Wall clock time and date at job start Tue Mar 31 2020 17:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47049 * 2 1 4 4 C 1.53001 * 109.47107 * 240.00545 * 2 1 3 5 5 O 1.45195 * 109.47749 * 120.00439 * 2 1 3 6 6 C 1.34637 * 116.99930 * 59.99377 * 5 2 1 7 7 O 1.21506 * 120.00361 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99732 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99992 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47377 * 180.02562 * 9 8 6 11 11 N 1.46494 * 109.47394 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00009 * 179.97438 * 11 10 9 13 13 O 1.21609 * 120.00181 * 0.02562 * 12 11 10 14 14 C 1.47435 * 119.99851 * 180.02562 * 12 11 10 15 15 C 1.39227 * 120.28510 * 356.68670 * 14 12 11 16 16 C 1.38223 * 120.09723 * 180.28291 * 15 14 12 17 17 C 1.38826 * 120.67197 * 359.69417 * 16 15 14 18 18 C 1.37607 * 120.57000 * 0.02562 * 17 16 15 19 19 C 1.40702 * 119.88222 * 0.02562 * 18 17 16 20 20 C 1.40891 * 120.32820 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99743 * 145.79457 * 20 19 18 22 22 C 1.40273 * 119.99861 * 325.79822 * 20 19 18 23 23 N 1.30629 * 119.99711 * 340.74144 * 22 20 19 24 24 Si 1.86800 * 120.00012 * 160.74702 * 22 20 19 25 25 H 1.48505 * 109.46791 * 269.99431 * 24 22 20 26 26 H 1.48496 * 109.47300 * 29.99461 * 24 22 20 27 27 H 1.48496 * 109.47010 * 149.99877 * 24 22 20 28 28 H 1.08999 * 109.46674 * 299.99248 * 1 2 3 29 29 H 1.08995 * 109.47266 * 59.99799 * 1 2 3 30 30 H 1.08996 * 109.46742 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47338 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47023 * 300.00313 * 3 2 1 33 33 H 1.09000 * 109.47244 * 60.00204 * 3 2 1 34 34 H 1.09007 * 109.46912 * 299.99705 * 4 2 1 35 35 H 1.09004 * 109.47369 * 59.99440 * 4 2 1 36 36 H 1.08996 * 109.47366 * 180.02562 * 4 2 1 37 37 H 0.97004 * 120.00588 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.46632 * 60.00041 * 9 8 6 39 39 H 1.09005 * 109.46999 * 300.00374 * 9 8 6 40 40 H 1.09004 * 109.47250 * 59.99797 * 10 9 8 41 41 H 1.09005 * 109.47069 * 299.99973 * 10 9 8 42 42 H 0.96994 * 119.99831 * 359.97438 * 11 10 9 43 43 H 1.08005 * 119.95480 * 359.97438 * 15 14 12 44 44 H 1.07993 * 119.66771 * 179.71616 * 16 15 14 45 45 H 1.08002 * 119.71786 * 180.02562 * 17 16 15 46 46 H 1.07995 * 120.05544 * 180.02562 * 18 17 16 47 47 H 0.97003 * 120.00596 * 354.83519 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3382 7 8 0.9516 -2.5097 0.5036 8 7 2.0674 -2.6655 2.4169 9 6 1.6743 -4.0670 2.5829 10 6 2.2734 -4.6146 3.8798 11 7 1.8797 -6.0158 4.0461 12 6 2.2947 -6.7089 5.1249 13 8 2.9956 -6.1710 5.9606 14 6 1.8990 -8.1193 5.2920 15 6 1.0410 -8.7211 4.3754 16 6 0.6679 -10.0419 4.5390 17 6 1.1454 -10.7853 5.6098 18 6 1.9992 -10.2198 6.5289 19 6 2.3936 -8.8768 6.3858 20 6 3.2670 -8.2882 7.3216 21 1 3.9845 -7.5481 6.9994 22 6 3.2047 -8.6637 8.6718 23 7 2.1340 -9.2489 9.1382 24 14 4.6528 -8.3267 9.8027 25 1 5.5791 -9.4872 9.7799 26 1 5.3701 -7.1116 9.3398 27 1 4.1604 -8.1135 11.1873 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 2.6266 -2.2364 3.0835 38 1 2.0414 -4.6497 1.7382 39 1 0.5873 -4.1366 2.6274 40 1 1.9059 -4.0317 4.7244 41 1 3.3603 -4.5450 3.8358 42 1 1.3204 -6.4448 3.3798 43 1 0.6624 -8.1536 3.5380 44 1 -0.0017 -10.5004 3.8264 45 1 0.8441 -11.8163 5.7225 46 1 2.3660 -10.8059 7.3585 47 1 1.3541 -9.3565 8.5715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865031601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:48 Heat of formation + Delta-G solvation = -109.398352 kcal Electronic energy + Delta-G solvation = -27927.837258 eV Core-core repulsion = 23882.065566 eV Total energy + Delta-G solvation = -4045.771692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.98272 -39.15275 -37.86274 -37.04733 -35.56573 -34.45561 -34.05642 -33.34242 -30.38515 -29.49732 -28.44660 -27.73510 -27.68066 -25.29904 -23.74596 -22.26378 -21.99425 -20.93870 -20.28863 -19.56939 -18.50509 -18.04204 -16.91194 -16.57448 -16.45087 -15.61464 -15.39156 -14.87430 -14.83191 -14.66413 -14.59312 -14.12367 -13.96905 -13.73454 -13.68781 -13.43927 -12.83063 -12.64656 -12.55267 -12.26728 -12.21595 -12.21050 -12.11236 -11.81905 -11.78664 -11.61524 -11.52821 -11.16468 -10.93270 -10.78002 -10.64756 -10.39536 -10.30698 -10.19458 -9.65853 -9.43505 -9.10908 -8.61394 -8.53317 -7.82817 -7.64248 -7.17833 -4.49860 1.87262 2.19421 2.62690 2.70692 3.18253 3.28950 3.39780 3.63513 3.99504 4.02545 4.14767 4.39193 4.43816 4.57830 4.60141 4.61353 4.98238 5.13927 5.21566 5.23096 5.35869 5.36401 5.42541 5.45624 5.54070 5.65811 5.72996 5.84196 5.84626 5.88185 5.98276 6.03803 6.11789 6.16253 6.27963 6.45690 6.68465 6.92660 6.97025 7.16913 7.24338 7.45914 7.56575 7.69106 7.85191 8.04339 8.15079 8.17404 8.27533 8.69230 8.82398 9.25996 10.01233 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.002104 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.403155 B =13305.386665 C =14544.115966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.652 3.348 7 O -0.567 6.567 8 N -0.706 5.706 9 C 0.127 3.873 10 C 0.115 3.885 11 N -0.746 5.746 12 C 0.566 3.434 13 O -0.535 6.535 14 C -0.267 4.267 15 C -0.043 4.043 16 C -0.259 4.259 17 C -0.075 4.075 18 C -0.200 4.200 19 C 0.121 3.879 20 C -0.466 4.466 21 H 0.106 0.894 22 C 0.030 3.970 23 N -0.793 5.793 24 Si 1.073 2.927 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.276 1.276 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.409 0.591 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.394 0.606 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 15.475 -14.662 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.405 3.595 7 O -0.457 6.457 8 N -0.366 5.366 9 C 0.004 3.996 10 C -0.010 4.010 11 N -0.403 5.403 12 C 0.360 3.640 13 O -0.413 6.413 14 C -0.272 4.272 15 C -0.062 4.062 16 C -0.278 4.278 17 C -0.094 4.094 18 C -0.219 4.219 19 C 0.116 3.884 20 C -0.492 4.492 21 H 0.124 0.876 22 C -0.191 4.191 23 N -0.416 5.416 24 Si 0.896 3.104 25 H -0.200 1.200 26 H -0.197 1.197 27 H -0.201 1.201 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.244 0.756 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.229 0.771 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.125 0.875 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.327 15.438 -12.930 20.141 hybrid contribution -0.861 0.126 -1.803 2.002 sum -1.188 15.565 -14.733 21.464 Atomic orbital electron populations 1.22520 0.93941 1.05149 1.02505 1.22079 0.94415 0.91510 0.82063 1.21866 1.02300 0.92499 1.03146 1.22523 1.01600 1.03561 0.96428 1.86303 1.71561 1.23564 1.46540 1.17994 0.78874 0.80523 0.82141 1.90907 1.41072 1.70446 1.43236 1.44500 1.55764 1.12503 1.23859 1.21466 1.00687 0.79078 0.98345 1.21159 1.00058 0.84188 0.95584 1.45818 1.56734 1.11018 1.26717 1.18369 0.79196 0.86627 0.79761 1.90689 1.37951 1.70970 1.41668 1.19332 1.10426 0.92306 1.05100 1.20726 0.95081 0.94588 0.95773 1.20256 1.09770 0.95550 1.02230 1.20758 0.96394 0.97736 0.94520 1.21257 1.04079 0.95232 1.01356 1.17505 0.89068 0.90525 0.91313 1.21212 1.14833 1.19515 0.93674 0.87641 1.27282 1.01864 0.91531 0.98464 1.70362 1.03222 1.26777 1.41218 0.83516 0.73890 0.77747 0.75220 1.20038 1.19741 1.20138 0.92131 0.91123 0.89329 0.91427 0.90124 0.91422 0.89330 0.91127 0.92134 0.75573 0.90466 0.90478 0.91269 0.91266 0.77117 0.89021 0.88825 0.88837 0.87506 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 2 C 0.14 1.21 1.13 -90.62 -0.10 1.11 16 3 C -0.14 -0.88 8.85 37.16 0.33 -0.55 16 4 C -0.18 -1.60 8.37 37.16 0.31 -1.29 16 5 O -0.36 -3.96 9.94 -40.32 -0.40 -4.36 16 6 C 0.65 7.86 8.06 54.05 0.44 8.30 16 7 O -0.57 -7.97 11.88 -19.28 -0.23 -8.20 16 8 N -0.71 -7.38 5.56 -65.28 -0.36 -7.75 16 9 C 0.13 1.40 5.79 -4.04 -0.02 1.38 16 10 C 0.12 1.54 5.79 -4.05 -0.02 1.52 16 11 N -0.75 -12.31 5.51 -61.38 -0.34 -12.65 16 12 C 0.57 12.61 7.73 -12.52 -0.10 12.51 16 13 O -0.53 -13.65 13.56 5.27 0.07 -13.58 16 14 C -0.27 -6.32 5.92 -104.36 -0.62 -6.94 16 15 C -0.04 -0.88 9.53 -39.22 -0.37 -1.25 16 16 C -0.26 -5.32 10.03 -39.37 -0.39 -5.71 16 17 C -0.08 -1.64 10.01 -39.59 -0.40 -2.03 16 18 C -0.20 -4.91 7.87 -38.88 -0.31 -5.21 16 19 C 0.12 3.15 5.17 -106.54 -0.55 2.60 16 20 C -0.47 -12.58 7.65 -37.81 -0.29 -12.87 16 21 H 0.11 2.98 5.92 -52.49 -0.31 2.66 16 22 C 0.03 0.78 5.04 -17.30 -0.09 0.69 16 23 N -0.79 -20.99 12.57 55.56 0.70 -20.29 16 24 Si 1.07 22.26 29.98 -169.99 -5.10 17.17 16 25 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 26 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.98 5.88 -51.93 -0.31 0.68 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.98 5.88 -51.92 -0.31 0.68 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.41 3.53 8.58 -40.82 -0.35 3.18 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.39 5.58 6.51 -40.82 -0.27 5.31 16 43 H 0.09 1.53 6.41 -52.48 -0.34 1.19 16 44 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 45 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 46 H 0.11 2.68 6.94 -52.49 -0.36 2.31 16 47 H 0.30 8.09 6.55 -40.82 -0.27 7.82 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -31.20 383.99 -8.54 -39.74 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -6.80 Total: 13.17 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.88 Total: -9.04 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.00 Total: -40.68 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.56 Total: -26.14 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.10 Total: 17.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.20 -8.54 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865031601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.654 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds