Wall clock time and date at job start Tue Mar 31 2020 17:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 H 1.08994 * 109.50879 * 57.37198 * 3 2 1 5 5 C 1.53100 * 109.50373 * 297.29199 * 3 2 1 6 6 O 1.43012 * 109.25935 * 183.21758 * 5 3 2 7 7 C 1.43019 * 113.74069 * 58.66912 * 6 5 3 8 8 C 1.53093 * 109.25453 * 301.33094 * 7 6 5 9 9 N 1.47012 * 109.50795 * 177.51022 * 3 2 1 10 10 C 1.46897 * 110.99779 * 302.32323 * 9 3 2 11 11 C 1.53000 * 109.47162 * 166.74571 * 10 9 3 12 12 N 1.46495 * 109.47429 * 179.97438 * 11 10 9 13 13 S 1.65601 * 120.00197 * 164.99590 * 12 11 10 14 14 O 1.42095 * 104.27815 * 181.07325 * 13 12 11 15 15 O 1.42097 * 104.27879 * 308.93617 * 13 12 11 16 16 C 1.81401 * 104.44765 * 65.00320 * 13 12 11 17 17 C 1.52998 * 109.47202 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.47157 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47007 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00032 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99680 * 179.97438 * 19 18 17 22 22 N 1.31520 * 120.00087 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00297 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47445 * 89.99851 * 23 21 19 25 25 H 1.48508 * 109.47222 * 209.99932 * 23 21 19 26 26 H 1.48504 * 109.46873 * 329.99355 * 23 21 19 27 27 H 1.08989 * 109.47548 * 62.05836 * 1 2 3 28 28 H 1.09006 * 109.46861 * 302.05562 * 1 2 3 29 29 H 1.09003 * 109.46943 * 182.06563 * 1 2 3 30 30 H 1.09003 * 109.47316 * 119.99808 * 2 1 3 31 31 H 1.08995 * 109.47326 * 239.99725 * 2 1 3 32 32 H 1.09006 * 109.50483 * 303.14881 * 5 3 2 33 33 H 1.08994 * 109.51106 * 63.27736 * 5 3 2 34 34 H 1.08994 * 109.50386 * 61.26398 * 7 6 5 35 35 H 1.08995 * 109.50832 * 181.39943 * 7 6 5 36 36 H 1.09004 * 109.50741 * 176.78737 * 8 7 6 37 37 H 1.09002 * 109.51046 * 296.86685 * 8 7 6 38 38 H 1.09002 * 109.47240 * 286.74350 * 10 9 3 39 39 H 1.08994 * 109.47229 * 46.74160 * 10 9 3 40 40 H 1.09002 * 109.46863 * 300.00011 * 11 10 9 41 41 H 1.09003 * 109.47262 * 59.99416 * 11 10 9 42 42 H 0.96998 * 120.00020 * 345.00001 * 12 11 10 43 43 H 1.09004 * 109.47426 * 300.00146 * 16 13 12 44 44 H 1.09002 * 109.47281 * 59.99890 * 16 13 12 45 45 H 1.09000 * 109.47356 * 299.99690 * 17 16 13 46 46 H 1.09001 * 109.47156 * 60.00248 * 17 16 13 47 47 H 1.09000 * 109.46608 * 299.99993 * 18 17 16 48 48 H 1.09001 * 109.47012 * 60.00005 * 18 17 16 49 49 H 0.96992 * 120.00256 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6391 1.9703 0.8652 5 6 1.5866 2.1450 -1.2825 6 8 2.1285 3.4681 -1.3125 7 6 3.5571 3.5066 -1.2560 8 6 4.0304 2.8179 0.0267 9 7 3.5089 1.4438 0.0602 10 6 3.9876 0.7278 1.2502 11 6 5.4882 0.4612 1.1158 12 7 5.9658 -0.2522 2.3028 13 16 7.4446 -0.9972 2.2820 14 8 7.5549 -1.5932 3.5672 15 8 7.4196 -1.7930 1.1050 16 6 8.6335 0.3616 2.1063 17 6 10.0543 -0.2049 2.0736 18 6 11.0571 0.9413 1.9261 19 6 12.4567 0.3833 1.8945 20 1 12.6151 -0.6822 1.9714 21 6 13.5348 1.2331 1.7663 22 7 14.7562 0.7462 1.7382 23 14 13.2608 3.0761 1.6325 24 1 13.2651 3.6771 2.9903 25 1 14.3473 3.6804 0.8202 26 1 11.9522 3.3358 0.9802 27 1 -0.3634 0.4815 -0.9077 28 1 -0.3633 0.5455 0.8710 29 1 -0.3633 -1.0270 0.0370 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.9419 1.5865 -2.1485 33 1 0.4981 2.1969 -1.3038 34 1 3.9696 2.9877 -2.1212 35 1 3.8936 4.5433 -1.2579 36 1 5.1200 2.7944 0.0464 37 1 3.6627 3.3686 0.8926 38 1 3.8044 1.3342 2.1373 39 1 3.4570 -0.2198 1.3420 40 1 5.6714 -0.1452 0.2287 41 1 6.0188 1.4089 1.0239 42 1 5.4158 -0.2884 3.1009 43 1 8.4359 0.8998 1.1793 44 1 8.5332 1.0436 2.9507 45 1 10.2523 -0.7432 3.0005 46 1 10.1543 -0.8865 1.2289 47 1 10.8593 1.4801 0.9994 48 1 10.9570 1.6226 2.7710 49 1 15.5147 1.3440 1.6483 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872643211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:24 Heat of formation + Delta-G solvation = -155.187466 kcal Electronic energy + Delta-G solvation = -27295.865129 eV Core-core repulsion = 23383.551824 eV Total energy + Delta-G solvation = -3912.313305 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90837 -38.23872 -37.73018 -37.05633 -36.50109 -36.11520 -34.64052 -34.24571 -30.77879 -30.15486 -29.86901 -26.82985 -25.75691 -25.39005 -23.16531 -22.59750 -22.24878 -21.03315 -20.33605 -18.98161 -18.62566 -17.86011 -17.39624 -17.27136 -17.12187 -16.55160 -16.35960 -16.13851 -15.90878 -15.65121 -15.44027 -15.29913 -14.86630 -14.71323 -14.45222 -14.06674 -13.90179 -13.68111 -13.57614 -13.28846 -13.23275 -13.18117 -13.08789 -12.69862 -12.65161 -12.60425 -12.54485 -12.52813 -12.17877 -11.84249 -11.81017 -11.72022 -11.63890 -11.41005 -11.32217 -11.26858 -10.77390 -10.55971 -10.34718 -9.42606 -8.29641 -6.35707 -0.74880 1.36961 1.39721 1.51252 1.73753 2.36567 2.69141 2.79182 2.93605 3.05454 3.24751 3.68375 3.70722 3.79543 3.86903 3.94197 4.03270 4.13315 4.16232 4.26117 4.34168 4.38141 4.43102 4.48707 4.52972 4.58200 4.63313 4.71771 4.77987 4.83429 4.85643 4.86517 4.91600 4.96361 5.01949 5.06286 5.21165 5.26968 5.34670 5.38846 5.46495 5.62874 5.91516 5.95475 6.10388 6.19055 6.25452 6.72737 7.28908 8.87328 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014323 B = 0.002501 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.407157 B =11191.431927 C =12777.236304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.053 3.947 4 H 0.047 0.953 5 C 0.066 3.934 6 O -0.405 6.405 7 C 0.059 3.941 8 C 0.011 3.989 9 N -0.540 5.540 10 C 0.047 3.953 11 C 0.111 3.889 12 N -1.108 6.108 13 S 2.628 3.372 14 O -0.994 6.994 15 O -0.992 6.992 16 C -0.609 4.609 17 C -0.105 4.105 18 C -0.005 4.005 19 C -0.544 4.544 20 H 0.029 0.971 21 C -0.001 4.001 22 N -0.953 5.953 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.236 1.236 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.044 0.956 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.426 0.574 43 H 0.155 0.845 44 H 0.157 0.843 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.194 6.609 -3.541 34.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.055 4.055 4 H 0.065 0.935 5 C -0.011 4.011 6 O -0.324 6.324 7 C -0.018 4.018 8 C -0.117 4.117 9 N -0.266 5.266 10 C -0.082 4.082 11 C -0.016 4.016 12 N -0.870 5.870 13 S 2.723 3.277 14 O -0.984 6.984 15 O -0.982 6.982 16 C -0.740 4.740 17 C -0.144 4.144 18 C -0.044 4.044 19 C -0.582 4.582 20 H 0.047 0.953 21 C -0.198 4.198 22 N -0.593 5.593 23 Si 0.779 3.221 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.159 1.159 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.262 0.738 43 H 0.173 0.827 44 H 0.175 0.825 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -32.741 5.625 -4.090 33.472 hybrid contribution 0.579 1.088 1.028 1.605 sum -32.162 6.713 -3.062 32.997 Atomic orbital electron populations 1.21798 0.94251 1.02524 1.02360 1.21620 0.96682 0.94286 1.03078 1.22333 0.87021 0.97700 0.98462 0.93505 1.22877 0.99518 0.82594 0.96099 1.87968 1.21468 1.28211 1.94790 1.22807 0.80328 1.02058 0.96620 1.22956 1.02034 0.88247 0.98416 1.62102 1.08989 1.15485 1.40056 1.22315 0.94273 1.00142 0.91503 1.21403 0.95944 0.97289 0.86922 1.55207 1.35583 1.72930 1.23269 1.04234 0.74740 0.75996 0.72714 1.93542 1.86406 1.75862 1.42634 1.93541 1.86291 1.67001 1.51389 1.30498 1.10157 1.19279 1.14111 1.21185 0.91466 0.99627 1.02134 1.19509 0.92208 0.94927 0.97720 1.21568 0.92054 0.94186 1.50397 0.95272 1.26142 0.94475 1.05153 0.94000 1.70088 0.99479 1.37677 1.52076 0.85575 0.79318 0.78101 0.79144 1.19040 1.21232 1.15928 0.91808 0.92470 0.91865 0.91179 0.91251 0.92346 0.87116 0.92185 0.87043 0.87971 0.93760 0.92741 0.88887 0.90293 0.89783 0.73808 0.82719 0.82502 0.91942 0.91871 0.94830 0.95070 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.57 71.98 0.69 -0.46 16 2 C -0.12 -1.20 5.25 30.59 0.16 -1.04 16 3 C 0.05 0.64 2.08 44.93 0.09 0.73 16 4 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 5 C 0.07 0.82 5.91 72.02 0.43 1.25 16 6 O -0.41 -6.62 10.83 -148.98 -1.61 -8.23 16 7 C 0.06 0.74 7.01 72.01 0.50 1.25 16 8 C 0.01 0.13 5.46 86.31 0.47 0.61 16 9 N -0.54 -7.05 4.51 -870.02 -3.93 -10.98 16 10 C 0.05 0.56 4.93 86.30 0.43 0.98 16 11 C 0.11 1.57 6.14 86.38 0.53 2.10 16 12 N -1.11 -17.93 5.89 -187.49 -1.10 -19.03 16 13 S 2.63 67.22 5.46 -56.49 -0.31 66.91 16 14 O -0.99 -32.21 18.08 -127.65 -2.31 -34.51 16 15 O -0.99 -32.57 17.50 -127.65 -2.23 -34.80 16 16 C -0.61 -15.01 6.07 71.98 0.44 -14.58 16 17 C -0.10 -3.91 5.16 30.60 0.16 -3.76 16 18 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 19 C -0.54 -31.36 9.66 25.60 0.25 -31.12 16 20 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 21 C 0.00 -0.07 5.47 84.65 0.46 0.40 16 22 N -0.95 -60.06 13.96 21.45 0.30 -59.76 16 23 Si 0.96 42.78 27.47 68.60 1.88 44.67 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.24 -9.37 6.54 99.48 0.65 -8.72 16 27 H 0.06 0.41 6.68 -2.39 -0.02 0.39 16 28 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.71 5.97 -2.39 -0.01 0.70 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.11 1.05 6.72 -2.39 -0.02 1.03 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.10 0.99 6.52 -2.39 -0.02 0.97 16 37 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.05 0.55 8.08 -2.39 -0.02 0.53 16 39 H 0.09 1.08 5.58 -2.39 -0.01 1.07 16 40 H 0.08 1.37 7.70 -2.39 -0.02 1.35 16 41 H 0.08 0.87 6.63 -2.39 -0.02 0.86 16 42 H 0.43 5.18 8.62 -96.75 -0.83 4.35 16 43 H 0.15 2.97 8.14 -2.39 -0.02 2.95 16 44 H 0.16 3.03 8.14 -2.39 -0.02 3.01 16 45 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 46 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 48 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 49 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -79.70 392.44 -4.54 -84.24 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.04 Total: 15.24 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 4.73 Total: -43.74 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -4.73 Total: -89.76 kcal Atomic # 8 Polarization: -71.39 SS G_CDS: -6.15 Total: -77.55 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 16 Polarization: 67.22 SS G_CDS: -0.31 Total: 66.91 kcal Total: -79.70 -4.54 -84.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872643211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.950 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds