Wall clock time and date at job start Tue Mar 31 2020 17:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47049 * 2 1 4 4 C 1.53001 * 109.47107 * 240.00545 * 2 1 3 5 5 O 1.45195 * 109.47749 * 120.00439 * 2 1 3 6 6 C 1.34637 * 116.99930 * 59.99377 * 5 2 1 7 7 O 1.21506 * 120.00361 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99732 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99992 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47377 * 180.02562 * 9 8 6 11 11 N 1.46494 * 109.47394 * 179.97438 * 10 9 8 12 12 C 1.34776 * 120.00009 * 179.97438 * 11 10 9 13 13 O 1.21609 * 120.00181 * 0.02562 * 12 11 10 14 14 C 1.47435 * 119.99851 * 180.02562 * 12 11 10 15 15 C 1.39227 * 120.28510 * 356.68670 * 14 12 11 16 16 C 1.38223 * 120.09723 * 180.28291 * 15 14 12 17 17 C 1.38826 * 120.67197 * 359.69417 * 16 15 14 18 18 C 1.37607 * 120.57000 * 0.02562 * 17 16 15 19 19 C 1.40702 * 119.88222 * 0.02562 * 18 17 16 20 20 C 1.40891 * 120.32820 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99743 * 145.79457 * 20 19 18 22 22 C 1.40273 * 119.99861 * 325.79822 * 20 19 18 23 23 N 1.30629 * 119.99711 * 340.74144 * 22 20 19 24 24 Si 1.86800 * 120.00012 * 160.74702 * 22 20 19 25 25 H 1.48505 * 109.46791 * 269.99431 * 24 22 20 26 26 H 1.48496 * 109.47300 * 29.99461 * 24 22 20 27 27 H 1.48496 * 109.47010 * 149.99877 * 24 22 20 28 28 H 1.08999 * 109.46674 * 299.99248 * 1 2 3 29 29 H 1.08995 * 109.47266 * 59.99799 * 1 2 3 30 30 H 1.08996 * 109.46742 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47338 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47023 * 300.00313 * 3 2 1 33 33 H 1.09000 * 109.47244 * 60.00204 * 3 2 1 34 34 H 1.09007 * 109.46912 * 299.99705 * 4 2 1 35 35 H 1.09004 * 109.47369 * 59.99440 * 4 2 1 36 36 H 1.08996 * 109.47366 * 180.02562 * 4 2 1 37 37 H 0.97004 * 120.00588 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.46632 * 60.00041 * 9 8 6 39 39 H 1.09005 * 109.46999 * 300.00374 * 9 8 6 40 40 H 1.09004 * 109.47250 * 59.99797 * 10 9 8 41 41 H 1.09005 * 109.47069 * 299.99973 * 10 9 8 42 42 H 0.96994 * 119.99831 * 359.97438 * 11 10 9 43 43 H 1.08005 * 119.95480 * 359.97438 * 15 14 12 44 44 H 1.07993 * 119.66771 * 179.71616 * 16 15 14 45 45 H 1.08002 * 119.71786 * 180.02562 * 17 16 15 46 46 H 1.07995 * 120.05544 * 180.02562 * 18 17 16 47 47 H 0.97003 * 120.00596 * 354.83519 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6523 -1.9723 1.3382 7 8 0.9516 -2.5097 0.5036 8 7 2.0674 -2.6655 2.4169 9 6 1.6743 -4.0670 2.5829 10 6 2.2734 -4.6146 3.8798 11 7 1.8797 -6.0158 4.0461 12 6 2.2947 -6.7089 5.1249 13 8 2.9956 -6.1710 5.9606 14 6 1.8990 -8.1193 5.2920 15 6 1.0410 -8.7211 4.3754 16 6 0.6679 -10.0419 4.5390 17 6 1.1454 -10.7853 5.6098 18 6 1.9992 -10.2198 6.5289 19 6 2.3936 -8.8768 6.3858 20 6 3.2670 -8.2882 7.3216 21 1 3.9845 -7.5481 6.9994 22 6 3.2047 -8.6637 8.6718 23 7 2.1340 -9.2489 9.1382 24 14 4.6528 -8.3267 9.8027 25 1 5.5791 -9.4872 9.7799 26 1 5.3701 -7.1116 9.3398 27 1 4.1604 -8.1135 11.1873 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 2.6266 -2.2364 3.0835 38 1 2.0414 -4.6497 1.7382 39 1 0.5873 -4.1366 2.6274 40 1 1.9059 -4.0317 4.7244 41 1 3.3603 -4.5450 3.8358 42 1 1.3204 -6.4448 3.3798 43 1 0.6624 -8.1536 3.5380 44 1 -0.0017 -10.5004 3.8264 45 1 0.8441 -11.8163 5.7225 46 1 2.3660 -10.8059 7.3585 47 1 1.3541 -9.3565 8.5715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865031601.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:47 Heat of formation + Delta-G solvation = -130.400617 kcal Electronic energy + Delta-G solvation = -27928.747984 eV Core-core repulsion = 23882.065566 eV Total energy + Delta-G solvation = -4046.682418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.84491 -40.83835 -39.00673 -38.50824 -36.75593 -35.88960 -35.30248 -34.56771 -32.05375 -31.28019 -29.75390 -28.35204 -28.28656 -27.11056 -25.01688 -23.70949 -23.03152 -22.67759 -21.28669 -21.06496 -19.96873 -19.28484 -18.18836 -17.63124 -17.47975 -16.91344 -16.51229 -16.50370 -16.11484 -15.83971 -15.61672 -15.53693 -15.42518 -15.31419 -14.92523 -14.44073 -14.35932 -13.94831 -13.76081 -13.35431 -13.30395 -12.97198 -12.95991 -12.87798 -12.85326 -12.85033 -12.67542 -12.48565 -12.41963 -12.33576 -12.04944 -11.93578 -11.46093 -11.39695 -11.16722 -10.95369 -10.40233 -10.34490 -10.06396 -9.60834 -9.48910 -9.09620 -6.45645 0.40026 0.91438 1.01575 1.47377 1.63124 1.70506 1.77773 2.24058 2.31620 2.38727 2.74902 3.21736 3.56553 3.56653 3.75627 3.80605 3.95550 3.98090 4.22075 4.27852 4.32744 4.45498 4.54070 4.62971 4.68053 4.76770 4.77710 4.78048 4.84336 4.88440 4.88956 4.90366 5.03785 5.14676 5.19469 5.29302 5.34859 5.43689 5.49991 5.54776 5.65874 5.71438 5.89905 5.97427 6.20548 6.30466 6.34202 6.65801 6.84952 6.91533 7.26853 7.56875 8.05279 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.002104 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.403155 B =13305.386665 C =14544.115966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.649 3.351 7 O -0.589 6.589 8 N -0.701 5.701 9 C 0.142 3.858 10 C 0.119 3.881 11 N -0.726 5.726 12 C 0.562 3.438 13 O -0.575 6.575 14 C -0.284 4.284 15 C -0.041 4.041 16 C -0.245 4.245 17 C -0.072 4.072 18 C -0.226 4.226 19 C 0.095 3.905 20 C -0.509 4.509 21 H 0.082 0.918 22 C -0.004 4.004 23 N -0.818 5.818 24 Si 1.118 2.882 25 H -0.256 1.256 26 H -0.273 1.273 27 H -0.269 1.269 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.418 0.582 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.409 0.591 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.123 0.877 46 H 0.089 0.911 47 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 16.366 -17.163 23.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.402 3.598 7 O -0.480 6.480 8 N -0.361 5.361 9 C 0.019 3.981 10 C -0.005 4.005 11 N -0.381 5.381 12 C 0.355 3.645 13 O -0.456 6.456 14 C -0.288 4.288 15 C -0.059 4.059 16 C -0.264 4.264 17 C -0.091 4.091 18 C -0.245 4.245 19 C 0.091 3.909 20 C -0.537 4.537 21 H 0.100 0.900 22 C -0.219 4.219 23 N -0.442 5.442 24 Si 0.935 3.065 25 H -0.181 1.181 26 H -0.198 1.198 27 H -0.193 1.193 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.255 0.745 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.246 0.754 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.141 0.859 46 H 0.107 0.893 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.231 16.341 -15.482 22.544 hybrid contribution -0.740 -0.118 -1.336 1.532 sum -1.971 16.222 -16.819 23.450 Atomic orbital electron populations 1.22479 0.93914 1.03717 1.03633 1.22447 0.94649 0.92718 0.81427 1.21895 1.02448 0.90638 1.04358 1.22480 1.01639 1.02252 0.97357 1.86319 1.71550 1.22870 1.47586 1.18115 0.78677 0.80922 0.82053 1.90904 1.42053 1.70989 1.44043 1.44409 1.55642 1.12248 1.23824 1.21243 1.00619 0.79391 0.96849 1.21212 1.00173 0.82261 0.96847 1.45500 1.55489 1.12010 1.25102 1.18343 0.78969 0.86614 0.80567 1.90673 1.39745 1.71635 1.43543 1.19765 1.10687 0.93346 1.05049 1.21178 0.93561 0.95138 0.96070 1.20821 1.08552 0.95320 1.01708 1.21165 0.94826 0.99319 0.93766 1.21207 1.06135 0.94894 1.02272 1.17909 0.89310 0.91474 0.92198 1.21119 1.16646 1.20982 0.94908 0.89984 1.28471 1.03295 0.90635 0.99541 1.70470 1.03280 1.29763 1.40658 0.82982 0.71558 0.78147 0.73771 1.18092 1.19784 1.19313 0.92022 0.88999 0.91923 0.91221 0.87872 0.91252 0.91916 0.89008 0.91983 0.74524 0.89955 0.90078 0.91593 0.91375 0.75380 0.84490 0.84629 0.85871 0.89321 0.90474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.37 71.98 0.60 -2.28 16 2 C 0.12 2.00 1.13 -10.79 -0.01 1.99 16 3 C -0.14 -1.38 8.85 71.98 0.64 -0.74 16 4 C -0.18 -2.87 8.37 71.98 0.60 -2.26 16 5 O -0.37 -7.58 9.94 -55.47 -0.55 -8.13 16 6 C 0.65 15.00 8.06 129.79 1.05 16.05 16 7 O -0.59 -16.12 11.88 19.82 0.24 -15.89 16 8 N -0.70 -13.71 5.56 -590.85 -3.29 -17.00 16 9 C 0.14 2.86 5.79 86.38 0.50 3.36 16 10 C 0.12 3.04 5.79 86.38 0.50 3.54 16 11 N -0.73 -22.77 5.51 -466.37 -2.57 -25.33 16 12 C 0.56 25.08 7.73 86.67 0.67 25.75 16 13 O -0.57 -30.36 13.56 -4.06 -0.06 -30.42 16 14 C -0.28 -13.37 5.92 -19.70 -0.12 -13.49 16 15 C -0.04 -1.56 9.53 22.50 0.21 -1.34 16 16 C -0.25 -9.11 10.03 22.41 0.22 -8.89 16 17 C -0.07 -3.01 10.01 22.26 0.22 -2.78 16 18 C -0.23 -11.31 7.87 22.72 0.18 -11.14 16 19 C 0.10 5.13 5.17 -21.11 -0.11 5.02 16 20 C -0.51 -29.04 7.65 23.41 0.18 -28.86 16 21 H 0.08 4.95 5.92 -2.91 -0.02 4.93 16 22 C 0.00 -0.22 5.04 85.37 0.43 0.21 16 23 N -0.82 -45.46 12.57 21.88 0.28 -45.19 16 24 Si 1.12 46.77 29.98 68.60 2.06 48.83 16 25 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 1.35 5.88 -2.38 -0.01 1.34 16 35 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.42 6.69 8.58 -92.71 -0.80 5.90 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.41 10.32 6.51 -92.71 -0.60 9.71 16 43 H 0.14 3.89 6.41 -2.91 -0.02 3.87 16 44 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 45 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 46 H 0.09 4.67 6.94 -2.91 -0.02 4.65 16 47 H 0.28 16.20 6.55 -92.71 -0.61 15.60 16 Total: -1.00 -72.20 383.99 1.65 -70.55 By element: Atomic # 1 Polarization: 38.67 SS G_CDS: -0.23 Total: 38.44 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 5.77 Total: -15.86 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -5.58 Total: -87.52 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -0.37 Total: -54.44 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.06 Total: 48.83 kcal Total: -72.20 1.65 -70.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865031601.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.847 kcal (2) G-P(sol) polarization free energy of solvation -72.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds