Wall clock time and date at job start Tue Mar 31 2020 17:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47584 * 2 1 4 4 C 1.53004 * 109.47168 * 240.00171 * 2 1 3 5 5 O 1.45201 * 109.47100 * 120.00002 * 2 1 3 6 6 C 1.34634 * 116.99790 * 59.99644 * 5 2 1 7 7 O 1.21508 * 120.00179 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00216 * 179.97438 * 6 5 2 9 9 C 1.46502 * 120.00319 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.46883 * 180.02562 * 9 8 6 11 11 C 1.38352 * 119.95376 * 90.00144 * 10 9 8 12 12 C 1.38228 * 120.33749 * 180.02562 * 11 10 9 13 13 C 1.38663 * 120.06393 * 0.29369 * 12 11 10 14 14 C 1.39443 * 119.52891 * 359.30776 * 13 12 11 15 15 C 1.38163 * 119.95420 * 269.97714 * 10 9 8 16 16 N 1.39818 * 119.78937 * 180.56788 * 14 13 12 17 17 C 1.36819 * 121.11930 * 166.33693 * 16 14 13 18 18 H 1.07990 * 120.00296 * 335.19094 * 17 16 14 19 19 C 1.38774 * 119.99402 * 155.18604 * 17 16 14 20 20 N 1.31610 * 120.00066 * 345.33298 * 19 17 16 21 21 Si 1.86800 * 119.99739 * 165.32677 * 19 17 16 22 22 H 1.48499 * 109.47127 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46571 * 120.00240 * 21 19 17 24 24 H 1.48490 * 109.47430 * 240.00151 * 21 19 17 25 25 C 1.47279 * 117.75431 * 346.36440 * 16 14 13 26 26 C 1.53536 * 107.61431 * 42.06276 * 25 16 14 27 27 O 1.35876 * 119.68586 * 179.97438 * 13 12 11 28 28 H 1.09002 * 109.47093 * 300.00247 * 1 2 3 29 29 H 1.09001 * 109.46821 * 59.99919 * 1 2 3 30 30 H 1.08994 * 109.47564 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47589 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47248 * 300.00416 * 3 2 1 33 33 H 1.09000 * 109.46599 * 59.99671 * 3 2 1 34 34 H 1.09005 * 109.46523 * 299.99842 * 4 2 1 35 35 H 1.08995 * 109.46996 * 59.99580 * 4 2 1 36 36 H 1.09001 * 109.46915 * 180.02562 * 4 2 1 37 37 H 0.97005 * 120.00058 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.46814 * 60.00609 * 9 8 6 39 39 H 1.08994 * 109.46901 * 299.99854 * 9 8 6 40 40 H 1.07993 * 119.82805 * 0.08606 * 11 10 9 41 41 H 1.07997 * 119.96948 * 180.02562 * 12 11 10 42 42 H 1.08001 * 120.07510 * 359.97438 * 15 10 9 43 43 H 0.97000 * 119.99998 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.82944 * 161.58764 * 25 16 14 45 45 H 1.09004 * 109.83090 * 282.53420 * 25 16 14 46 46 H 1.08999 * 109.58415 * 61.65612 * 26 25 16 47 47 H 1.08996 * 109.58630 * 182.08311 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9515 -2.5096 0.5036 8 7 2.0679 -2.6657 2.4166 9 6 1.6746 -4.0672 2.5826 10 6 2.2656 -4.6069 3.8595 11 6 1.5575 -4.5086 5.0441 12 6 2.0923 -5.0005 6.2200 13 6 3.3470 -5.5909 6.2190 14 6 4.0558 -5.6967 5.0229 15 6 3.5136 -5.1996 3.8456 16 7 5.3163 -6.3017 5.0136 17 6 5.9149 -6.6708 3.8400 18 1 5.3121 -6.8787 2.9684 19 6 7.2967 -6.7777 3.7696 20 7 8.0462 -6.2569 4.7178 21 14 8.0929 -7.6612 2.3291 22 1 7.0387 -8.1524 1.4058 23 1 8.9861 -6.7216 1.6049 24 1 8.8868 -8.8112 2.8313 25 6 5.9776 -6.5289 6.3099 26 6 4.9131 -7.0398 7.2913 27 8 3.8654 -6.0713 7.3795 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 2.6275 -2.2369 3.0829 38 1 2.0411 -4.6499 1.7375 39 1 0.5878 -4.1366 2.6279 40 1 0.5817 -4.0462 5.0497 41 1 1.5342 -4.9210 7.1412 42 1 4.0658 -5.2769 2.9206 43 1 9.0120 -6.3320 4.6689 44 1 6.7651 -7.2741 6.1976 45 1 6.4014 -5.5943 6.6776 46 1 4.5070 -7.9848 6.9305 47 1 5.3615 -7.1839 8.2742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879076716.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:06 Heat of formation + Delta-G solvation = -99.207494 kcal Electronic energy + Delta-G solvation = -29020.108867 eV Core-core repulsion = 24974.779084 eV Total energy + Delta-G solvation = -4045.329783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78307 -41.40958 -39.01358 -37.97427 -37.37448 -35.76985 -34.82895 -33.83140 -31.90829 -31.20871 -29.38384 -28.32296 -28.26149 -27.37860 -25.80249 -24.51870 -23.28145 -22.86335 -21.20244 -20.67836 -19.37448 -19.15063 -18.75494 -17.64465 -17.45348 -17.29475 -17.11615 -16.47480 -16.20607 -15.75577 -15.47758 -15.44403 -15.08924 -15.01122 -14.74600 -14.67323 -14.46744 -14.30266 -13.73325 -13.63552 -13.33387 -13.25761 -13.03000 -12.93765 -12.86767 -12.82589 -12.60607 -12.44673 -12.37399 -12.28802 -12.20930 -12.08944 -11.70339 -11.34942 -11.32968 -11.23695 -11.07466 -10.43387 -10.17149 -9.19426 -8.46252 -8.25502 -5.75765 0.45856 0.81108 1.35416 1.39374 1.43808 1.51259 1.80537 2.20513 2.53841 2.84498 3.05672 3.14864 3.39504 3.79502 3.84062 3.86694 3.93663 3.98876 4.13243 4.22934 4.31977 4.45178 4.52466 4.62211 4.65412 4.69147 4.73015 4.79968 4.83293 4.87277 4.89194 4.91201 4.94086 5.10231 5.17764 5.25962 5.31373 5.32473 5.34026 5.40645 5.46308 5.60874 5.66027 5.84752 5.97763 6.15732 6.45143 6.58294 6.73922 7.34460 7.36999 7.70150 8.69844 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.003144 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.030849 B = 8902.643086 C =10617.265899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.122 3.878 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.372 6.372 6 C 0.647 3.353 7 O -0.593 6.593 8 N -0.698 5.698 9 C 0.197 3.803 10 C -0.085 4.085 11 C -0.154 4.154 12 C -0.099 4.099 13 C 0.005 3.995 14 C 0.122 3.878 15 C -0.171 4.171 16 N -0.484 5.484 17 C -0.313 4.313 18 H 0.086 0.914 19 C -0.016 4.016 20 N -0.907 5.907 21 Si 0.986 3.014 22 H -0.265 1.265 23 H -0.282 1.282 24 H -0.274 1.274 25 C 0.121 3.879 26 C 0.046 3.954 27 O -0.329 6.329 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.412 0.588 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.103 0.897 43 H 0.269 0.731 44 H 0.085 0.915 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.343 9.611 -3.993 15.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.086 3.914 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.287 6.287 6 C 0.400 3.600 7 O -0.484 6.484 8 N -0.357 5.357 9 C 0.076 3.924 10 C -0.086 4.086 11 C -0.176 4.176 12 C -0.119 4.119 13 C -0.044 4.044 14 C 0.012 3.988 15 C -0.196 4.196 16 N -0.179 5.179 17 C -0.441 4.441 18 H 0.103 0.897 19 C -0.216 4.216 20 N -0.546 5.546 21 Si 0.810 3.190 22 H -0.189 1.189 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.004 4.004 26 C -0.030 4.030 27 O -0.244 6.244 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.247 0.753 38 H 0.081 0.919 39 H 0.108 0.892 40 H 0.165 0.835 41 H 0.160 0.840 42 H 0.121 0.879 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.253 9.332 -4.244 15.223 hybrid contribution 1.520 -0.604 -0.485 1.706 sum -9.733 8.728 -4.729 13.902 Atomic orbital electron populations 1.22456 0.93528 1.03788 1.03687 1.22446 0.94958 0.92646 0.81384 1.21887 1.02208 0.90744 1.04440 1.22489 1.01365 1.02336 0.97648 1.86330 1.71713 1.23146 1.47511 1.18202 0.78789 0.80819 0.82158 1.90868 1.42537 1.71007 1.44011 1.44919 1.54976 1.12414 1.23379 1.19992 0.99707 0.78376 0.94367 1.19343 0.93904 1.00601 0.94795 1.20558 1.01264 1.05499 0.90298 1.20432 0.91228 1.00487 0.99706 1.18761 0.95284 1.06012 0.84380 1.18529 0.88832 0.96867 0.94592 1.20266 0.97357 1.05520 0.96506 1.42723 1.14054 1.55813 1.05263 1.19636 0.90416 1.43349 0.90708 0.89673 1.26061 0.96544 0.97983 1.01030 1.70144 1.05728 1.42996 1.35704 0.84959 0.78195 0.77912 0.77914 1.18909 1.20799 1.19922 1.21897 0.94796 1.00425 0.83246 1.23453 0.87546 0.89944 1.02092 1.85846 1.52638 1.57434 1.28484 0.91795 0.88918 0.91874 0.91698 0.87692 0.91079 0.92000 0.88772 0.92552 0.75264 0.91887 0.89184 0.83511 0.83976 0.87917 0.92123 0.89633 0.94554 0.92569 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 2 C 0.12 2.59 1.13 -10.79 -0.01 2.58 16 3 C -0.14 -2.00 8.85 71.98 0.64 -1.37 16 4 C -0.18 -3.92 8.37 71.98 0.60 -3.32 16 5 O -0.37 -10.13 9.94 -55.43 -0.55 -10.69 16 6 C 0.65 19.60 8.06 129.79 1.05 20.64 16 7 O -0.59 -19.94 11.88 19.81 0.24 -19.70 16 8 N -0.70 -20.09 5.55 -594.61 -3.30 -23.39 16 9 C 0.20 5.79 5.80 85.63 0.50 6.28 16 10 C -0.08 -2.83 5.25 -19.85 -0.10 -2.94 16 11 C -0.15 -4.65 9.69 22.29 0.22 -4.44 16 12 C -0.10 -3.34 9.97 22.37 0.22 -3.11 16 13 C 0.01 0.21 6.52 22.66 0.15 0.36 16 14 C 0.12 5.62 6.34 38.30 0.24 5.86 16 15 C -0.17 -7.17 8.90 22.39 0.20 -6.97 16 16 N -0.48 -24.37 3.03 -508.48 -1.54 -25.91 16 17 C -0.31 -16.45 8.82 84.04 0.74 -15.71 16 18 H 0.09 4.45 6.92 -2.92 -0.02 4.43 16 19 C -0.02 -0.81 5.02 84.85 0.43 -0.38 16 20 N -0.91 -48.40 11.09 21.64 0.24 -48.16 16 21 Si 0.99 41.06 29.58 68.60 2.03 43.09 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 C 0.12 5.57 5.16 86.41 0.45 6.02 16 26 C 0.05 1.71 7.19 72.16 0.52 2.23 16 27 O -0.33 -13.20 10.32 -92.15 -0.95 -14.15 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.60 5.88 -2.39 -0.01 1.58 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.70 5.88 -2.38 -0.01 1.69 16 35 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.41 11.31 8.57 -92.70 -0.79 10.52 16 38 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 39 H 0.09 2.36 8.08 -2.39 -0.02 2.35 16 40 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 41 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.10 4.62 6.72 -2.91 -0.02 4.60 16 43 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 44 H 0.09 4.14 6.53 -2.39 -0.02 4.13 16 45 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 Total: -1.00 -62.90 378.67 2.78 -60.12 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: 0.19 Total: 35.93 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 6.43 Total: 2.86 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -4.60 Total: -97.46 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.27 Total: -44.54 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -62.90 2.78 -60.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879076716.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.088 kcal (2) G-P(sol) polarization free energy of solvation -62.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds