Wall clock time and date at job start Tue Mar 31 2020 17:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47288 * 2 1 4 4 H 1.09004 * 109.54476 * 305.42454 * 3 2 1 5 5 C 1.53098 * 109.51086 * 65.53621 * 3 2 1 6 6 O 1.43014 * 109.25869 * 176.78249 * 5 3 2 7 7 C 1.43014 * 113.74146 * 301.32926 * 6 5 3 8 8 C 1.53101 * 109.25705 * 58.67049 * 7 6 5 9 9 N 1.47012 * 109.25776 * 303.15491 * 8 7 6 10 10 C 1.46907 * 110.99817 * 182.39170 * 9 8 7 11 11 C 1.52999 * 109.47289 * 52.06712 * 10 9 8 12 12 N 1.46490 * 109.47041 * 180.02562 * 11 10 9 13 13 S 1.65605 * 120.00046 * 164.99985 * 12 11 10 14 14 O 1.42095 * 104.27858 * 181.06644 * 13 12 11 15 15 O 1.42096 * 104.27764 * 308.92462 * 13 12 11 16 16 C 1.81402 * 104.44946 * 64.99706 * 13 12 11 17 17 C 1.52998 * 109.47090 * 180.02562 * 16 13 12 18 18 C 1.53001 * 109.47075 * 179.97438 * 17 16 13 19 19 C 1.50702 * 109.47192 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99810 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00145 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00032 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99794 * 0.02562 * 21 19 18 24 24 H 1.48508 * 109.46999 * 89.99897 * 23 21 19 25 25 H 1.48502 * 109.46836 * 209.99233 * 23 21 19 26 26 H 1.48496 * 109.47262 * 329.99613 * 23 21 19 27 27 H 1.09004 * 109.47172 * 54.25395 * 1 2 3 28 28 H 1.08996 * 109.47392 * 174.25601 * 1 2 3 29 29 H 1.09006 * 109.47287 * 294.25504 * 1 2 3 30 30 H 1.09002 * 109.46944 * 239.99232 * 2 1 3 31 31 H 1.08998 * 109.46708 * 119.99731 * 2 1 3 32 32 H 1.08997 * 109.50492 * 296.71748 * 5 3 2 33 33 H 1.08996 * 109.50422 * 56.85228 * 5 3 2 34 34 H 1.09003 * 109.51019 * 178.60547 * 7 6 5 35 35 H 1.08998 * 109.50684 * 298.69293 * 7 6 5 36 36 H 1.09002 * 109.50950 * 183.21706 * 8 7 6 37 37 H 1.09001 * 109.50618 * 63.08835 * 8 7 6 38 38 H 1.09002 * 109.46685 * 292.06520 * 10 9 8 39 39 H 1.09004 * 109.46832 * 172.06369 * 10 9 8 40 40 H 1.09004 * 109.47124 * 59.99543 * 11 10 9 41 41 H 1.09001 * 109.46510 * 299.99961 * 11 10 9 42 42 H 0.97001 * 120.00254 * 344.99517 * 12 11 10 43 43 H 1.08996 * 109.47207 * 300.00055 * 16 13 12 44 44 H 1.08999 * 109.47088 * 60.00153 * 16 13 12 45 45 H 1.08996 * 109.46926 * 299.99965 * 17 16 13 46 46 H 1.08999 * 109.47244 * 59.99986 * 17 16 13 47 47 H 1.08996 * 109.47269 * 299.99821 * 18 17 16 48 48 H 1.08999 * 109.47042 * 59.99929 * 18 17 16 49 49 H 0.97001 * 119.99867 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6002 1.9847 -0.8371 5 6 1.6471 2.1237 1.3135 6 8 2.1903 3.4463 1.3398 7 6 3.6147 3.4863 1.2176 8 6 4.0276 2.8188 -0.0969 9 7 3.5045 1.4453 -0.1285 10 6 3.9271 0.7490 -1.3511 11 6 5.4449 0.8650 -1.5054 12 7 5.8661 0.1712 -2.7249 13 16 7.3773 0.4361 -3.3483 14 8 7.4197 -0.3686 -4.5186 15 8 7.4804 1.8511 -3.4280 16 6 8.5075 -0.2144 -2.0873 17 6 9.9530 -0.0252 -2.5515 18 6 10.9063 -0.5733 -1.4877 19 6 12.3301 -0.3874 -1.9452 20 1 12.5346 0.0757 -2.8993 21 6 13.3717 -0.8077 -1.1455 22 7 14.6141 -0.6460 -1.5451 23 14 13.0179 -1.6081 0.5049 24 1 12.8905 -3.0768 0.3255 25 1 14.1312 -1.3189 1.4440 26 1 11.7508 -1.0651 1.0569 27 1 -0.3634 0.6004 -0.8341 28 1 -0.3634 -1.0224 -0.1028 29 1 -0.3634 0.4222 0.9370 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5607 2.1749 1.3861 33 1 2.0421 1.5513 2.1528 34 1 3.9514 4.5230 1.2209 35 1 4.0669 2.9541 2.0545 36 1 5.1151 2.7959 -0.1677 37 1 3.6195 3.3831 -0.9355 38 1 3.4385 1.2014 -2.2141 39 1 3.6479 -0.3026 -1.2853 40 1 5.9335 0.4127 -0.6424 41 1 5.7240 1.9166 -1.5712 42 1 5.2599 -0.4434 -3.1673 43 1 8.3541 0.3214 -1.1506 44 1 8.3103 -1.2756 -1.9353 45 1 10.1068 -0.5607 -3.4883 46 1 10.1500 1.0361 -2.7032 47 1 10.7524 -0.0373 -0.5511 48 1 10.7095 -1.6345 -1.3356 49 1 15.3469 -0.9413 -0.9822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872643212.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:27 Heat of formation + Delta-G solvation = -126.033548 kcal Electronic energy + Delta-G solvation = -27309.503349 eV Core-core repulsion = 23398.454253 eV Total energy + Delta-G solvation = -3911.049097 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.38522 -37.26957 -36.92319 -35.87869 -35.51260 -34.83853 -34.03463 -32.23267 -30.24603 -29.29638 -28.40492 -26.32906 -25.21495 -23.64448 -22.67712 -21.98765 -20.60586 -20.40073 -19.35560 -17.67702 -17.17697 -16.92035 -16.70217 -16.40248 -16.06835 -15.83107 -15.50400 -15.21108 -14.92608 -14.80042 -14.35024 -14.21029 -14.03781 -13.93056 -13.42595 -12.97315 -12.92834 -12.59687 -12.35659 -12.21538 -12.17043 -12.12139 -11.97779 -11.91933 -11.86299 -11.69955 -11.60621 -11.28747 -11.12376 -11.00149 -10.96259 -10.82074 -10.11617 -9.99699 -9.96778 -9.84569 -9.43997 -9.27168 -8.87096 -8.60135 -6.09709 -4.09128 0.33378 2.64644 3.25611 3.29237 3.33307 3.35147 3.45580 3.83049 4.20193 4.25845 4.32633 4.37691 4.39081 4.59369 4.63689 4.68193 4.76892 4.89210 4.90499 4.94084 4.96345 5.02776 5.06276 5.16845 5.23063 5.24612 5.27685 5.32537 5.40671 5.45058 5.51106 5.54502 5.66390 5.69026 5.73719 5.77938 6.11299 6.23756 6.43794 6.47025 6.64360 6.73373 6.75935 7.10635 7.24602 7.69509 8.46117 8.94602 9.51313 11.03545 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002428 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.882658 B =11528.908280 C =12381.607461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.049 3.951 4 H 0.052 0.948 5 C 0.069 3.931 6 O -0.386 6.386 7 C 0.063 3.937 8 C 0.006 3.994 9 N -0.530 5.530 10 C 0.047 3.953 11 C 0.111 3.889 12 N -1.125 6.125 13 S 2.605 3.395 14 O -0.960 6.960 15 O -0.960 6.960 16 C -0.614 4.614 17 C -0.098 4.098 18 C -0.004 4.004 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.067 3.933 22 N -0.900 5.900 23 Si 0.881 3.119 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.414 0.586 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.020 0.980 48 H 0.016 0.984 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.529 2.907 5.709 31.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.060 4.060 4 H 0.070 0.930 5 C -0.009 4.009 6 O -0.304 6.304 7 C -0.014 4.014 8 C -0.122 4.122 9 N -0.256 5.256 10 C -0.082 4.082 11 C -0.016 4.016 12 N -0.883 5.883 13 S 2.700 3.300 14 O -0.950 6.950 15 O -0.950 6.950 16 C -0.746 4.746 17 C -0.137 4.137 18 C -0.043 4.043 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.134 4.134 22 N -0.538 5.538 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.248 0.752 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.038 0.962 48 H 0.034 0.966 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -29.974 3.354 5.433 30.646 hybrid contribution -0.322 -0.916 0.580 1.131 sum -30.296 2.438 6.013 30.983 Atomic orbital electron populations 1.21813 0.95210 1.02148 1.02010 1.21597 0.95863 0.94985 1.03314 1.22400 0.87457 0.97322 0.98777 0.93019 1.22755 0.98961 0.83388 0.95747 1.87997 1.21059 1.27242 1.94149 1.22706 0.81160 1.01437 0.96124 1.22987 1.01860 0.88671 0.98635 1.62227 1.10147 1.16002 1.37251 1.22323 0.94525 1.00399 0.90909 1.21383 0.95689 0.97865 0.86660 1.55683 1.33903 1.59500 1.39246 1.05196 0.73977 0.74979 0.75856 1.93591 1.85572 1.71111 1.44756 1.93573 1.85498 1.29604 1.86303 1.30587 1.13295 1.13037 1.17671 1.21319 0.88310 1.02623 1.01474 1.19530 0.94906 0.95823 0.94040 1.21131 0.88527 1.40540 1.06336 0.90735 1.25030 0.94968 0.95368 0.98078 1.69910 0.98539 1.47446 1.37952 0.86771 0.78207 0.80035 0.84205 1.20228 1.21268 1.19039 0.92629 0.92202 0.92413 0.91245 0.90731 0.88396 0.92123 0.88148 0.91969 0.88539 0.93442 0.93743 0.89268 0.90565 0.89989 0.75200 0.85471 0.85195 0.90963 0.90938 0.96162 0.96605 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.54 37.16 0.35 -0.32 16 2 C -0.12 -0.65 5.25 -26.74 -0.14 -0.79 16 3 C 0.05 0.33 2.04 -67.61 -0.14 0.20 16 4 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 5 C 0.07 0.48 5.98 37.21 0.22 0.70 16 6 O -0.39 -3.50 10.83 -35.23 -0.38 -3.88 16 7 C 0.06 0.47 7.01 37.21 0.26 0.73 16 8 C 0.01 0.05 5.13 -3.71 -0.02 0.03 16 9 N -0.53 -4.03 4.65 -226.33 -1.05 -5.08 16 10 C 0.05 0.34 4.70 -3.82 -0.02 0.32 16 11 C 0.11 0.93 5.63 -4.05 -0.02 0.91 16 12 N -1.12 -10.54 5.89 -10.62 -0.06 -10.60 16 13 S 2.60 35.19 5.46 -107.50 -0.59 34.60 16 14 O -0.96 -15.96 18.08 -57.54 -1.04 -17.00 16 15 O -0.96 -15.90 17.50 -57.54 -1.01 -16.91 16 16 C -0.61 -8.48 6.07 37.16 0.23 -8.25 16 17 C -0.10 -1.87 5.16 -26.73 -0.14 -2.01 16 18 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 19 C -0.53 -14.92 9.66 -34.44 -0.33 -15.25 16 20 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 21 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 22 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 23 Si 0.88 21.29 27.47 -169.99 -4.67 16.62 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.22 6.95 -51.93 -0.36 -0.14 16 30 H 0.07 0.37 6.18 -51.93 -0.32 0.05 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.54 6.88 -51.93 -0.36 0.18 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.70 6.06 -51.93 -0.31 0.39 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.55 6.40 -51.93 -0.33 0.21 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.74 5.82 -51.93 -0.30 0.44 16 42 H 0.41 3.08 8.62 -34.47 -0.30 2.79 16 43 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.13 1.54 8.14 -51.92 -0.42 1.12 16 45 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 46 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 47 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 48 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 49 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -35.99 392.20 -10.63 -46.61 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.56 Total: -1.35 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 0.04 Total: -22.09 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: -0.34 Total: -42.51 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -2.43 Total: -37.80 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 35.19 SS G_CDS: -0.59 Total: 34.60 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.99 -10.63 -46.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872643212.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.420 kcal (2) G-P(sol) polarization free energy of solvation -35.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds