Wall clock time and date at job start Tue Mar 31 2020 17:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 H 1.09000 * 109.47137 * 304.89804 * 3 2 1 5 5 C 1.50701 * 109.47151 * 184.90182 * 3 2 1 6 6 H 1.07994 * 120.00109 * 245.45500 * 5 3 2 7 7 C 1.37880 * 119.99893 * 65.45373 * 5 3 2 8 8 N 1.31514 * 119.99941 * 9.46693 * 7 5 3 9 9 Si 1.86799 * 119.99619 * 189.47152 * 7 5 3 10 10 H 1.48501 * 109.47131 * 84.99725 * 9 7 5 11 11 H 1.48504 * 109.46825 * 204.98920 * 9 7 5 12 12 H 1.48490 * 109.47263 * 324.98862 * 9 7 5 13 13 N 1.46500 * 109.47179 * 64.90119 * 3 2 1 14 14 C 1.34776 * 119.99940 * 275.00169 * 13 3 2 15 15 O 1.21621 * 119.99960 * 359.97438 * 14 13 3 16 16 C 1.47292 * 119.99647 * 179.97438 * 14 13 3 17 17 C 1.36580 * 127.54351 * 0.02562 * 16 14 13 18 18 O 1.34098 * 108.89855 * 179.89900 * 17 16 14 19 19 C 1.33405 * 111.28842 * 359.56612 * 18 17 16 20 20 C 1.36150 * 108.05179 * 0.79081 * 19 18 17 21 21 C 1.47706 * 122.20903 * 179.06392 * 20 19 18 22 22 O 1.21623 * 122.33575 * 223.67699 * 21 20 19 23 23 N 1.35752 * 115.33372 * 43.70167 * 21 20 19 24 24 C 1.45346 * 119.18076 * 14.35243 * 23 21 20 25 25 C 1.53456 * 113.49357 * 273.77247 * 24 23 21 26 26 C 1.52997 * 109.50047 * 284.33427 * 25 24 23 27 27 C 1.52997 * 109.37986 * 164.37901 * 25 24 23 28 28 C 1.50519 * 128.58858 * 181.06641 * 19 18 17 29 29 H 1.08997 * 109.47095 * 299.99830 * 1 2 3 30 30 H 1.08999 * 109.47083 * 60.00212 * 1 2 3 31 31 H 1.09005 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46863 * 239.99886 * 2 1 3 33 33 H 1.08998 * 109.46996 * 120.00337 * 2 1 3 34 34 H 0.96999 * 119.99931 * 180.02562 * 8 7 5 35 35 H 0.96996 * 119.99963 * 94.99761 * 13 3 2 36 36 H 1.08009 * 125.55076 * 359.89978 * 17 16 14 37 37 H 0.96999 * 120.41050 * 194.07508 * 23 21 20 38 38 H 1.09000 * 108.61559 * 34.77509 * 24 23 21 39 39 H 1.08998 * 108.60857 * 152.52756 * 24 23 21 40 40 H 1.08998 * 109.47323 * 180.10985 * 26 25 24 41 41 H 1.09007 * 109.47223 * 300.10738 * 26 25 24 42 42 H 1.08999 * 109.47299 * 60.10970 * 26 25 24 43 43 H 1.08997 * 109.47655 * 299.96826 * 27 25 24 44 44 H 1.09003 * 109.46928 * 59.96821 * 27 25 24 45 45 H 1.08998 * 109.47119 * 179.97438 * 27 25 24 46 46 H 1.08999 * 109.45407 * 229.03750 * 28 19 18 47 47 H 1.08996 * 109.45620 * 349.00264 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8429 5 6 3.5421 1.4442 -0.1214 6 1 4.1493 1.8090 0.6938 7 6 4.1412 0.9801 -1.2733 8 7 3.4096 0.7115 -2.3326 9 14 5.9919 0.7328 -1.3290 10 1 6.3289 -0.6067 -0.7836 11 1 6.4618 0.8274 -2.7345 12 1 6.6561 1.7809 -0.5134 13 7 1.6504 2.0982 1.2508 14 6 0.4329 2.6651 1.3636 15 8 -0.3421 2.6328 0.4269 16 6 0.0411 3.3239 2.6214 17 6 0.7831 3.4501 3.7611 18 8 0.0645 4.1177 4.6755 19 6 -1.1334 4.4574 4.1965 20 6 -1.2274 3.9862 2.9226 21 6 -2.4415 4.1718 2.1021 22 8 -2.9119 3.2778 1.4248 23 7 -2.9955 5.4100 2.1563 24 6 -2.2261 6.5065 2.7203 25 6 -2.3524 6.6216 4.2453 26 6 -3.7113 7.2281 4.6009 27 6 -1.2368 7.5214 4.7807 28 6 -2.2330 5.2271 4.8776 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.8310 0.3846 -3.1428 35 1 2.2687 2.1243 1.9977 36 1 1.7855 3.0736 3.9028 37 1 -3.8922 5.5618 1.8191 38 1 -1.1760 6.3613 2.4668 39 1 -2.5646 7.4382 2.2670 40 1 -3.7997 7.3114 5.6841 41 1 -3.7961 8.2179 4.1523 42 1 -4.5062 6.5870 4.2198 43 1 -0.2686 7.0895 4.5276 44 1 -1.3215 8.5112 4.3320 45 1 -1.3253 7.6046 5.8639 46 1 -3.1761 4.6934 4.7603 47 1 -2.0024 5.3281 5.9381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867419559.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:45 Heat of formation + Delta-G solvation = -94.634913 kcal Electronic energy + Delta-G solvation = -30052.640788 eV Core-core repulsion = 26007.509287 eV Total energy + Delta-G solvation = -4045.131501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.94986 -40.71376 -40.48656 -38.65137 -36.89360 -34.94311 -34.43192 -33.94742 -33.00700 -31.89584 -29.05186 -28.12732 -27.53372 -27.06531 -25.58380 -24.76807 -23.93733 -21.82153 -20.94709 -20.63839 -20.31861 -18.90180 -18.39938 -17.97705 -17.51533 -17.36848 -17.15152 -16.48078 -16.18899 -16.13511 -15.89449 -15.38611 -15.09265 -15.03609 -14.83406 -14.63355 -14.53975 -13.92544 -13.87589 -13.49800 -13.46097 -13.30938 -12.97662 -12.85890 -12.64383 -12.61755 -12.53663 -12.25909 -12.21541 -12.09505 -12.03347 -11.73523 -11.67418 -11.23025 -11.11170 -10.89182 -10.81529 -10.53290 -10.05802 -9.73774 -9.58142 -8.18674 -6.32792 0.31487 0.34522 1.45328 1.47231 1.55502 1.56637 1.72594 2.29678 2.35764 2.50461 2.58871 3.13050 3.41182 3.44543 3.62613 3.76090 3.81454 4.05043 4.10782 4.34048 4.41368 4.42992 4.45716 4.48204 4.58126 4.69460 4.70917 4.79972 4.88350 4.93417 4.94890 5.02814 5.09728 5.11119 5.19783 5.24912 5.38612 5.41476 5.49374 5.49922 5.60574 5.71362 5.77644 5.91464 5.98219 6.04899 6.07291 6.75548 6.97413 7.19425 7.33438 7.57434 8.90492 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003090 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.261111 B = 9060.680050 C = 9648.739588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C 0.280 3.720 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.079 0.921 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.260 1.260 13 N -0.696 5.696 14 C 0.560 3.440 15 O -0.572 6.572 16 C -0.216 4.216 17 C 0.044 3.956 18 O -0.146 6.146 19 C 0.060 3.940 20 C -0.232 4.232 21 C 0.584 3.416 22 O -0.557 6.557 23 N -0.715 5.715 24 C 0.110 3.890 25 C -0.068 4.068 26 C -0.137 4.137 27 C -0.140 4.140 28 C -0.034 4.034 29 H 0.038 0.962 30 H 0.019 0.981 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.259 0.741 37 H 0.411 0.589 38 H 0.053 0.947 39 H 0.110 0.890 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 16.008 22.307 28.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.176 3.824 4 H 0.016 0.984 5 C -0.586 4.586 6 H 0.097 0.903 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.796 3.204 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.184 1.184 13 N -0.346 5.346 14 C 0.347 3.653 15 O -0.452 6.452 16 C -0.221 4.221 17 C -0.026 4.026 18 O -0.039 6.039 19 C 0.007 3.993 20 C -0.237 4.237 21 C 0.372 3.628 22 O -0.435 6.435 23 N -0.368 5.368 24 C -0.015 4.015 25 C -0.069 4.069 26 C -0.194 4.194 27 C -0.198 4.198 28 C -0.071 4.071 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.239 0.761 36 H 0.274 0.726 37 H 0.248 0.752 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.115 0.885 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.655 15.501 21.422 28.149 hybrid contribution 0.725 -0.692 -1.180 1.548 sum -8.931 14.809 20.241 26.623 Atomic orbital electron populations 1.21656 0.97315 0.99020 0.99988 1.21707 0.93324 0.99269 1.00585 1.18371 0.94034 0.88781 0.81171 0.98441 1.21527 0.90829 1.43851 1.02359 0.90307 1.25847 1.03474 0.94747 0.94482 1.70165 1.37984 1.44705 1.02861 0.85368 0.78813 0.79158 0.77061 1.19498 1.21672 1.18357 1.46023 1.14650 1.56138 1.17813 1.17725 0.82174 0.78626 0.86744 1.90829 1.52364 1.60694 1.41339 1.21014 0.96296 1.08274 0.96519 1.25187 0.97895 0.94987 0.84484 1.83605 1.23601 1.56585 1.40124 1.23080 0.86411 0.97930 0.91836 1.21024 0.96300 1.08717 0.97700 1.18043 0.82920 0.82616 0.79246 1.90850 1.65820 1.45401 1.41392 1.45587 1.19872 1.07548 1.63771 1.21658 0.96056 0.89670 0.94114 1.21312 0.99030 0.93289 0.93314 1.21855 0.93322 1.01139 1.03046 1.21880 0.96214 0.99277 1.02429 1.20718 0.91341 0.93737 1.01314 0.94284 0.96180 0.93415 0.92823 0.92806 0.92668 0.76103 0.72567 0.75159 0.92857 0.87150 0.90556 0.90601 0.92634 0.93681 0.90763 0.90009 0.88457 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.17 8.51 71.98 0.61 -5.56 16 2 C -0.11 -5.65 5.50 30.59 0.17 -5.48 16 3 C 0.28 14.94 2.11 44.25 0.09 15.03 16 4 H 0.00 -0.15 7.52 -2.39 -0.02 -0.17 16 5 C -0.55 -29.15 8.66 25.60 0.22 -28.93 16 6 H 0.08 3.82 7.74 -2.91 -0.02 3.79 16 7 C 0.01 0.81 5.16 84.66 0.44 1.25 16 8 N -0.92 -54.67 12.16 21.45 0.26 -54.41 16 9 Si 0.97 42.19 29.55 68.60 2.03 44.21 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 13 N -0.70 -30.16 5.01 -449.50 -2.25 -32.41 16 14 C 0.56 25.38 6.37 86.62 0.55 25.94 16 15 O -0.57 -32.06 12.91 4.55 0.06 -32.00 16 16 C -0.22 -7.47 6.32 -19.21 -0.12 -7.59 16 17 C 0.04 0.99 11.61 67.43 0.78 1.78 16 18 O -0.15 -2.94 10.48 7.81 0.08 -2.86 16 19 C 0.06 1.30 5.99 25.14 0.15 1.45 16 20 C -0.23 -7.43 4.98 -19.18 -0.10 -7.52 16 21 C 0.58 20.66 7.29 86.59 0.63 21.30 16 22 O -0.56 -26.29 17.12 4.54 0.08 -26.22 16 23 N -0.71 -16.41 5.25 -466.40 -2.45 -18.86 16 24 C 0.11 1.73 4.77 86.75 0.41 2.14 16 25 C -0.07 -0.66 0.74 -51.83 -0.04 -0.70 16 26 C -0.14 -0.74 8.35 71.98 0.60 -0.14 16 27 C -0.14 -1.06 8.24 71.98 0.59 -0.47 16 28 C -0.03 -0.44 4.46 29.99 0.13 -0.30 16 29 H 0.04 1.98 5.65 -2.39 -0.01 1.96 16 30 H 0.02 1.09 7.84 -2.39 -0.02 1.07 16 31 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.05 3.03 6.80 -2.38 -0.02 3.01 16 33 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.40 13.80 7.53 -92.71 -0.70 13.10 16 36 H 0.26 3.52 7.49 -2.91 -0.02 3.50 16 37 H 0.41 7.84 8.95 -92.71 -0.83 7.01 16 38 H 0.05 1.12 6.80 -2.39 -0.02 1.11 16 39 H 0.11 1.15 8.05 -2.39 -0.02 1.13 16 40 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.04 0.50 7.86 -2.39 -0.02 0.48 16 44 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.10 1.32 7.92 -2.39 -0.02 1.30 16 47 H 0.12 0.89 8.02 -2.39 -0.02 0.87 16 Total: -1.00 -86.79 376.32 2.42 -84.37 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.52 Total: 25.99 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: 5.14 Total: 12.18 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -4.44 Total: -105.68 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: 0.22 Total: -61.08 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -86.79 2.42 -84.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867419559.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.267 kcal (2) G-P(sol) polarization free energy of solvation -86.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds