Wall clock time and date at job start Tue Mar 31 2020 17:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 H 1.08994 * 109.50879 * 57.37198 * 3 2 1 5 5 C 1.53100 * 109.50373 * 297.29199 * 3 2 1 6 6 O 1.43012 * 109.25935 * 183.21758 * 5 3 2 7 7 C 1.43019 * 113.74069 * 58.66912 * 6 5 3 8 8 C 1.53093 * 109.25453 * 301.33094 * 7 6 5 9 9 N 1.47012 * 109.50795 * 177.51022 * 3 2 1 10 10 C 1.46897 * 110.99779 * 302.32323 * 9 3 2 11 11 C 1.53000 * 109.47162 * 166.74571 * 10 9 3 12 12 N 1.46495 * 109.47429 * 179.97438 * 11 10 9 13 13 S 1.65601 * 120.00197 * 164.99590 * 12 11 10 14 14 O 1.42095 * 104.27815 * 181.07325 * 13 12 11 15 15 O 1.42097 * 104.27879 * 308.93617 * 13 12 11 16 16 C 1.81401 * 104.44765 * 65.00320 * 13 12 11 17 17 C 1.52998 * 109.47202 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.47157 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47007 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00032 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99680 * 179.97438 * 19 18 17 22 22 N 1.31520 * 120.00087 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00297 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47445 * 89.99851 * 23 21 19 25 25 H 1.48508 * 109.47222 * 209.99932 * 23 21 19 26 26 H 1.48504 * 109.46873 * 329.99355 * 23 21 19 27 27 H 1.08989 * 109.47548 * 62.05836 * 1 2 3 28 28 H 1.09006 * 109.46861 * 302.05562 * 1 2 3 29 29 H 1.09003 * 109.46943 * 182.06563 * 1 2 3 30 30 H 1.09003 * 109.47316 * 119.99808 * 2 1 3 31 31 H 1.08995 * 109.47326 * 239.99725 * 2 1 3 32 32 H 1.09006 * 109.50483 * 303.14881 * 5 3 2 33 33 H 1.08994 * 109.51106 * 63.27736 * 5 3 2 34 34 H 1.08994 * 109.50386 * 61.26398 * 7 6 5 35 35 H 1.08995 * 109.50832 * 181.39943 * 7 6 5 36 36 H 1.09004 * 109.50741 * 176.78737 * 8 7 6 37 37 H 1.09002 * 109.51046 * 296.86685 * 8 7 6 38 38 H 1.09002 * 109.47240 * 286.74350 * 10 9 3 39 39 H 1.08994 * 109.47229 * 46.74160 * 10 9 3 40 40 H 1.09002 * 109.46863 * 300.00011 * 11 10 9 41 41 H 1.09003 * 109.47262 * 59.99416 * 11 10 9 42 42 H 0.96998 * 120.00020 * 345.00001 * 12 11 10 43 43 H 1.09004 * 109.47426 * 300.00146 * 16 13 12 44 44 H 1.09002 * 109.47281 * 59.99890 * 16 13 12 45 45 H 1.09000 * 109.47356 * 299.99690 * 17 16 13 46 46 H 1.09001 * 109.47156 * 60.00248 * 17 16 13 47 47 H 1.09000 * 109.46608 * 299.99993 * 18 17 16 48 48 H 1.09001 * 109.47012 * 60.00005 * 18 17 16 49 49 H 0.96992 * 120.00256 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6391 1.9703 0.8652 5 6 1.5866 2.1450 -1.2825 6 8 2.1285 3.4681 -1.3125 7 6 3.5571 3.5066 -1.2560 8 6 4.0304 2.8179 0.0267 9 7 3.5089 1.4438 0.0602 10 6 3.9876 0.7278 1.2502 11 6 5.4882 0.4612 1.1158 12 7 5.9658 -0.2522 2.3028 13 16 7.4446 -0.9972 2.2820 14 8 7.5549 -1.5932 3.5672 15 8 7.4196 -1.7930 1.1050 16 6 8.6335 0.3616 2.1063 17 6 10.0543 -0.2049 2.0736 18 6 11.0571 0.9413 1.9261 19 6 12.4567 0.3833 1.8945 20 1 12.6151 -0.6822 1.9714 21 6 13.5348 1.2331 1.7663 22 7 14.7562 0.7462 1.7382 23 14 13.2608 3.0761 1.6325 24 1 13.2651 3.6771 2.9903 25 1 14.3473 3.6804 0.8202 26 1 11.9522 3.3358 0.9802 27 1 -0.3634 0.4815 -0.9077 28 1 -0.3633 0.5455 0.8710 29 1 -0.3633 -1.0270 0.0370 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.9419 1.5865 -2.1485 33 1 0.4981 2.1969 -1.3038 34 1 3.9696 2.9877 -2.1212 35 1 3.8936 4.5433 -1.2579 36 1 5.1200 2.7944 0.0464 37 1 3.6627 3.3686 0.8926 38 1 3.8044 1.3342 2.1373 39 1 3.4570 -0.2198 1.3420 40 1 5.6714 -0.1452 0.2287 41 1 6.0188 1.4089 1.0239 42 1 5.4158 -0.2884 3.1009 43 1 8.4359 0.8998 1.1793 44 1 8.5332 1.0436 2.9507 45 1 10.2523 -0.7432 3.0005 46 1 10.1543 -0.8865 1.2289 47 1 10.8593 1.4801 0.9994 48 1 10.9570 1.6226 2.7710 49 1 15.5147 1.3440 1.6483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872643211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:24 Heat of formation + Delta-G solvation = -125.949821 kcal Electronic energy + Delta-G solvation = -27294.597290 eV Core-core repulsion = 23383.551824 eV Total energy + Delta-G solvation = -3911.045466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37352 -37.23312 -36.90553 -35.85511 -35.47813 -34.83624 -34.07998 -32.23212 -30.26068 -29.29855 -28.40357 -26.22693 -25.28013 -23.64225 -22.55479 -22.10826 -20.61989 -20.41571 -19.30627 -17.62676 -17.22131 -16.94049 -16.68714 -16.42387 -16.06195 -15.85313 -15.39695 -15.16387 -15.00040 -14.83237 -14.30299 -14.22398 -14.03850 -13.92286 -13.44873 -13.06915 -12.94119 -12.46378 -12.37841 -12.20423 -12.17265 -12.04758 -11.95594 -11.87991 -11.81023 -11.70563 -11.58481 -11.27676 -11.23488 -11.01260 -10.96845 -10.80598 -10.11608 -10.00751 -9.94754 -9.83624 -9.42157 -9.27119 -8.89111 -8.60315 -6.09816 -4.09220 0.35186 2.66044 3.25021 3.28867 3.32634 3.34333 3.43923 3.85431 4.18950 4.27723 4.36448 4.38392 4.38707 4.57331 4.65927 4.67087 4.74685 4.86266 4.91878 4.94979 4.96550 5.03752 5.07006 5.16336 5.22982 5.24097 5.28315 5.32548 5.40392 5.44744 5.51960 5.57689 5.67156 5.71285 5.75744 5.79545 6.11732 6.23819 6.44707 6.47706 6.64532 6.72068 6.77566 7.10287 7.24384 7.69370 8.46101 8.94600 9.51144 11.03463 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002501 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.407157 B =11191.431927 C =12777.236304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.050 3.950 4 H 0.051 0.949 5 C 0.068 3.932 6 O -0.386 6.386 7 C 0.062 3.938 8 C 0.012 3.988 9 N -0.531 5.531 10 C 0.044 3.956 11 C 0.117 3.883 12 N -1.125 6.125 13 S 2.605 3.395 14 O -0.961 6.961 15 O -0.957 6.957 16 C -0.615 4.615 17 C -0.098 4.098 18 C -0.004 4.004 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.881 3.119 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.414 0.586 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.020 0.980 48 H 0.015 0.985 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.814 4.099 -3.581 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.059 4.059 4 H 0.069 0.931 5 C -0.009 4.009 6 O -0.305 6.305 7 C -0.015 4.015 8 C -0.116 4.116 9 N -0.256 5.256 10 C -0.085 4.085 11 C -0.010 4.010 12 N -0.884 5.884 13 S 2.700 3.300 14 O -0.951 6.951 15 O -0.947 6.947 16 C -0.747 4.747 17 C -0.137 4.137 18 C -0.043 4.043 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.135 4.135 22 N -0.538 5.538 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.191 1.191 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.247 0.753 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -30.330 3.138 -4.140 30.772 hybrid contribution -0.155 1.957 1.060 2.231 sum -30.485 5.094 -3.081 31.061 Atomic orbital electron populations 1.21814 0.95173 1.02206 1.01976 1.21649 0.95887 0.94974 1.03476 1.22353 0.87383 0.97319 0.98797 0.93105 1.22778 0.98796 0.83218 0.96129 1.87996 1.20563 1.27207 1.94697 1.22696 0.80974 1.01236 0.96578 1.22923 1.01516 0.88547 0.98629 1.62103 1.08547 1.15145 1.39855 1.22363 0.95247 0.99792 0.91136 1.21229 0.94757 0.96882 0.88090 1.55693 1.37209 1.73222 1.22262 1.05180 0.74187 0.76312 0.74274 1.93589 1.85567 1.74696 1.41248 1.93581 1.85496 1.65497 1.50155 1.30596 1.14020 1.18824 1.11237 1.21318 0.88783 1.00771 1.02851 1.19531 0.94579 0.93533 0.96649 1.21131 0.88682 0.95891 1.50803 0.90713 1.25032 0.95066 0.98847 0.94510 1.69909 0.98174 1.35384 1.50372 0.86769 0.78138 0.85855 0.78438 1.20256 1.21258 1.19072 0.92362 0.92669 0.92149 0.91132 0.90551 0.92039 0.88327 0.91899 0.88242 0.88909 0.93662 0.93834 0.89023 0.89041 0.91826 0.75297 0.85519 0.85314 0.90965 0.90893 0.96183 0.96644 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.57 37.16 0.36 -0.35 16 2 C -0.12 -0.71 5.25 -26.73 -0.14 -0.85 16 3 C 0.05 0.34 2.08 -67.60 -0.14 0.20 16 4 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 5 C 0.07 0.47 5.91 37.21 0.22 0.69 16 6 O -0.39 -3.42 10.83 -35.23 -0.38 -3.81 16 7 C 0.06 0.45 7.01 37.21 0.26 0.71 16 8 C 0.01 0.08 5.46 -3.71 -0.02 0.06 16 9 N -0.53 -4.01 4.51 -226.34 -1.02 -5.03 16 10 C 0.04 0.31 4.93 -3.83 -0.02 0.30 16 11 C 0.12 1.00 6.14 -4.04 -0.02 0.97 16 12 N -1.13 -10.59 5.89 -10.61 -0.06 -10.66 16 13 S 2.61 35.41 5.46 -107.50 -0.59 34.82 16 14 O -0.96 -16.01 18.08 -57.54 -1.04 -17.05 16 15 O -0.96 -16.05 17.50 -57.54 -1.01 -17.06 16 16 C -0.62 -8.52 6.07 37.16 0.23 -8.29 16 17 C -0.10 -1.87 5.16 -26.73 -0.14 -2.01 16 18 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 19 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 20 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 21 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 22 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 23 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 27 H 0.06 0.23 6.68 -51.94 -0.35 -0.11 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.41 5.97 -51.93 -0.31 0.10 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.54 6.72 -51.93 -0.35 0.19 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.60 6.52 -51.93 -0.34 0.26 16 37 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 39 H 0.09 0.63 5.58 -51.93 -0.29 0.34 16 40 H 0.09 0.89 7.70 -51.93 -0.40 0.49 16 41 H 0.06 0.46 6.63 -51.93 -0.34 0.12 16 42 H 0.41 3.10 8.62 -34.47 -0.30 2.80 16 43 H 0.13 1.49 8.14 -51.92 -0.42 1.07 16 44 H 0.13 1.53 8.14 -51.92 -0.42 1.11 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 48 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -36.02 392.44 -10.57 -46.59 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.52 Total: -1.31 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 0.04 Total: -22.18 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.31 Total: -42.52 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -2.43 Total: -37.92 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Atomic # 16 Polarization: 35.41 SS G_CDS: -0.59 Total: 34.82 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.02 -10.57 -46.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872643211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.362 kcal (2) G-P(sol) polarization free energy of solvation -36.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds