Wall clock time and date at job start Tue Mar 31 2020 17:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47145 * 2 1 4 4 H 1.08996 * 109.46586 * 55.00010 * 3 2 1 5 5 C 1.50695 * 109.47087 * 174.99672 * 3 2 1 6 6 H 1.08010 * 119.99661 * 119.99996 * 5 3 2 7 7 C 1.37875 * 120.00613 * 300.00181 * 5 3 2 8 8 N 1.31521 * 119.99523 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00240 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47253 * 90.00365 * 9 7 5 11 11 H 1.48500 * 109.47041 * 209.99866 * 9 7 5 12 12 H 1.48496 * 109.47201 * 330.00143 * 9 7 5 13 13 N 1.46492 * 109.47162 * 295.00009 * 3 2 1 14 14 C 1.34778 * 120.00099 * 84.99537 * 13 3 2 15 15 O 1.21622 * 120.00106 * 0.02562 * 14 13 3 16 16 C 1.47290 * 120.00256 * 179.97438 * 14 13 3 17 17 C 1.36588 * 127.53892 * 0.02875 * 16 14 13 18 18 O 1.34098 * 108.89240 * 179.89809 * 17 16 14 19 19 C 1.33401 * 111.29626 * 359.56733 * 18 17 16 20 20 C 1.36142 * 108.04842 * 0.79035 * 19 18 17 21 21 C 1.47711 * 122.21346 * 179.06687 * 20 19 18 22 22 O 1.21625 * 122.33393 * 223.68360 * 21 20 19 23 23 N 1.35753 * 115.32978 * 43.69360 * 21 20 19 24 24 C 1.45336 * 119.18335 * 14.36349 * 23 21 20 25 25 C 1.53460 * 113.49452 * 273.76854 * 24 23 21 26 26 C 1.52998 * 109.49767 * 284.33461 * 25 24 23 27 27 C 1.53000 * 109.37841 * 164.37585 * 25 24 23 28 28 C 1.50513 * 128.59085 * 181.06436 * 19 18 17 29 29 H 1.09004 * 109.46950 * 60.00267 * 1 2 3 30 30 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47147 * 300.00042 * 1 2 3 32 32 H 1.09008 * 109.47534 * 240.00472 * 2 1 3 33 33 H 1.09000 * 109.47248 * 120.00399 * 2 1 3 34 34 H 0.96998 * 119.99467 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00603 * 264.99854 * 13 3 2 36 36 H 1.08000 * 125.55023 * 359.90753 * 17 16 14 37 37 H 0.97001 * 120.40611 * 194.07845 * 23 21 20 38 38 H 1.08999 * 108.61427 * 34.76812 * 24 23 21 39 39 H 1.09001 * 108.61485 * 152.52817 * 24 23 21 40 40 H 1.09008 * 109.46839 * 180.10807 * 26 25 24 41 41 H 1.09001 * 109.47195 * 300.09806 * 26 25 24 42 42 H 1.08995 * 109.47467 * 60.10634 * 26 25 24 43 43 H 1.08999 * 109.47182 * 299.96707 * 27 25 24 44 44 H 1.08995 * 109.47227 * 59.96675 * 27 25 24 45 45 H 1.09000 * 109.47106 * 179.97438 * 27 25 24 46 46 H 1.09003 * 109.45481 * 229.03663 * 28 19 18 47 47 H 1.08995 * 109.46147 * 349.00120 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0050 0.8801 1.3811 10 1 6.4428 2.1129 2.0837 11 1 6.4390 -0.3109 2.1546 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6325 -0.4315 16 6 0.0456 3.3234 -2.6253 17 6 0.7896 3.4491 -3.7638 18 8 0.0712 4.1133 -4.6808 19 6 -1.1353 4.4349 -4.2112 20 6 -1.2223 3.9856 -2.9290 21 6 -2.4278 4.1948 -2.1014 22 8 -2.3657 4.5455 -0.9385 23 7 -3.6098 3.9680 -2.7294 24 6 -3.6138 3.2585 -3.9978 25 6 -3.3946 4.1726 -5.2108 26 6 -4.6785 4.9525 -5.5010 27 6 -3.0286 3.3215 -6.4283 28 6 -2.2540 5.1571 -4.9128 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8293 -0.0618 2.9495 35 1 2.2719 2.1232 -1.9978 36 1 1.7930 3.0744 -3.9029 37 1 -4.4419 4.2720 -2.3343 38 1 -2.8237 2.5078 -3.9790 39 1 -4.5710 2.7490 -4.1085 40 1 -4.5229 5.6002 -6.3639 41 1 -5.4880 4.2539 -5.7126 42 1 -4.9392 5.5590 -4.6337 43 1 -2.1139 2.7660 -6.2216 44 1 -3.8380 2.6228 -6.6398 45 1 -2.8731 3.9693 -7.2910 46 1 -2.6245 5.9596 -4.2750 47 1 -1.8845 5.5778 -5.8479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867419558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:43 Heat of formation + Delta-G solvation = -66.578935 kcal Electronic energy + Delta-G solvation = -30084.415499 eV Core-core repulsion = 26040.500596 eV Total energy + Delta-G solvation = -4043.914902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.89212 -39.70754 -38.74458 -37.66836 -34.96981 -33.96557 -32.91298 -32.35020 -31.45971 -30.47390 -27.73433 -27.23350 -26.53642 -26.26247 -24.13135 -23.19867 -22.42170 -20.11682 -19.67790 -19.47673 -19.12427 -17.51926 -17.31453 -16.72465 -16.35472 -16.01300 -15.40566 -15.21906 -14.99721 -14.72920 -14.32273 -14.27606 -14.18046 -13.98220 -13.73111 -13.18835 -12.98270 -12.73681 -12.63603 -12.30022 -12.15122 -12.02257 -11.95317 -11.50690 -11.49264 -11.46220 -11.22927 -11.22071 -10.93804 -10.82316 -10.29411 -10.14553 -9.95397 -9.68025 -9.54582 -9.09157 -9.07563 -8.99192 -8.60432 -8.46512 -7.76842 -6.09386 -4.18914 1.33105 1.61875 2.54091 2.93409 3.26421 3.32956 3.34278 3.35018 3.96688 4.07711 4.19619 4.24725 4.35568 4.38162 4.56295 4.69726 4.90319 4.95822 5.02076 5.08614 5.21949 5.22537 5.29993 5.33734 5.43841 5.46991 5.53408 5.64380 5.75339 5.75813 5.87864 5.90824 6.10015 6.43437 6.50730 6.71132 6.83637 6.92507 7.08197 7.10547 7.25789 7.41387 7.49175 7.65316 7.77486 7.94397 8.21340 8.33203 8.69516 8.81811 9.18697 9.48408 10.96031 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003035 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.732039 B = 9224.155158 C = 9720.659421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.561 3.439 15 O -0.517 6.517 16 C -0.164 4.164 17 C -0.001 4.001 18 O -0.160 6.160 19 C 0.027 3.973 20 C -0.191 4.191 21 C 0.593 3.407 22 O -0.487 6.487 23 N -0.733 5.733 24 C 0.118 3.882 25 C -0.080 4.080 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.030 4.030 29 H 0.037 0.963 30 H 0.022 0.978 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.099 0.901 34 H 0.264 0.736 35 H 0.384 0.616 36 H 0.219 0.781 37 H 0.402 0.598 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 6.854 -20.874 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.346 3.654 15 O -0.394 6.394 16 C -0.169 4.169 17 C -0.069 4.069 18 O -0.055 6.055 19 C -0.025 4.025 20 C -0.196 4.196 21 C 0.379 3.621 22 O -0.359 6.359 23 N -0.388 5.388 24 C -0.008 4.008 25 C -0.081 4.081 26 C -0.197 4.197 27 C -0.200 4.200 28 C -0.067 4.067 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.216 0.784 36 H 0.235 0.765 37 H 0.238 0.762 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.810 6.903 -19.662 24.999 hybrid contribution 1.152 -0.032 -0.022 1.153 sum -12.658 6.871 -19.684 24.391 Atomic orbital electron populations 1.21840 0.98359 0.97942 1.01306 1.21931 0.92579 0.99753 1.02235 1.18799 0.94191 0.89133 0.80809 0.93135 1.21214 0.90637 1.39042 1.06342 0.92106 1.24887 0.98575 0.94830 0.95391 1.69903 1.35103 1.37525 1.09316 0.86456 0.84885 0.77636 0.78151 1.20583 1.21095 1.19875 1.46359 1.14038 1.56242 1.18609 1.17146 0.83219 0.79427 0.85640 1.90854 1.51171 1.58479 1.38921 1.21374 0.93757 1.05185 0.96628 1.24623 0.97655 0.97837 0.86816 1.83518 1.23370 1.57484 1.41122 1.22488 0.86030 1.01639 0.92380 1.20946 0.96575 1.07454 0.94660 1.17661 0.82559 0.76543 0.85328 1.90905 1.86062 1.44297 1.14608 1.45660 1.08629 1.61637 1.22886 1.21347 1.03583 0.93607 0.82261 1.21362 0.94712 0.95776 0.96291 1.21865 0.95768 1.00145 1.01960 1.21867 1.02033 0.99753 0.96307 1.20377 0.88860 0.96558 1.00892 0.94415 0.95911 0.93077 0.95065 0.88251 0.92560 0.78418 0.76514 0.76187 0.90603 0.89922 0.92121 0.91847 0.92200 0.92124 0.91911 0.91836 0.88554 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.99 2.24 -69.09 -0.15 6.84 16 4 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -25.01 11.29 55.43 0.63 -24.38 16 9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.70 -14.97 5.01 -56.06 -0.28 -15.25 16 14 C 0.56 12.16 6.38 -12.58 -0.08 12.08 16 15 O -0.52 -13.40 12.91 -3.81 -0.05 -13.45 16 16 C -0.16 -2.82 6.32 -103.60 -0.65 -3.48 16 17 C 0.00 -0.01 11.61 30.14 0.35 0.34 16 18 O -0.16 -1.89 10.48 8.60 0.09 -1.80 16 19 C 0.03 0.32 5.99 -35.15 -0.21 0.11 16 20 C -0.19 -3.02 4.98 -103.57 -0.52 -3.54 16 21 C 0.59 9.96 7.29 -11.95 -0.09 9.87 16 22 O -0.49 -10.66 17.12 -3.82 -0.07 -10.73 16 23 N -0.73 -8.28 5.25 -61.57 -0.32 -8.60 16 24 C 0.12 1.00 4.77 -4.43 -0.02 0.98 16 25 C -0.08 -0.51 0.74 -153.97 -0.11 -0.62 16 26 C -0.14 -0.64 8.35 37.16 0.31 -0.33 16 27 C -0.14 -0.80 8.24 37.16 0.31 -0.49 16 28 C -0.03 -0.24 4.46 -27.67 -0.12 -0.36 16 29 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.29 7.84 -51.93 -0.41 0.88 16 32 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.38 6.81 7.54 -40.82 -0.31 6.50 16 36 H 0.22 1.97 7.49 -52.49 -0.39 1.58 16 37 H 0.40 3.77 8.95 -40.82 -0.37 3.40 16 38 H 0.08 0.80 6.79 -51.93 -0.35 0.45 16 39 H 0.08 0.51 8.05 -51.93 -0.42 0.10 16 40 H 0.06 0.24 8.14 -51.92 -0.42 -0.19 16 41 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.42 7.86 -51.93 -0.41 0.02 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 0.78 7.92 -51.93 -0.41 0.37 16 47 H 0.09 0.56 8.02 -51.93 -0.42 0.14 16 LS Contribution 374.95 15.07 5.65 5.65 Total: -1.00 -35.69 374.95 -7.57 -43.26 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.98 Total: 7.13 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.22 Total: 2.46 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.02 Total: -48.23 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.02 Total: -25.98 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.69 -7.57 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867419558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.319 kcal (2) G-P(sol) polarization free energy of solvation -35.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds