Wall clock time and date at job start Tue Mar 31 2020 17:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47330 * 2 1 4 4 H 1.09000 * 109.46930 * 54.99868 * 3 2 1 5 5 C 1.52993 * 109.46766 * 295.00197 * 3 2 1 6 6 C 1.52997 * 109.47094 * 174.99785 * 3 2 1 7 7 C 1.52999 * 109.46842 * 184.99764 * 6 3 2 8 8 N 1.46504 * 109.46889 * 180.02562 * 7 6 3 9 9 C 1.34777 * 119.99684 * 180.02562 * 8 7 6 10 10 O 1.21356 * 120.00404 * 359.97438 * 9 8 7 11 11 C 1.49355 * 120.00003 * 180.02562 * 9 8 7 12 12 O 1.21378 * 119.99906 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00074 * 179.97438 * 11 9 8 14 14 C 1.39726 * 119.99530 * 174.77827 * 13 11 9 15 15 C 1.39017 * 120.04277 * 326.28912 * 14 13 11 16 16 C 1.38145 * 120.05785 * 180.02562 * 15 14 13 17 17 C 1.38183 * 120.14532 * 359.70098 * 16 15 14 18 18 C 1.38917 * 120.08080 * 0.55652 * 17 16 15 19 19 O 1.35751 * 120.03230 * 179.74537 * 18 17 16 20 20 C 1.34827 * 117.00300 * 173.82204 * 19 18 17 21 21 H 1.08001 * 119.99789 * 354.59330 * 20 19 18 22 22 C 1.38648 * 119.99917 * 174.60123 * 20 19 18 23 23 N 1.31555 * 120.00195 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99750 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47309 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47198 * 119.99796 * 24 22 20 27 27 H 1.48501 * 109.47049 * 239.99418 * 24 22 20 28 28 C 1.38756 * 119.93875 * 359.46536 * 18 17 16 29 29 H 1.09000 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47441 * 300.00132 * 1 2 3 31 31 H 1.08997 * 109.47305 * 59.99903 * 1 2 3 32 32 H 1.08998 * 109.47406 * 239.99533 * 2 1 3 33 33 H 1.09004 * 109.46987 * 119.99913 * 2 1 3 34 34 H 1.09001 * 109.47262 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47128 * 299.99550 * 5 3 2 36 36 H 1.09002 * 109.47940 * 59.99881 * 5 3 2 37 37 H 1.09005 * 109.46918 * 65.00196 * 6 3 2 38 38 H 1.08993 * 109.47236 * 305.00253 * 6 3 2 39 39 H 1.09005 * 109.47011 * 60.00489 * 7 6 3 40 40 H 1.08993 * 109.47604 * 300.00264 * 7 6 3 41 41 H 0.96991 * 120.00125 * 359.97438 * 8 7 6 42 42 H 0.96997 * 119.99813 * 354.78106 * 13 11 9 43 43 H 1.08000 * 119.97223 * 0.02562 * 15 14 13 44 44 H 1.07998 * 119.92611 * 179.97438 * 16 15 14 45 45 H 1.07994 * 119.95482 * 180.29871 * 17 16 15 46 46 H 0.96997 * 119.99824 * 180.02562 * 23 22 20 47 47 H 1.08000 * 120.07290 * 180.22890 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 4.0644 2.8850 0.2511 8 7 5.5246 2.8867 0.3709 9 6 6.1891 4.0527 0.4942 10 8 5.5782 5.1012 0.5055 11 6 7.6777 4.0546 0.6158 12 8 8.2889 3.0060 0.6040 13 7 8.3424 5.2207 0.7386 14 6 9.7217 5.2184 0.9617 15 6 10.3026 4.2077 1.7191 16 6 11.6662 4.2054 1.9403 17 6 12.4577 5.2035 1.4049 18 6 11.8828 6.2193 0.6516 19 8 12.6607 7.2022 0.1304 20 6 12.0617 8.0841 -0.6949 21 1 11.0310 7.9395 -0.9835 22 6 12.7688 9.1766 -1.1732 23 7 14.0241 9.3530 -0.8214 24 14 11.9386 10.3989 -2.3160 25 1 10.5350 9.9776 -2.5562 26 1 11.9515 11.7469 -1.6929 27 1 12.6695 10.4439 -3.6079 28 6 10.5135 6.2252 0.4276 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9982 3.1543 -1.3072 35 1 2.0698 1.5875 -2.1491 36 1 0.5489 2.1253 -1.3970 37 1 4.0029 0.9835 -0.7596 38 1 3.8570 0.8800 1.0113 39 1 3.6263 3.3458 1.1365 40 1 3.7723 3.4493 -0.6344 41 1 6.0129 2.0487 0.3623 42 1 7.8632 6.0614 0.6721 43 1 9.6872 3.4235 2.1349 44 1 12.1151 3.4194 2.5293 45 1 13.5241 5.1960 1.5757 46 1 14.5187 10.1175 -1.1557 47 1 10.0648 7.0119 -0.1608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850590642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:37 Heat of formation + Delta-G solvation = -88.585783 kcal Electronic energy + Delta-G solvation = -27311.737248 eV Core-core repulsion = 23266.868057 eV Total energy + Delta-G solvation = -4044.869191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.93215 -39.41664 -38.49548 -37.81314 -36.56093 -35.27097 -34.19939 -32.26935 -31.53745 -29.58192 -28.85779 -28.50406 -26.20142 -25.37487 -24.47438 -22.43184 -21.90196 -21.52407 -20.57114 -19.97241 -18.80984 -18.03127 -17.33140 -16.79575 -16.33038 -15.88114 -15.69821 -15.46841 -15.12949 -14.93433 -14.67778 -14.32042 -14.20087 -14.03790 -13.77387 -13.71515 -13.53502 -13.07501 -13.03755 -12.43814 -12.43107 -12.29780 -12.15555 -11.92738 -11.76657 -11.62672 -11.56459 -11.19028 -11.10087 -11.02767 -10.98184 -10.94226 -10.78016 -10.44080 -9.98070 -9.61337 -9.51187 -9.46289 -8.84111 -7.83599 -7.23967 -6.47791 -4.07560 1.18294 2.06751 2.24933 2.36376 3.10542 3.12861 3.18219 3.18668 3.54834 3.94491 4.17711 4.32220 4.34253 4.45163 4.53537 4.70689 4.77732 4.98006 5.03041 5.07459 5.08902 5.16682 5.22029 5.28744 5.43927 5.51459 5.55075 5.60081 5.61309 5.61330 5.68614 5.89823 5.91007 5.93095 5.95817 5.98102 6.13174 6.17611 6.52387 6.69780 6.85828 6.95847 7.07863 7.22009 7.35916 7.44329 7.65363 7.71725 7.95487 8.00864 8.97742 9.66304 10.70009 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.001951 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.403960 B =14349.838203 C =15703.218822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.074 0.926 5 C -0.155 4.155 6 C -0.130 4.130 7 C 0.115 3.885 8 N -0.702 5.702 9 C 0.510 3.490 10 O -0.518 6.518 11 C 0.503 3.497 12 O -0.502 6.502 13 N -0.636 5.636 14 C 0.173 3.827 15 C -0.204 4.204 16 C -0.063 4.063 17 C -0.195 4.195 18 C 0.168 3.832 19 O -0.174 6.174 20 C -0.393 4.393 21 H 0.092 0.908 22 C 0.040 3.960 23 N -0.860 5.860 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.276 1.276 28 C -0.250 4.250 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.413 0.587 42 H 0.419 0.581 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.270 0.730 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.297 -15.760 1.998 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.093 0.907 5 C -0.212 4.212 6 C -0.167 4.167 7 C -0.008 4.008 8 N -0.356 5.356 9 C 0.291 3.709 10 O -0.393 6.393 11 C 0.284 3.716 12 O -0.376 6.376 13 N -0.281 5.281 14 C 0.080 3.920 15 C -0.225 4.225 16 C -0.082 4.082 17 C -0.215 4.215 18 C 0.113 3.887 19 O -0.077 6.077 20 C -0.469 4.469 21 H 0.109 0.891 22 C -0.164 4.164 23 N -0.495 5.495 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.271 4.271 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.250 0.750 42 H 0.256 0.744 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.080 0.920 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.932 -15.526 1.971 27.764 hybrid contribution -0.504 0.695 -0.654 1.079 sum -23.436 -14.831 1.317 27.766 Atomic orbital electron populations 1.21825 0.95773 1.01612 1.01997 1.21571 0.96036 0.95953 1.02163 1.21093 0.93987 0.96694 0.98977 0.90743 1.21984 1.01604 1.00726 0.96901 1.21888 0.96186 0.95476 1.03187 1.21590 0.78455 0.97877 1.02872 1.45754 1.08173 1.09086 1.72610 1.20106 0.88320 0.84532 0.77965 1.90779 1.69346 1.31106 1.48062 1.20060 0.88088 0.84744 0.78666 1.90785 1.68831 1.30970 1.47036 1.43146 1.07566 1.09179 1.68238 1.17400 0.80613 0.97054 0.96901 1.20521 0.95395 1.01257 1.05327 1.20524 0.92752 0.96954 0.97934 1.20291 1.00058 0.96037 1.05090 1.19071 0.88905 0.89341 0.91351 1.84020 1.34978 1.34091 1.54638 1.21338 0.98198 1.03924 1.23428 0.89107 1.25281 0.95755 0.97208 0.98168 1.70043 1.08247 1.28889 1.42325 0.85659 0.79058 0.79616 0.79180 1.19095 1.20093 1.20116 1.20849 0.93697 1.03133 1.09426 0.92833 0.92740 0.92418 0.91861 0.91898 0.92258 0.92513 0.92281 0.90836 0.90879 0.90909 0.90600 0.75023 0.74399 0.86327 0.86397 0.86188 0.92013 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.67 37.15 0.36 -0.33 16 2 C -0.12 -0.55 5.40 -26.73 -0.14 -0.70 16 3 C -0.09 -0.44 2.39 -90.62 -0.22 -0.65 16 4 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 5 C -0.16 -0.80 8.70 37.15 0.32 -0.48 16 6 C -0.13 -0.69 4.80 -26.73 -0.13 -0.82 16 7 C 0.11 0.88 5.43 -4.04 -0.02 0.86 16 8 N -0.70 -6.79 5.55 -60.76 -0.34 -7.13 16 9 C 0.51 6.64 7.89 -11.63 -0.09 6.55 16 10 O -0.52 -7.73 16.48 5.49 0.09 -7.64 16 11 C 0.50 7.61 7.62 -11.63 -0.09 7.53 16 12 O -0.50 -8.37 14.18 5.47 0.08 -8.30 16 13 N -0.64 -10.25 5.32 -10.31 -0.05 -10.30 16 14 C 0.17 3.31 6.27 -83.77 -0.52 2.79 16 15 C -0.20 -3.80 8.65 -39.33 -0.34 -4.14 16 16 C -0.06 -1.14 10.03 -39.64 -0.40 -1.54 16 17 C -0.20 -4.09 9.99 -39.35 -0.39 -4.48 16 18 C 0.17 4.02 6.64 -39.14 -0.26 3.76 16 19 O -0.17 -4.90 9.76 0.05 0.00 -4.90 16 20 C -0.39 -10.84 9.44 30.88 0.29 -10.55 16 21 H 0.09 2.33 5.30 -52.49 -0.28 2.05 16 22 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 23 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 24 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 28 C -0.25 -5.40 9.05 -39.19 -0.35 -5.75 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.25 6.56 -51.93 -0.34 -0.09 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.28 6.57 -51.93 -0.34 -0.06 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.62 6.57 -51.93 -0.34 0.28 16 41 H 0.41 3.49 7.94 -40.82 -0.32 3.17 16 42 H 0.42 6.06 8.30 -40.82 -0.34 5.72 16 43 H 0.12 2.09 6.43 -52.49 -0.34 1.76 16 44 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 45 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 46 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.13 2.83 5.71 -52.49 -0.30 2.53 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -32.14 390.93 -7.41 -39.55 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.73 Total: 8.63 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.08 Total: -6.97 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.37 Total: -41.65 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.17 Total: -20.84 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.14 -7.41 -39.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850590642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.033 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds