Wall clock time and date at job start Tue Mar 31 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 H 1.09000 * 109.47137 * 304.89804 * 3 2 1 5 5 C 1.50701 * 109.47151 * 184.90182 * 3 2 1 6 6 H 1.07994 * 120.00109 * 245.45500 * 5 3 2 7 7 C 1.37880 * 119.99893 * 65.45373 * 5 3 2 8 8 N 1.31514 * 119.99941 * 9.46693 * 7 5 3 9 9 Si 1.86799 * 119.99619 * 189.47152 * 7 5 3 10 10 H 1.48501 * 109.47131 * 84.99725 * 9 7 5 11 11 H 1.48504 * 109.46825 * 204.98920 * 9 7 5 12 12 H 1.48490 * 109.47263 * 324.98862 * 9 7 5 13 13 N 1.46500 * 109.47179 * 64.90119 * 3 2 1 14 14 C 1.34776 * 119.99940 * 275.00169 * 13 3 2 15 15 O 1.21621 * 119.99960 * 359.97438 * 14 13 3 16 16 C 1.47292 * 119.99647 * 179.97438 * 14 13 3 17 17 C 1.36580 * 127.54351 * 0.02562 * 16 14 13 18 18 O 1.34098 * 108.89855 * 179.89900 * 17 16 14 19 19 C 1.33405 * 111.28842 * 359.56612 * 18 17 16 20 20 C 1.36150 * 108.05179 * 0.79081 * 19 18 17 21 21 C 1.47706 * 122.20903 * 179.06392 * 20 19 18 22 22 O 1.21623 * 122.33575 * 223.67699 * 21 20 19 23 23 N 1.35752 * 115.33372 * 43.70167 * 21 20 19 24 24 C 1.45346 * 119.18076 * 14.35243 * 23 21 20 25 25 C 1.53456 * 113.49357 * 273.77247 * 24 23 21 26 26 C 1.52997 * 109.50047 * 284.33427 * 25 24 23 27 27 C 1.52997 * 109.37986 * 164.37901 * 25 24 23 28 28 C 1.50519 * 128.58858 * 181.06641 * 19 18 17 29 29 H 1.08997 * 109.47095 * 299.99830 * 1 2 3 30 30 H 1.08999 * 109.47083 * 60.00212 * 1 2 3 31 31 H 1.09005 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46863 * 239.99886 * 2 1 3 33 33 H 1.08998 * 109.46996 * 120.00337 * 2 1 3 34 34 H 0.96999 * 119.99931 * 180.02562 * 8 7 5 35 35 H 0.96996 * 119.99963 * 94.99761 * 13 3 2 36 36 H 1.08009 * 125.55076 * 359.89978 * 17 16 14 37 37 H 0.96999 * 120.41050 * 194.07508 * 23 21 20 38 38 H 1.09000 * 108.61559 * 34.77509 * 24 23 21 39 39 H 1.08998 * 108.60857 * 152.52756 * 24 23 21 40 40 H 1.08998 * 109.47323 * 180.10985 * 26 25 24 41 41 H 1.09007 * 109.47223 * 300.10738 * 26 25 24 42 42 H 1.08999 * 109.47299 * 60.10970 * 26 25 24 43 43 H 1.08997 * 109.47655 * 299.96826 * 27 25 24 44 44 H 1.09003 * 109.46928 * 59.96821 * 27 25 24 45 45 H 1.08998 * 109.47119 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.45407 * 229.03750 * 28 19 18 47 47 H 1.08996 * 109.45620 * 349.00264 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6938 7 6 4.1412 0.9801 -1.2733 8 7 3.4096 0.7115 -2.3326 9 14 5.9919 0.7328 -1.3290 10 1 6.3289 -0.6067 -0.7836 11 1 6.4618 0.8274 -2.7345 12 1 6.6561 1.7809 -0.5134 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6651 1.3636 15 8 -0.3421 2.6328 0.4269 16 6 0.0411 3.3239 2.6214 17 6 0.7831 3.4501 3.7611 18 8 0.0645 4.1177 4.6755 19 6 -1.1334 4.4574 4.1965 20 6 -1.2274 3.9862 2.9226 21 6 -2.4415 4.1718 2.1021 22 8 -2.9119 3.2778 1.4248 23 7 -2.9955 5.4100 2.1563 24 6 -2.2261 6.5065 2.7203 25 6 -2.3524 6.6216 4.2453 26 6 -3.7113 7.2281 4.6009 27 6 -1.2368 7.5214 4.7807 28 6 -2.2330 5.2271 4.8776 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8310 0.3846 -3.1428 35 1 2.2687 2.1243 1.9977 36 1 1.7855 3.0736 3.9028 37 1 -3.8922 5.5618 1.8191 38 1 -1.1760 6.3613 2.4668 39 1 -2.5646 7.4382 2.2670 40 1 -3.7997 7.3114 5.6841 41 1 -3.7961 8.2179 4.1523 42 1 -4.5062 6.5870 4.2198 43 1 -0.2686 7.0895 4.5276 44 1 -1.3215 8.5112 4.3320 45 1 -1.3253 7.6046 5.8639 46 1 -3.1761 4.6934 4.7603 47 1 -2.0024 5.3281 5.9381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867419559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:46 Heat of formation + Delta-G solvation = -68.008161 kcal Electronic energy + Delta-G solvation = -30051.486165 eV Core-core repulsion = 26007.509287 eV Total energy + Delta-G solvation = -4043.976878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.89043 -39.70253 -38.74444 -37.66336 -34.94911 -33.95968 -32.90937 -32.33295 -31.49255 -30.50195 -27.72644 -27.22219 -26.53456 -26.25605 -24.13094 -23.18400 -22.41169 -20.13727 -19.67644 -19.48282 -19.13330 -17.51345 -17.31666 -16.72053 -16.33719 -16.00941 -15.41776 -15.21719 -14.99631 -14.71657 -14.31624 -14.28083 -14.17009 -13.97056 -13.72096 -13.20655 -12.97484 -12.72514 -12.63518 -12.29709 -12.13891 -12.01950 -11.95512 -11.50296 -11.47816 -11.41053 -11.30118 -11.22046 -10.98810 -10.75434 -10.30957 -10.15276 -9.95035 -9.69718 -9.55661 -9.08538 -9.07185 -9.01674 -8.60296 -8.44953 -7.78545 -6.11996 -4.17700 1.33170 1.62005 2.54233 2.93570 3.26171 3.32764 3.33868 3.35862 3.97581 4.06756 4.20290 4.25130 4.36034 4.38601 4.56362 4.70117 4.90731 4.96409 5.02262 5.09415 5.20910 5.23230 5.30170 5.34073 5.45035 5.47809 5.54025 5.65157 5.75583 5.76114 5.88367 5.91421 6.10101 6.44743 6.50757 6.70542 6.83724 6.92980 7.09211 7.11116 7.25919 7.40187 7.48321 7.65753 7.76192 7.88852 8.10663 8.33482 8.70114 8.82911 9.18738 9.48167 10.96209 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003090 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.261111 B = 9060.680050 C = 9648.739588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.271 3.729 4 H 0.057 0.943 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.878 5.878 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.561 3.439 15 O -0.517 6.517 16 C -0.164 4.164 17 C -0.001 4.001 18 O -0.160 6.160 19 C 0.026 3.974 20 C -0.191 4.191 21 C 0.593 3.407 22 O -0.487 6.487 23 N -0.733 5.733 24 C 0.118 3.882 25 C -0.080 4.080 26 C -0.140 4.140 27 C -0.142 4.142 28 C -0.030 4.030 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.384 0.616 36 H 0.218 0.782 37 H 0.402 0.598 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.096 0.904 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 14.138 18.142 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.169 3.831 4 H 0.075 0.925 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.725 3.275 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.352 5.352 14 C 0.346 3.654 15 O -0.394 6.394 16 C -0.169 4.169 17 C -0.069 4.069 18 O -0.055 6.055 19 C -0.025 4.025 20 C -0.196 4.196 21 C 0.379 3.621 22 O -0.359 6.359 23 N -0.388 5.388 24 C -0.008 4.008 25 C -0.081 4.081 26 C -0.197 4.197 27 C -0.200 4.200 28 C -0.067 4.067 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.216 0.784 36 H 0.235 0.765 37 H 0.238 0.762 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.114 0.886 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.881 13.555 17.171 24.433 hybrid contribution 1.160 -0.233 0.063 1.185 sum -9.721 13.321 17.234 23.853 Atomic orbital electron populations 1.21840 0.97754 0.98178 1.01809 1.21854 0.93126 0.99743 1.01076 1.18806 0.94272 0.88930 0.81044 0.92508 1.21158 0.90500 1.44149 1.01801 0.92112 1.24887 0.98407 0.95187 0.94989 1.69992 1.35726 1.43601 1.02140 0.86537 0.85061 0.78685 0.77254 1.20433 1.21199 1.19937 1.46347 1.14016 1.56292 1.18581 1.17147 0.83050 0.79519 0.85718 1.90857 1.50920 1.58702 1.38894 1.21370 0.93890 1.04878 0.96799 1.24621 0.97570 0.98228 0.86517 1.83520 1.23751 1.57282 1.40943 1.22494 0.86307 1.00301 0.93445 1.20946 0.96592 1.06265 0.95822 1.17658 0.82662 0.81986 0.79775 1.90901 1.63809 1.42938 1.38254 1.45660 1.19587 1.08546 1.65003 1.21353 0.97647 0.89975 0.91861 1.21358 0.97157 0.93877 0.95741 1.21865 0.95148 1.00842 1.01880 1.21868 0.97707 0.99183 1.01217 1.20376 0.92964 0.93551 0.99782 0.93835 0.92950 0.95845 0.90266 0.94759 0.92541 0.78440 0.76519 0.76188 0.90562 0.89903 0.92129 0.91840 0.92209 0.92105 0.91900 0.91845 0.88566 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.51 37.16 0.32 -3.00 16 2 C -0.12 -2.95 5.50 -26.73 -0.15 -3.10 16 3 C 0.27 6.94 2.11 -69.08 -0.15 6.79 16 4 H 0.06 1.71 7.52 -51.93 -0.39 1.32 16 5 C -0.54 -14.21 8.66 -34.44 -0.30 -14.51 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.88 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -25.14 12.16 55.43 0.67 -24.47 16 9 Si 0.90 20.62 29.55 -169.99 -5.02 15.60 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.70 -14.91 5.01 -56.05 -0.28 -15.19 16 14 C 0.56 12.13 6.37 -12.58 -0.08 12.05 16 15 O -0.52 -13.36 12.91 -3.79 -0.05 -13.41 16 16 C -0.16 -2.81 6.32 -103.61 -0.65 -3.47 16 17 C 0.00 -0.01 11.61 30.13 0.35 0.34 16 18 O -0.16 -1.88 10.48 8.59 0.09 -1.79 16 19 C 0.03 0.31 5.99 -35.15 -0.21 0.10 16 20 C -0.19 -3.01 4.98 -103.57 -0.52 -3.53 16 21 C 0.59 9.94 7.29 -11.95 -0.09 9.85 16 22 O -0.49 -10.58 17.12 -3.79 -0.06 -10.65 16 23 N -0.73 -8.32 5.25 -61.57 -0.32 -8.64 16 24 C 0.12 1.01 4.77 -4.43 -0.02 0.99 16 25 C -0.08 -0.52 0.74 -153.97 -0.11 -0.63 16 26 C -0.14 -0.65 8.35 37.16 0.31 -0.34 16 27 C -0.14 -0.81 8.24 37.16 0.31 -0.51 16 28 C -0.03 -0.24 4.46 -27.67 -0.12 -0.36 16 29 H 0.04 1.05 5.65 -51.93 -0.29 0.76 16 30 H 0.05 1.35 7.84 -51.93 -0.41 0.94 16 31 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 2.14 6.80 -51.93 -0.35 1.79 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.38 6.76 7.53 -40.82 -0.31 6.45 16 36 H 0.22 1.95 7.49 -52.48 -0.39 1.56 16 37 H 0.40 3.78 8.95 -40.82 -0.37 3.42 16 38 H 0.08 0.82 6.80 -51.93 -0.35 0.47 16 39 H 0.08 0.53 8.05 -51.93 -0.42 0.11 16 40 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 0.78 7.92 -51.93 -0.41 0.36 16 47 H 0.09 0.56 8.02 -51.93 -0.42 0.14 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -35.76 376.32 -7.53 -43.29 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.02 Total: 7.13 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.21 Total: 2.47 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.07 Total: -48.30 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.02 Total: -25.85 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.76 -7.53 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867419559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.723 kcal (2) G-P(sol) polarization free energy of solvation -35.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds