Wall clock time and date at job start Tue Mar 31 2020 17:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.47330 * 2 1 4 4 H 1.09000 * 109.46930 * 54.99868 * 3 2 1 5 5 C 1.52993 * 109.46766 * 295.00197 * 3 2 1 6 6 C 1.52997 * 109.47094 * 174.99785 * 3 2 1 7 7 C 1.52999 * 109.46842 * 184.99764 * 6 3 2 8 8 N 1.46504 * 109.46889 * 180.02562 * 7 6 3 9 9 C 1.34777 * 119.99684 * 180.02562 * 8 7 6 10 10 O 1.21356 * 120.00404 * 359.97438 * 9 8 7 11 11 C 1.49355 * 120.00003 * 180.02562 * 9 8 7 12 12 O 1.21378 * 119.99906 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00074 * 179.97438 * 11 9 8 14 14 C 1.39726 * 119.99530 * 174.77827 * 13 11 9 15 15 C 1.39017 * 120.04277 * 326.28912 * 14 13 11 16 16 C 1.38145 * 120.05785 * 180.02562 * 15 14 13 17 17 C 1.38183 * 120.14532 * 359.70098 * 16 15 14 18 18 C 1.38917 * 120.08080 * 0.55652 * 17 16 15 19 19 O 1.35751 * 120.03230 * 179.74537 * 18 17 16 20 20 C 1.34827 * 117.00300 * 173.82204 * 19 18 17 21 21 H 1.08001 * 119.99789 * 354.59330 * 20 19 18 22 22 C 1.38648 * 119.99917 * 174.60123 * 20 19 18 23 23 N 1.31555 * 120.00195 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99750 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47309 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47198 * 119.99796 * 24 22 20 27 27 H 1.48501 * 109.47049 * 239.99418 * 24 22 20 28 28 C 1.38756 * 119.93875 * 359.46536 * 18 17 16 29 29 H 1.09000 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47441 * 300.00132 * 1 2 3 31 31 H 1.08997 * 109.47305 * 59.99903 * 1 2 3 32 32 H 1.08998 * 109.47406 * 239.99533 * 2 1 3 33 33 H 1.09004 * 109.46987 * 119.99913 * 2 1 3 34 34 H 1.09001 * 109.47262 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47128 * 299.99550 * 5 3 2 36 36 H 1.09002 * 109.47940 * 59.99881 * 5 3 2 37 37 H 1.09005 * 109.46918 * 65.00196 * 6 3 2 38 38 H 1.08993 * 109.47236 * 305.00253 * 6 3 2 39 39 H 1.09005 * 109.47011 * 60.00489 * 7 6 3 40 40 H 1.08993 * 109.47604 * 300.00264 * 7 6 3 41 41 H 0.96991 * 120.00125 * 359.97438 * 8 7 6 42 42 H 0.96997 * 119.99813 * 354.78106 * 13 11 9 43 43 H 1.08000 * 119.97223 * 0.02562 * 15 14 13 44 44 H 1.07998 * 119.92611 * 179.97438 * 16 15 14 45 45 H 1.07994 * 119.95482 * 180.29871 * 17 16 15 46 46 H 0.96997 * 119.99824 * 180.02562 * 23 22 20 47 47 H 1.08000 * 120.07290 * 180.22890 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5648 1.4443 0.1258 7 6 4.0644 2.8850 0.2511 8 7 5.5246 2.8867 0.3709 9 6 6.1891 4.0527 0.4942 10 8 5.5782 5.1012 0.5055 11 6 7.6777 4.0546 0.6158 12 8 8.2889 3.0060 0.6040 13 7 8.3424 5.2207 0.7386 14 6 9.7217 5.2184 0.9617 15 6 10.3026 4.2077 1.7191 16 6 11.6662 4.2054 1.9403 17 6 12.4577 5.2035 1.4049 18 6 11.8828 6.2193 0.6516 19 8 12.6607 7.2022 0.1304 20 6 12.0617 8.0841 -0.6949 21 1 11.0310 7.9395 -0.9835 22 6 12.7688 9.1766 -1.1732 23 7 14.0241 9.3530 -0.8214 24 14 11.9386 10.3989 -2.3160 25 1 10.5350 9.9776 -2.5562 26 1 11.9515 11.7469 -1.6929 27 1 12.6695 10.4439 -3.6079 28 6 10.5135 6.2252 0.4276 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9982 3.1543 -1.3072 35 1 2.0698 1.5875 -2.1491 36 1 0.5489 2.1253 -1.3970 37 1 4.0029 0.9835 -0.7596 38 1 3.8570 0.8800 1.0113 39 1 3.6263 3.3458 1.1365 40 1 3.7723 3.4493 -0.6344 41 1 6.0129 2.0487 0.3623 42 1 7.8632 6.0614 0.6721 43 1 9.6872 3.4235 2.1349 44 1 12.1151 3.4194 2.5293 45 1 13.5241 5.1960 1.5757 46 1 14.5187 10.1175 -1.1557 47 1 10.0648 7.0119 -0.1608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850590642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:36 Heat of formation + Delta-G solvation = -109.783856 kcal Electronic energy + Delta-G solvation = -27312.656465 eV Core-core repulsion = 23266.868057 eV Total energy + Delta-G solvation = -4045.788408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.16039 -40.84466 -39.89280 -38.39095 -38.18964 -36.27161 -35.43856 -34.24623 -32.07876 -31.15123 -30.41438 -29.15592 -27.43745 -26.82662 -25.40862 -23.57282 -23.24881 -22.60346 -21.55120 -20.80305 -20.06446 -19.68364 -18.97239 -17.92992 -17.33789 -17.01741 -16.83369 -16.74173 -16.41575 -15.99733 -15.90262 -15.68938 -15.47193 -15.29008 -14.95530 -14.64609 -14.54300 -14.29488 -14.19004 -13.61073 -13.57117 -13.36944 -13.11334 -12.82472 -12.80190 -12.76856 -12.58004 -12.54118 -12.40644 -12.10387 -12.01012 -11.61185 -11.51231 -11.39754 -11.34918 -11.34249 -10.83685 -10.71112 -10.34880 -9.44054 -8.95290 -8.48058 -6.16651 -0.06779 0.58315 0.69982 1.15340 1.35622 1.43201 1.53084 1.99795 2.16534 2.47630 2.80296 3.13528 3.26348 3.46641 3.70724 3.92099 4.00662 4.07678 4.23326 4.27886 4.34768 4.38667 4.53899 4.56931 4.57229 4.58750 4.69420 4.75330 4.86407 4.92148 4.98968 5.06421 5.09238 5.13717 5.19011 5.21235 5.25272 5.27225 5.29465 5.31144 5.55464 5.57419 5.60081 5.63607 5.84189 5.99968 6.11615 6.23476 6.59412 6.78892 6.96625 7.74807 8.74778 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.001951 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.403960 B =14349.838203 C =15703.218822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.086 4.086 4 H 0.074 0.926 5 C -0.156 4.156 6 C -0.121 4.121 7 C 0.113 3.887 8 N -0.684 5.684 9 C 0.516 3.484 10 O -0.539 6.539 11 C 0.507 3.493 12 O -0.515 6.515 13 N -0.636 5.636 14 C 0.177 3.823 15 C -0.194 4.194 16 C -0.048 4.048 17 C -0.206 4.206 18 C 0.135 3.865 19 O -0.224 6.224 20 C -0.413 4.413 21 H 0.100 0.900 22 C -0.019 4.019 23 N -0.916 5.916 24 Si 1.016 2.984 25 H -0.253 1.253 26 H -0.268 1.268 27 H -0.269 1.269 28 C -0.256 4.256 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.422 0.578 42 H 0.426 0.574 43 H 0.138 0.862 44 H 0.161 0.839 45 H 0.124 0.876 46 H 0.273 0.727 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.810 -17.664 2.230 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.105 4.105 4 H 0.093 0.907 5 C -0.213 4.213 6 C -0.159 4.159 7 C -0.009 4.009 8 N -0.337 5.337 9 C 0.296 3.704 10 O -0.417 6.417 11 C 0.289 3.711 12 O -0.390 6.390 13 N -0.282 5.282 14 C 0.084 3.916 15 C -0.214 4.214 16 C -0.066 4.066 17 C -0.225 4.225 18 C 0.083 3.917 19 O -0.130 6.130 20 C -0.489 4.489 21 H 0.118 0.882 22 C -0.217 4.217 23 N -0.554 5.554 24 Si 0.835 3.165 25 H -0.176 1.176 26 H -0.193 1.193 27 H -0.194 1.194 28 C -0.278 4.278 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.259 0.741 42 H 0.265 0.735 43 H 0.156 0.844 44 H 0.179 0.821 45 H 0.142 0.858 46 H 0.082 0.918 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.504 -17.507 2.220 31.015 hybrid contribution 0.114 0.975 -0.584 1.142 sum -25.390 -16.532 1.636 30.342 Atomic orbital electron populations 1.21831 0.95709 1.01782 1.01971 1.21555 0.96091 0.95577 1.02341 1.21069 0.93626 0.96983 0.98793 0.90732 1.21988 1.01849 1.00338 0.97091 1.21847 0.96340 0.93844 1.03880 1.21766 0.76870 0.99529 1.02737 1.45777 1.09073 1.08335 1.70500 1.19674 0.87070 0.85193 0.78485 1.90784 1.69218 1.31987 1.49680 1.20449 0.89096 0.83967 0.77565 1.90771 1.69438 1.31306 1.47468 1.43136 1.06413 1.10222 1.68446 1.17441 0.81936 0.96226 0.96047 1.20896 0.95845 1.00872 1.03810 1.20965 0.92404 0.96589 0.96679 1.20562 1.00817 0.96115 1.05045 1.19603 0.89973 0.89513 0.92600 1.83982 1.36701 1.35821 1.56537 1.21797 0.98756 1.04336 1.24006 0.88240 1.26524 0.96379 0.99003 0.99815 1.70176 1.10190 1.30224 1.44806 0.84569 0.78442 0.76722 0.76745 1.17633 1.19251 1.19400 1.20851 0.93248 1.03922 1.09751 0.92595 0.92771 0.92461 0.91812 0.91583 0.92908 0.92515 0.91974 0.90342 0.89948 0.90902 0.90907 0.74063 0.73524 0.84436 0.82116 0.85842 0.91773 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.67 71.98 0.70 -0.42 16 2 C -0.12 -0.85 5.40 30.59 0.17 -0.68 16 3 C -0.09 -0.67 2.39 -10.79 -0.03 -0.70 16 4 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 5 C -0.16 -1.37 8.70 71.98 0.63 -0.74 16 6 C -0.12 -0.99 4.80 30.59 0.15 -0.84 16 7 C 0.11 1.48 5.43 86.38 0.47 1.95 16 8 N -0.68 -11.54 5.55 -464.51 -2.58 -14.12 16 9 C 0.52 12.38 7.89 87.24 0.69 13.07 16 10 O -0.54 -15.25 16.48 -3.27 -0.05 -15.30 16 11 C 0.51 14.27 7.62 87.24 0.66 14.94 16 12 O -0.51 -15.80 14.18 -3.34 -0.05 -15.85 16 13 N -0.64 -19.56 5.32 -304.88 -1.62 -21.18 16 14 C 0.18 6.56 6.27 38.20 0.24 6.80 16 15 C -0.19 -6.69 8.65 22.43 0.19 -6.50 16 16 C -0.05 -1.62 10.03 22.23 0.22 -1.40 16 17 C -0.21 -8.59 9.99 22.42 0.22 -8.36 16 18 C 0.13 6.62 6.64 22.56 0.15 6.77 16 19 O -0.22 -13.29 9.76 -22.73 -0.22 -13.51 16 20 C -0.41 -23.75 9.44 67.92 0.64 -23.11 16 21 H 0.10 5.28 5.30 -2.91 -0.02 5.27 16 22 C -0.02 -1.08 5.49 84.83 0.47 -0.61 16 23 N -0.92 -55.57 13.67 21.61 0.30 -55.27 16 24 Si 1.02 42.65 29.55 68.60 2.03 44.68 16 25 H -0.25 -9.87 7.11 99.48 0.71 -9.17 16 26 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 28 C -0.26 -11.21 9.05 22.52 0.20 -11.00 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.06 0.41 6.56 -2.39 -0.02 0.40 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.05 0.53 6.57 -2.39 -0.02 0.52 16 35 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.51 6.57 -2.39 -0.02 0.49 16 37 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.07 1.05 6.57 -2.39 -0.02 1.04 16 41 H 0.42 5.90 7.94 -92.71 -0.74 5.17 16 42 H 0.43 11.90 8.30 -92.71 -0.77 11.13 16 43 H 0.14 4.32 6.43 -2.91 -0.02 4.30 16 44 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 46 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 47 H 0.13 5.57 5.71 -2.91 -0.02 5.55 16 Total: -1.00 -71.89 390.93 3.08 -68.81 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.49 Total: 32.59 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 5.77 Total: -10.85 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.90 Total: -90.57 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.32 Total: -44.67 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -71.89 3.08 -68.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850590642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.971 kcal (2) G-P(sol) polarization free energy of solvation -71.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds