Wall clock time and date at job start Tue Mar 31 2020 17:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47584 * 2 1 4 4 C 1.53004 * 109.47168 * 240.00171 * 2 1 3 5 5 O 1.45201 * 109.47100 * 120.00002 * 2 1 3 6 6 C 1.34634 * 116.99790 * 59.99644 * 5 2 1 7 7 O 1.21508 * 120.00179 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00216 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00319 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.46883 * 180.02562 * 9 8 6 11 11 C 1.38352 * 119.95376 * 90.00144 * 10 9 8 12 12 C 1.38228 * 120.33749 * 180.02562 * 11 10 9 13 13 C 1.38663 * 120.06393 * 0.29369 * 12 11 10 14 14 C 1.39443 * 119.52891 * 359.30776 * 13 12 11 15 15 C 1.38163 * 119.95420 * 269.97714 * 10 9 8 16 16 N 1.39818 * 119.78937 * 180.56788 * 14 13 12 17 17 C 1.36819 * 121.11930 * 166.33693 * 16 14 13 18 18 H 1.07990 * 120.00296 * 335.19094 * 17 16 14 19 19 C 1.38774 * 119.99402 * 155.18604 * 17 16 14 20 20 N 1.31610 * 120.00066 * 345.33298 * 19 17 16 21 21 Si 1.86800 * 119.99739 * 165.32677 * 19 17 16 22 22 H 1.48499 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46571 * 120.00240 * 21 19 17 24 24 H 1.48490 * 109.47430 * 240.00151 * 21 19 17 25 25 C 1.47279 * 117.75431 * 346.36440 * 16 14 13 26 26 C 1.53536 * 107.61431 * 42.06276 * 25 16 14 27 27 O 1.35876 * 119.68586 * 179.97438 * 13 12 11 28 28 H 1.09002 * 109.47093 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.46821 * 59.99919 * 1 2 3 30 30 H 1.08994 * 109.47564 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47589 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47248 * 300.00416 * 3 2 1 33 33 H 1.09000 * 109.46599 * 59.99671 * 3 2 1 34 34 H 1.09005 * 109.46523 * 299.99842 * 4 2 1 35 35 H 1.08995 * 109.46996 * 59.99580 * 4 2 1 36 36 H 1.09001 * 109.46915 * 180.02562 * 4 2 1 37 37 H 0.97005 * 120.00058 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.46814 * 60.00609 * 9 8 6 39 39 H 1.08994 * 109.46901 * 299.99854 * 9 8 6 40 40 H 1.07993 * 119.82805 * 0.08606 * 11 10 9 41 41 H 1.07997 * 119.96948 * 180.02562 * 12 11 10 42 42 H 1.08001 * 120.07510 * 359.97438 * 15 10 9 43 43 H 0.97000 * 119.99998 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.82944 * 161.58764 * 25 16 14 45 45 H 1.09004 * 109.83090 * 282.53420 * 25 16 14 46 46 H 1.08999 * 109.58415 * 61.65612 * 26 25 16 47 47 H 1.08996 * 109.58630 * 182.08311 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9515 -2.5096 0.5036 8 7 2.0679 -2.6657 2.4166 9 6 1.6746 -4.0672 2.5826 10 6 2.2656 -4.6069 3.8595 11 6 1.5575 -4.5086 5.0441 12 6 2.0923 -5.0005 6.2200 13 6 3.3470 -5.5909 6.2190 14 6 4.0558 -5.6967 5.0229 15 6 3.5136 -5.1996 3.8456 16 7 5.3163 -6.3017 5.0136 17 6 5.9149 -6.6708 3.8400 18 1 5.3121 -6.8787 2.9684 19 6 7.2967 -6.7777 3.7696 20 7 8.0462 -6.2569 4.7178 21 14 8.0929 -7.6612 2.3291 22 1 7.0387 -8.1524 1.4058 23 1 8.9861 -6.7216 1.6049 24 1 8.8868 -8.8112 2.8313 25 6 5.9776 -6.5289 6.3099 26 6 4.9131 -7.0398 7.2913 27 8 3.8654 -6.0713 7.3795 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6275 -2.2369 3.0829 38 1 2.0411 -4.6499 1.7375 39 1 0.5878 -4.1366 2.6279 40 1 0.5817 -4.0462 5.0497 41 1 1.5342 -4.9210 7.1412 42 1 4.0658 -5.2769 2.9206 43 1 9.0120 -6.3320 4.6689 44 1 6.7651 -7.2741 6.1976 45 1 6.4014 -5.5943 6.6776 46 1 4.5070 -7.9848 6.9305 47 1 5.3615 -7.1839 8.2742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879076716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:07 Heat of formation + Delta-G solvation = -82.959075 kcal Electronic energy + Delta-G solvation = -29019.404283 eV Core-core repulsion = 24974.779084 eV Total energy + Delta-G solvation = -4044.625199 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62904 -39.83351 -37.71523 -36.64980 -35.69186 -34.49754 -33.80061 -32.05122 -30.43193 -29.63966 -27.70761 -27.51014 -27.44778 -25.89348 -24.13562 -22.99975 -21.97783 -21.39845 -20.03619 -19.20246 -18.08541 -17.53325 -17.16112 -16.55168 -16.12071 -15.71604 -15.64577 -15.05240 -14.79467 -14.54913 -14.43788 -13.95642 -13.62864 -13.48097 -13.34153 -13.24099 -13.15863 -12.75101 -12.60416 -12.46969 -12.08623 -12.05717 -11.97134 -11.93899 -11.58926 -11.42962 -11.33837 -11.25796 -10.95551 -10.80996 -10.62676 -10.42838 -10.35671 -10.21678 -9.91491 -9.69003 -9.47950 -8.93251 -8.69243 -7.63571 -6.70602 -6.48634 -3.87815 1.91282 2.35927 2.60324 3.01805 3.06733 3.12444 3.16360 3.90138 4.10211 4.32216 4.61123 4.63895 4.67822 4.70025 4.82222 4.94658 5.25141 5.34806 5.43045 5.51214 5.55472 5.57629 5.61227 5.67402 5.73664 5.77511 5.81799 5.87319 5.88664 5.94688 6.11009 6.20387 6.23435 6.25310 6.47413 6.49528 6.56965 6.67035 6.89330 6.92791 7.01271 7.21584 7.26943 7.39790 7.57851 7.67757 7.80445 8.24986 8.48985 8.56224 9.10632 9.47751 10.51182 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.003144 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.030849 B = 8902.643086 C =10617.265899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.648 3.352 7 O -0.576 6.576 8 N -0.700 5.700 9 C 0.189 3.811 10 C -0.095 4.095 11 C -0.180 4.180 12 C -0.102 4.102 13 C 0.022 3.978 14 C 0.149 3.851 15 C -0.160 4.160 16 N -0.453 5.453 17 C -0.298 4.298 18 H 0.095 0.905 19 C 0.027 3.973 20 N -0.875 5.875 21 Si 0.925 3.075 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.279 1.279 25 C 0.111 3.889 26 C 0.037 3.963 27 O -0.325 6.325 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.409 0.591 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.270 0.730 44 H 0.101 0.899 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 8.236 -3.819 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.401 3.599 7 O -0.466 6.466 8 N -0.358 5.358 9 C 0.068 3.932 10 C -0.097 4.097 11 C -0.202 4.202 12 C -0.121 4.121 13 C -0.027 4.027 14 C 0.035 3.965 15 C -0.185 4.185 16 N -0.143 5.143 17 C -0.426 4.426 18 H 0.113 0.887 19 C -0.178 4.178 20 N -0.511 5.511 21 Si 0.751 3.249 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.013 4.013 26 C -0.039 4.039 27 O -0.240 6.240 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.244 0.756 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.915 7.930 -4.075 12.608 hybrid contribution 1.063 -0.335 -0.519 1.230 sum -7.852 7.595 -4.594 11.851 Atomic orbital electron populations 1.22510 0.94167 1.05101 1.02200 1.22006 0.94239 0.91467 0.82393 1.21854 1.02333 0.92711 1.02891 1.22520 1.01664 1.03602 0.96324 1.86316 1.71656 1.24000 1.46148 1.18140 0.79021 0.80333 0.82445 1.90866 1.41780 1.70482 1.43502 1.45021 1.54908 1.12662 1.23219 1.20103 0.99000 0.78222 0.95862 1.19204 0.95229 1.01852 0.93404 1.20086 1.00443 1.08236 0.91473 1.20005 0.92205 1.01936 0.97979 1.18358 0.94279 1.05370 0.84711 1.18102 0.89078 0.96087 0.93248 1.20215 0.96048 1.04666 0.97564 1.42645 1.13130 1.53255 1.05253 1.19543 0.90006 1.42814 0.90215 0.88744 1.25357 0.96359 0.97277 0.98761 1.70040 1.05775 1.41257 1.34045 0.85874 0.79301 0.79047 0.80664 1.19150 1.20575 1.20491 1.22115 0.94137 1.02201 0.82830 1.23367 0.88879 0.90564 1.01134 1.85867 1.52423 1.56994 1.28692 0.92272 0.91400 0.89276 0.91449 0.90347 0.91535 0.89251 0.91398 0.92141 0.75634 0.90930 0.91002 0.87347 0.86851 0.86098 0.91983 0.88046 0.91812 0.92795 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 2 C 0.14 1.56 1.13 -90.62 -0.10 1.46 16 3 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 4 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 5 O -0.37 -5.18 9.94 -40.31 -0.40 -5.58 16 6 C 0.65 10.08 8.06 54.06 0.44 10.52 16 7 O -0.58 -9.83 11.88 -19.28 -0.23 -10.06 16 8 N -0.70 -10.47 5.55 -66.47 -0.37 -10.84 16 9 C 0.19 2.92 5.80 -5.19 -0.03 2.89 16 10 C -0.10 -1.66 5.25 -104.61 -0.55 -2.21 16 11 C -0.18 -3.03 9.69 -39.54 -0.38 -3.41 16 12 C -0.10 -1.86 9.97 -39.43 -0.39 -2.25 16 13 C 0.02 0.47 6.52 -38.98 -0.25 0.22 16 14 C 0.15 3.36 6.34 -83.55 -0.53 2.83 16 15 C -0.16 -3.30 8.90 -39.39 -0.35 -3.65 16 16 N -0.45 -10.93 3.03 -112.07 -0.34 -11.27 16 17 C -0.30 -7.46 8.82 -15.13 -0.13 -7.60 16 18 H 0.09 2.33 6.92 -52.49 -0.36 1.97 16 19 C 0.03 0.66 5.02 -17.45 -0.09 0.57 16 20 N -0.87 -22.30 11.09 55.49 0.62 -21.69 16 21 Si 0.92 19.33 29.58 -169.99 -5.03 14.31 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 C 0.11 2.47 5.16 -3.34 -0.02 2.45 16 26 C 0.04 0.70 7.19 37.44 0.27 0.97 16 27 O -0.33 -6.67 10.32 -19.35 -0.20 -6.87 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.41 5.85 8.57 -40.82 -0.35 5.50 16 38 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 39 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.12 2.59 6.72 -52.49 -0.35 2.23 16 43 H 0.27 6.52 8.31 -40.82 -0.34 6.19 16 44 H 0.10 2.33 6.53 -51.93 -0.34 1.99 16 45 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -27.84 378.67 -8.48 -36.32 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -7.06 Total: 11.54 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.17 Total: -1.56 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -0.09 Total: -43.80 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.83 Total: -22.52 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.84 -8.48 -36.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879076716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.639 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds