Wall clock time and date at job start Tue Mar 31 2020 17:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47145 * 2 1 4 4 H 1.08996 * 109.46586 * 55.00010 * 3 2 1 5 5 C 1.50695 * 109.47087 * 174.99672 * 3 2 1 6 6 H 1.08010 * 119.99661 * 119.99996 * 5 3 2 7 7 C 1.37875 * 120.00613 * 300.00181 * 5 3 2 8 8 N 1.31521 * 119.99523 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00240 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47253 * 90.00365 * 9 7 5 11 11 H 1.48500 * 109.47041 * 209.99866 * 9 7 5 12 12 H 1.48496 * 109.47201 * 330.00143 * 9 7 5 13 13 N 1.46492 * 109.47162 * 295.00009 * 3 2 1 14 14 C 1.34778 * 120.00099 * 84.99537 * 13 3 2 15 15 O 1.21622 * 120.00106 * 0.02562 * 14 13 3 16 16 C 1.47290 * 120.00256 * 179.97438 * 14 13 3 17 17 C 1.36588 * 127.53892 * 0.02875 * 16 14 13 18 18 O 1.34098 * 108.89240 * 179.89809 * 17 16 14 19 19 C 1.33401 * 111.29626 * 359.56733 * 18 17 16 20 20 C 1.36142 * 108.04842 * 0.79035 * 19 18 17 21 21 C 1.47711 * 122.21346 * 179.06687 * 20 19 18 22 22 O 1.21625 * 122.33393 * 223.68360 * 21 20 19 23 23 N 1.35753 * 115.32978 * 43.69360 * 21 20 19 24 24 C 1.45336 * 119.18335 * 14.36349 * 23 21 20 25 25 C 1.53460 * 113.49452 * 273.76854 * 24 23 21 26 26 C 1.52998 * 109.49767 * 284.33461 * 25 24 23 27 27 C 1.53000 * 109.37841 * 164.37585 * 25 24 23 28 28 C 1.50513 * 128.59085 * 181.06436 * 19 18 17 29 29 H 1.09004 * 109.46950 * 60.00267 * 1 2 3 30 30 H 1.09003 * 109.46704 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47147 * 300.00042 * 1 2 3 32 32 H 1.09008 * 109.47534 * 240.00472 * 2 1 3 33 33 H 1.09000 * 109.47248 * 120.00399 * 2 1 3 34 34 H 0.96998 * 119.99467 * 179.97438 * 8 7 5 35 35 H 0.97004 * 120.00603 * 264.99854 * 13 3 2 36 36 H 1.08000 * 125.55023 * 359.90753 * 17 16 14 37 37 H 0.97001 * 120.40611 * 194.07845 * 23 21 20 38 38 H 1.08999 * 108.61427 * 34.76812 * 24 23 21 39 39 H 1.09001 * 108.61485 * 152.52817 * 24 23 21 40 40 H 1.09008 * 109.46839 * 180.10807 * 26 25 24 41 41 H 1.09001 * 109.47195 * 300.09806 * 26 25 24 42 42 H 1.08995 * 109.47467 * 60.10634 * 26 25 24 43 43 H 1.08999 * 109.47182 * 299.96707 * 27 25 24 44 44 H 1.08995 * 109.47227 * 59.96675 * 27 25 24 45 45 H 1.09000 * 109.47106 * 179.97438 * 27 25 24 46 46 H 1.09003 * 109.45481 * 229.03663 * 28 19 18 47 47 H 1.08995 * 109.46147 * 349.00120 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5418 1.4443 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3366 2.1729 9 14 6.0050 0.8801 1.3811 10 1 6.4428 2.1129 2.0837 11 1 6.4390 -0.3109 2.1546 12 1 6.6131 0.8396 0.0270 13 7 1.6525 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6325 -0.4315 16 6 0.0456 3.3234 -2.6253 17 6 0.7896 3.4491 -3.7638 18 8 0.0712 4.1133 -4.6808 19 6 -1.1353 4.4349 -4.2112 20 6 -1.2223 3.9856 -2.9290 21 6 -2.4278 4.1948 -2.1014 22 8 -2.3657 4.5455 -0.9385 23 7 -3.6098 3.9680 -2.7294 24 6 -3.6138 3.2585 -3.9978 25 6 -3.3946 4.1726 -5.2108 26 6 -4.6785 4.9525 -5.5010 27 6 -3.0286 3.3215 -6.4283 28 6 -2.2540 5.1571 -4.9128 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8293 -0.0618 2.9495 35 1 2.2719 2.1232 -1.9978 36 1 1.7930 3.0744 -3.9029 37 1 -4.4419 4.2720 -2.3343 38 1 -2.8237 2.5078 -3.9790 39 1 -4.5710 2.7490 -4.1085 40 1 -4.5229 5.6002 -6.3639 41 1 -5.4880 4.2539 -5.7126 42 1 -4.9392 5.5590 -4.6337 43 1 -2.1139 2.7660 -6.2216 44 1 -3.8380 2.6228 -6.6398 45 1 -2.8731 3.9693 -7.2910 46 1 -2.6245 5.9596 -4.2750 47 1 -1.8845 5.5778 -5.8479 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867419558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:42 Heat of formation + Delta-G solvation = -93.125516 kcal Electronic energy + Delta-G solvation = -30085.566645 eV Core-core repulsion = 26040.500596 eV Total energy + Delta-G solvation = -4045.066048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.95460 -40.71823 -40.48947 -38.65598 -36.91487 -34.94674 -34.44919 -33.93373 -32.95271 -31.88857 -29.05318 -28.12470 -27.53454 -27.06281 -25.59051 -24.77593 -23.93145 -21.77962 -20.94565 -20.63898 -20.31736 -18.90854 -18.40141 -17.98382 -17.54335 -17.37668 -17.11128 -16.48834 -16.22290 -16.13974 -15.85938 -15.42001 -15.08053 -15.03663 -14.82027 -14.63018 -14.54266 -13.93130 -13.85552 -13.52849 -13.47155 -13.20020 -12.96635 -12.83885 -12.70256 -12.64028 -12.53465 -12.25581 -12.18000 -12.07098 -12.03298 -11.73216 -11.62585 -11.23743 -11.07733 -10.90443 -10.83018 -10.53604 -10.05948 -9.73211 -9.57843 -8.15931 -6.34044 0.31104 0.34013 1.45019 1.46189 1.55084 1.56722 1.72241 2.30851 2.32891 2.51125 2.58077 3.13726 3.41081 3.44381 3.62578 3.75988 3.81527 4.05193 4.10562 4.34158 4.42824 4.44737 4.45962 4.52096 4.58019 4.69909 4.73615 4.80238 4.88107 4.93552 4.94991 5.03815 5.10074 5.11244 5.22156 5.25089 5.40851 5.41810 5.50101 5.53537 5.60318 5.76744 5.77654 5.92340 5.97955 6.07356 6.14848 6.73512 6.97082 7.19186 7.33010 7.57026 8.89966 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.003035 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.732039 B = 9224.155158 C = 9720.659421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.117 4.117 3 C 0.280 3.720 4 H -0.010 1.010 5 C -0.547 4.547 6 H 0.077 0.923 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.974 3.026 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.255 1.255 13 N -0.697 5.697 14 C 0.560 3.440 15 O -0.572 6.572 16 C -0.216 4.216 17 C 0.044 3.956 18 O -0.146 6.146 19 C 0.060 3.940 20 C -0.232 4.232 21 C 0.585 3.415 22 O -0.559 6.559 23 N -0.714 5.714 24 C 0.110 3.890 25 C -0.068 4.068 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.035 4.035 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.258 0.742 37 H 0.411 0.589 38 H 0.054 0.946 39 H 0.111 0.889 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.152 7.263 -25.559 29.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.156 4.156 3 C 0.177 3.823 4 H 0.008 0.992 5 C -0.585 4.585 6 H 0.095 0.905 7 C -0.187 4.187 8 N -0.555 5.555 9 Si 0.798 3.202 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.179 1.179 13 N -0.346 5.346 14 C 0.347 3.653 15 O -0.452 6.452 16 C -0.221 4.221 17 C -0.026 4.026 18 O -0.039 6.039 19 C 0.008 3.992 20 C -0.238 4.238 21 C 0.372 3.628 22 O -0.437 6.437 23 N -0.367 5.367 24 C -0.015 4.015 25 C -0.069 4.069 26 C -0.194 4.194 27 C -0.198 4.198 28 C -0.072 4.072 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.274 0.726 37 H 0.248 0.752 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.093 0.907 45 H 0.099 0.901 46 H 0.115 0.885 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.394 7.310 -24.462 28.831 hybrid contribution 0.922 -0.134 1.348 1.639 sum -12.472 7.175 -23.114 27.226 Atomic orbital electron populations 1.21656 0.97512 0.98954 0.99753 1.21766 0.93195 0.99076 1.01591 1.18372 0.93916 0.89076 0.80914 0.99189 1.21570 0.91001 1.38959 1.06946 0.90505 1.25833 1.03587 0.94331 0.94950 1.70075 1.37221 1.38352 1.09902 0.85321 0.78757 0.77272 0.78828 1.20726 1.21002 1.17876 1.46036 1.14681 1.56104 1.17815 1.17725 0.82354 0.78518 0.86679 1.90826 1.52633 1.60435 1.41344 1.21018 0.96179 1.08584 0.96325 1.25184 0.97936 0.94616 0.84821 1.83603 1.23201 1.56778 1.40325 1.23077 0.86255 0.99006 0.90886 1.21023 0.96369 1.09919 0.96440 1.18043 0.84325 0.75660 0.84755 1.90855 1.87233 1.48035 1.17551 1.45584 1.07464 1.60119 1.23546 1.21662 1.04407 0.93710 0.81697 1.21317 0.95055 0.95192 0.95385 1.21858 0.94776 1.00344 1.02407 1.21878 1.01788 0.99980 0.96128 1.20722 0.87967 0.96628 1.01836 0.94334 0.93342 0.96306 0.93402 0.90866 0.92626 0.76119 0.72597 0.75162 0.92723 0.87073 0.90602 0.90537 0.92681 0.93619 0.90696 0.90074 0.88537 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.51 71.98 0.61 -5.32 16 2 C -0.12 -6.02 5.45 30.60 0.17 -5.85 16 3 C 0.28 15.06 2.24 44.25 0.10 15.16 16 4 H -0.01 -0.64 7.58 -2.39 -0.02 -0.66 16 5 C -0.55 -29.35 8.73 25.60 0.22 -29.13 16 6 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 7 C 0.01 0.71 5.29 84.65 0.45 1.15 16 8 N -0.92 -53.94 11.29 21.45 0.24 -53.70 16 9 Si 0.97 42.50 29.54 68.60 2.03 44.53 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 13 N -0.70 -30.33 5.01 -449.52 -2.25 -32.59 16 14 C 0.56 25.44 6.38 86.62 0.55 25.99 16 15 O -0.57 -32.07 12.91 4.57 0.06 -32.01 16 16 C -0.22 -7.49 6.32 -19.20 -0.12 -7.61 16 17 C 0.04 1.00 11.61 67.43 0.78 1.78 16 18 O -0.15 -2.95 10.48 7.85 0.08 -2.87 16 19 C 0.06 1.31 5.99 25.14 0.15 1.46 16 20 C -0.23 -7.44 4.98 -19.18 -0.10 -7.54 16 21 C 0.58 20.70 7.29 86.59 0.63 21.33 16 22 O -0.56 -26.65 17.12 4.56 0.08 -26.57 16 23 N -0.71 -16.21 5.25 -466.41 -2.45 -18.66 16 24 C 0.11 1.67 4.77 86.75 0.41 2.09 16 25 C -0.07 -0.64 0.74 -51.83 -0.04 -0.68 16 26 C -0.14 -0.72 8.35 71.98 0.60 -0.11 16 27 C -0.14 -1.00 8.24 71.98 0.59 -0.41 16 28 C -0.03 -0.44 4.46 29.99 0.13 -0.31 16 29 H 0.04 1.84 5.65 -2.38 -0.01 1.83 16 30 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.02 0.99 7.84 -2.39 -0.02 0.97 16 32 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.07 4.17 5.95 -2.39 -0.01 4.16 16 34 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.40 13.95 7.54 -92.70 -0.70 13.25 16 36 H 0.26 3.56 7.49 -2.91 -0.02 3.54 16 37 H 0.41 7.76 8.95 -92.71 -0.83 6.93 16 38 H 0.05 1.11 6.79 -2.39 -0.02 1.09 16 39 H 0.11 1.09 8.05 -2.39 -0.02 1.07 16 40 H 0.08 0.23 8.14 -2.38 -0.02 0.21 16 41 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.04 0.48 7.86 -2.39 -0.02 0.46 16 44 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.08 0.34 8.14 -2.39 -0.02 0.33 16 46 H 0.10 1.33 7.92 -2.39 -0.02 1.31 16 47 H 0.12 0.89 8.02 -2.39 -0.02 0.88 16 Total: -1.00 -86.72 374.95 2.42 -84.30 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -0.52 Total: 25.57 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 5.15 Total: 12.00 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -4.46 Total: -104.95 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: 0.22 Total: -61.45 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -86.72 2.42 -84.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867419558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.830 kcal (2) G-P(sol) polarization free energy of solvation -86.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds