 21.61 0.30 -57.71 16 24 Si 1.02 43.15 29.55 68.60 2.03 45.18 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 27 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 28 C -0.21 -9.76 8.64 22.52 0.19 -9.56 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.49 6.56 -2.39 -0.02 0.47 16 31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.05 0.56 6.56 -2.39 -0.02 0.55 16 36 H 0.06 0.54 6.56 -2.39 -0.02 0.53 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.08 1.18 6.56 -2.38 -0.02 1.17 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.42 8.11 7.94 -92.71 -0.74 7.37 16 42 H 0.43 9.88 8.30 -92.71 -0.77 9.11 16 43 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 44 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 45 H 0.13 5.40 5.63 -2.91 -0.02 5.38 16 46 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 47 H 0.11 5.56 6.22 -2.91 -0.02 5.54 16 Total: -1.00 -78.19 390.53 3.10 -75.10 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -0.49 Total: 34.66 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 5.79 Total: -10.66 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -3.90 Total: -94.29 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.32 Total: -49.98 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -78.19 3.10 -75.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850590641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.793 kcal (2) G-P(sol) polarization free energy of solvation -78.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds