Wall clock time and date at job start Tue Mar 31 2020 17:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47288 * 2 1 4 4 H 1.09004 * 109.54476 * 305.42454 * 3 2 1 5 5 C 1.53098 * 109.51086 * 65.53621 * 3 2 1 6 6 O 1.43014 * 109.25869 * 176.78249 * 5 3 2 7 7 C 1.43014 * 113.74146 * 301.32926 * 6 5 3 8 8 C 1.53101 * 109.25705 * 58.67049 * 7 6 5 9 9 N 1.47012 * 109.25776 * 303.15491 * 8 7 6 10 10 C 1.46907 * 110.99817 * 182.39170 * 9 8 7 11 11 C 1.52999 * 109.47289 * 52.06712 * 10 9 8 12 12 N 1.46490 * 109.47041 * 180.02562 * 11 10 9 13 13 S 1.65605 * 120.00046 * 164.99985 * 12 11 10 14 14 O 1.42095 * 104.27858 * 181.06644 * 13 12 11 15 15 O 1.42096 * 104.27764 * 308.92462 * 13 12 11 16 16 C 1.81402 * 104.44946 * 64.99706 * 13 12 11 17 17 C 1.52998 * 109.47090 * 180.02562 * 16 13 12 18 18 C 1.53001 * 109.47075 * 179.97438 * 17 16 13 19 19 C 1.50702 * 109.47192 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99810 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00145 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00032 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99794 * 0.02562 * 21 19 18 24 24 H 1.48508 * 109.46999 * 89.99897 * 23 21 19 25 25 H 1.48502 * 109.46836 * 209.99233 * 23 21 19 26 26 H 1.48496 * 109.47262 * 329.99613 * 23 21 19 27 27 H 1.09004 * 109.47172 * 54.25395 * 1 2 3 28 28 H 1.08996 * 109.47392 * 174.25601 * 1 2 3 29 29 H 1.09006 * 109.47287 * 294.25504 * 1 2 3 30 30 H 1.09002 * 109.46944 * 239.99232 * 2 1 3 31 31 H 1.08998 * 109.46708 * 119.99731 * 2 1 3 32 32 H 1.08997 * 109.50492 * 296.71748 * 5 3 2 33 33 H 1.08996 * 109.50422 * 56.85228 * 5 3 2 34 34 H 1.09003 * 109.51019 * 178.60547 * 7 6 5 35 35 H 1.08998 * 109.50684 * 298.69293 * 7 6 5 36 36 H 1.09002 * 109.50950 * 183.21706 * 8 7 6 37 37 H 1.09001 * 109.50618 * 63.08835 * 8 7 6 38 38 H 1.09002 * 109.46685 * 292.06520 * 10 9 8 39 39 H 1.09004 * 109.46832 * 172.06369 * 10 9 8 40 40 H 1.09004 * 109.47124 * 59.99543 * 11 10 9 41 41 H 1.09001 * 109.46510 * 299.99961 * 11 10 9 42 42 H 0.97001 * 120.00254 * 344.99517 * 12 11 10 43 43 H 1.08996 * 109.47207 * 300.00055 * 16 13 12 44 44 H 1.08999 * 109.47088 * 60.00153 * 16 13 12 45 45 H 1.08996 * 109.46926 * 299.99965 * 17 16 13 46 46 H 1.08999 * 109.47244 * 59.99986 * 17 16 13 47 47 H 1.08996 * 109.47269 * 299.99821 * 18 17 16 48 48 H 1.08999 * 109.47042 * 59.99929 * 18 17 16 49 49 H 0.97001 * 119.99867 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6002 1.9847 -0.8371 5 6 1.6471 2.1237 1.3135 6 8 2.1903 3.4463 1.3398 7 6 3.6147 3.4863 1.2176 8 6 4.0276 2.8188 -0.0969 9 7 3.5045 1.4453 -0.1285 10 6 3.9271 0.7490 -1.3511 11 6 5.4449 0.8650 -1.5054 12 7 5.8661 0.1712 -2.7249 13 16 7.3773 0.4361 -3.3483 14 8 7.4197 -0.3686 -4.5186 15 8 7.4804 1.8511 -3.4280 16 6 8.5075 -0.2144 -2.0873 17 6 9.9530 -0.0252 -2.5515 18 6 10.9063 -0.5733 -1.4877 19 6 12.3301 -0.3874 -1.9452 20 1 12.5346 0.0757 -2.8993 21 6 13.3717 -0.8077 -1.1455 22 7 14.6141 -0.6460 -1.5451 23 14 13.0179 -1.6081 0.5049 24 1 12.8905 -3.0768 0.3255 25 1 14.1312 -1.3189 1.4440 26 1 11.7508 -1.0651 1.0569 27 1 -0.3634 0.6004 -0.8341 28 1 -0.3634 -1.0224 -0.1028 29 1 -0.3634 0.4222 0.9370 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5607 2.1749 1.3861 33 1 2.0421 1.5513 2.1528 34 1 3.9514 4.5230 1.2209 35 1 4.0669 2.9541 2.0545 36 1 5.1151 2.7959 -0.1677 37 1 3.6195 3.3831 -0.9355 38 1 3.4385 1.2014 -2.2141 39 1 3.6479 -0.3026 -1.2853 40 1 5.9335 0.4127 -0.6424 41 1 5.7240 1.9166 -1.5712 42 1 5.2599 -0.4434 -3.1673 43 1 8.3541 0.3214 -1.1506 44 1 8.3103 -1.2756 -1.9353 45 1 10.1068 -0.5607 -3.4883 46 1 10.1500 1.0361 -2.7032 47 1 10.7524 -0.0373 -0.5511 48 1 10.7095 -1.6345 -1.3356 49 1 15.3469 -0.9413 -0.9822 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872643212.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:26 Heat of formation + Delta-G solvation = -155.372454 kcal Electronic energy + Delta-G solvation = -27310.775579 eV Core-core repulsion = 23398.454253 eV Total energy + Delta-G solvation = -3912.321327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.94120 -38.26171 -37.76907 -37.07241 -36.50026 -36.13605 -34.60975 -34.24515 -30.77972 -30.15403 -29.87266 -26.93960 -25.70175 -25.38810 -23.27035 -22.50366 -22.24830 -21.00632 -20.38729 -18.98481 -18.66629 -17.84855 -17.38426 -17.25340 -17.13954 -16.51137 -16.43707 -16.20646 -15.88338 -15.64733 -15.48258 -15.28593 -14.87650 -14.69580 -14.46175 -14.06095 -13.90598 -13.67392 -13.54020 -13.28672 -13.22173 -13.16587 -13.14762 -12.77515 -12.69065 -12.64419 -12.56969 -12.54363 -12.19058 -11.84052 -11.72838 -11.69524 -11.63700 -11.40572 -11.33440 -11.26922 -10.77181 -10.56547 -10.39934 -9.45085 -8.29515 -6.35518 -0.76119 1.37530 1.40092 1.51728 1.72291 2.36854 2.68213 2.77250 2.93101 3.05706 3.23084 3.65418 3.70805 3.77133 3.86329 3.93457 4.04820 4.11422 4.14565 4.25532 4.33940 4.38646 4.40552 4.46900 4.52229 4.55677 4.63130 4.71100 4.79008 4.82027 4.85475 4.87516 4.89402 4.96532 5.00635 5.06393 5.19588 5.27425 5.34992 5.40112 5.46792 5.63086 5.87378 5.91796 6.09062 6.18282 6.25555 6.72906 7.29153 8.87445 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002428 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.882658 B =11528.908280 C =12381.607461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C 0.051 3.949 4 H 0.041 0.959 5 C 0.066 3.934 6 O -0.407 6.407 7 C 0.061 3.939 8 C 0.005 3.995 9 N -0.532 5.532 10 C 0.050 3.950 11 C 0.104 3.896 12 N -1.108 6.108 13 S 2.627 3.373 14 O -0.994 6.994 15 O -0.994 6.994 16 C -0.608 4.608 17 C -0.105 4.105 18 C -0.005 4.005 19 C -0.544 4.544 20 H 0.029 0.971 21 C -0.001 4.001 22 N -0.953 5.953 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.286 1.286 26 H -0.237 1.237 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.036 0.964 38 H 0.040 0.960 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.426 0.574 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.011 1.552 8.027 34.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.058 4.058 4 H 0.059 0.941 5 C -0.011 4.011 6 O -0.326 6.326 7 C -0.016 4.016 8 C -0.123 4.123 9 N -0.258 5.258 10 C -0.079 4.079 11 C -0.023 4.023 12 N -0.870 5.870 13 S 2.723 3.277 14 O -0.984 6.984 15 O -0.983 6.983 16 C -0.740 4.740 17 C -0.144 4.144 18 C -0.044 4.044 19 C -0.582 4.582 20 H 0.047 0.953 21 C -0.197 4.197 22 N -0.593 5.593 23 Si 0.778 3.222 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.160 1.160 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.263 0.737 43 H 0.173 0.827 44 H 0.176 0.824 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.049 0.951 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -32.487 2.000 7.728 33.453 hybrid contribution 0.442 -0.436 -0.212 0.656 sum -32.045 1.564 7.515 32.951 Atomic orbital electron populations 1.21803 0.94515 1.02510 1.02207 1.21564 0.96439 0.93840 1.03396 1.22414 0.86985 0.98144 0.98259 0.94119 1.22883 0.99677 0.82660 0.95859 1.87968 1.21841 1.28517 1.94244 1.22790 0.80631 1.02102 0.96062 1.23005 1.02119 0.88854 0.98365 1.62274 1.10603 1.15731 1.37224 1.22316 0.93600 1.01261 0.90695 1.21579 0.96692 0.97560 0.86433 1.55205 1.32305 1.59742 1.39726 1.04251 0.74551 0.73723 0.75208 1.93544 1.86411 1.71603 1.46854 1.93534 1.86337 1.31693 1.86772 1.30490 1.09333 1.15446 1.18689 1.21184 0.91217 1.01770 1.00237 1.19509 0.92322 0.97082 0.95473 1.21568 0.91952 1.39832 1.04848 0.95272 1.26135 0.94469 0.96115 1.03012 1.70087 0.99946 1.49241 1.40047 0.85580 0.79167 0.79247 0.78176 1.19012 1.21233 1.15962 0.92904 0.91648 0.91890 0.91033 0.90662 0.87216 0.91879 0.87304 0.91634 0.88048 0.94538 0.94220 0.87688 0.88724 0.90753 0.73727 0.82676 0.82440 0.91945 0.91863 0.94825 0.95066 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.54 71.98 0.69 -0.35 16 2 C -0.11 -0.99 5.25 30.59 0.16 -0.82 16 3 C 0.05 0.61 2.04 44.92 0.09 0.70 16 4 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 5 C 0.07 0.82 5.98 72.02 0.43 1.25 16 6 O -0.41 -6.95 10.83 -148.98 -1.61 -8.57 16 7 C 0.06 0.84 7.01 72.02 0.50 1.35 16 8 C 0.00 0.07 5.13 86.32 0.44 0.51 16 9 N -0.53 -7.02 4.65 -869.99 -4.04 -11.06 16 10 C 0.05 0.60 4.70 86.30 0.41 1.01 16 11 C 0.10 1.45 5.63 86.38 0.49 1.93 16 12 N -1.11 -17.85 5.89 -187.50 -1.10 -18.95 16 13 S 2.63 66.78 5.46 -56.49 -0.31 66.47 16 14 O -0.99 -32.14 18.08 -127.65 -2.31 -34.45 16 15 O -0.99 -32.18 17.50 -127.65 -2.23 -34.41 16 16 C -0.61 -14.94 6.07 71.98 0.44 -14.50 16 17 C -0.10 -3.90 5.16 30.59 0.16 -3.74 16 18 C -0.01 -0.24 4.04 29.85 0.12 -0.11 16 19 C -0.54 -31.33 9.66 25.60 0.25 -31.09 16 20 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 21 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 22 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 23 Si 0.96 42.83 27.47 68.60 1.88 44.71 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.24 -9.43 6.54 99.48 0.65 -8.77 16 27 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.36 6.95 -2.38 -0.02 0.35 16 30 H 0.07 0.59 6.18 -2.39 -0.01 0.57 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 1.04 6.88 -2.39 -0.02 1.02 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 1.31 6.06 -2.39 -0.01 1.30 16 37 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.11 0.94 6.40 -2.39 -0.02 0.93 16 40 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 1.19 5.82 -2.39 -0.01 1.18 16 42 H 0.43 5.16 8.62 -96.74 -0.83 4.32 16 43 H 0.16 2.97 8.14 -2.39 -0.02 2.95 16 44 H 0.16 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 48 H 0.03 1.29 7.57 -2.39 -0.02 1.27 16 49 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -79.58 392.20 -4.75 -84.33 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.04 Total: 15.11 kcal Atomic # 6 Polarization: -48.09 SS G_CDS: 4.63 Total: -43.46 kcal Atomic # 7 Polarization: -84.90 SS G_CDS: -4.85 Total: -89.74 kcal Atomic # 8 Polarization: -71.27 SS G_CDS: -6.15 Total: -77.42 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.88 Total: 44.71 kcal Atomic # 16 Polarization: 66.78 SS G_CDS: -0.31 Total: 66.47 kcal Total: -79.58 -4.75 -84.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872643212.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.045 kcal (2) G-P(sol) polarization free energy of solvation -79.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds