Wall clock time and date at job start Tue Mar 31 2020 18:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50710 * 120.00065 * 2 1 4 4 N 1.46499 * 109.47028 * 124.99931 * 3 2 1 5 5 C 1.46506 * 120.00024 * 263.23424 * 4 3 2 6 6 C 1.50699 * 109.46987 * 269.99976 * 5 4 3 7 7 H 1.07995 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99903 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99888 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00013 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46604 * 89.99998 * 10 8 6 12 12 H 1.48491 * 109.47347 * 209.99922 * 10 8 6 13 13 H 1.48497 * 109.46990 * 330.00421 * 10 8 6 14 14 C 1.34776 * 120.00126 * 83.23261 * 4 3 2 15 15 O 1.21696 * 119.99990 * 183.86365 * 14 4 3 16 16 C 1.46655 * 120.00052 * 3.86693 * 14 4 3 17 17 C 1.36541 * 125.98793 * 173.44276 * 16 14 4 18 18 C 1.40366 * 106.70776 * 180.02562 * 17 16 14 19 19 C 1.35132 * 107.11440 * 359.97438 * 18 17 16 20 20 C 1.50700 * 125.61434 * 180.02562 * 19 18 17 21 21 N 1.46900 * 109.46928 * 90.00580 * 20 19 18 22 22 C 1.47023 * 110.99762 * 293.63021 * 21 20 19 23 23 C 1.53095 * 109.25432 * 177.60726 * 22 21 20 24 24 O 1.43022 * 109.26053 * 56.85454 * 23 22 21 25 25 C 1.43012 * 113.73589 * 301.32425 * 24 23 22 26 26 C 1.47018 * 111.00191 * 170.00122 * 21 20 19 27 27 O 1.33931 * 108.77050 * 0.02562 * 19 18 17 28 28 H 1.08001 * 119.99828 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00000 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00370 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47116 * 5.00270 * 3 2 1 32 32 H 1.08999 * 109.46911 * 244.99992 * 3 2 1 33 33 H 1.09002 * 109.46608 * 30.00278 * 5 4 3 34 34 H 1.08995 * 109.47171 * 149.99694 * 5 4 3 35 35 H 0.97007 * 119.99681 * 179.97438 * 9 8 6 36 36 H 1.07996 * 126.64770 * 0.02562 * 17 16 14 37 37 H 1.08002 * 126.44512 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47013 * 209.99877 * 20 19 18 39 39 H 1.08998 * 109.47527 * 330.00586 * 20 19 18 40 40 H 1.08995 * 109.50623 * 297.54224 * 22 21 20 41 41 H 1.09001 * 109.50564 * 57.67881 * 22 21 20 42 42 H 1.09001 * 109.51327 * 296.91270 * 23 22 21 43 43 H 1.09008 * 109.54151 * 176.80807 * 23 22 21 44 44 H 1.09005 * 109.50696 * 298.73584 * 25 24 23 45 45 H 1.09000 * 109.54412 * 178.62580 * 25 24 23 46 46 H 1.09002 * 109.50181 * 302.32213 * 26 21 20 47 47 H 1.09000 * 109.50916 * 62.45395 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6108 1.9977 2.3790 6 6 3.0298 3.4443 2.3255 7 1 3.5315 3.8291 1.4500 8 6 2.7725 4.2765 3.3943 9 7 3.1386 5.5388 3.3478 10 14 1.9040 3.6110 4.9084 11 1 2.9113 3.0965 5.8706 12 1 1.1196 4.6981 5.5470 13 1 0.9911 2.5093 4.5111 14 6 4.2018 0.7441 1.0247 15 8 4.9465 0.7048 1.9864 16 6 4.6190 0.1518 -0.2505 17 6 5.8536 -0.3588 -0.5322 18 6 5.8085 -0.8151 -1.8588 19 6 4.5638 -0.5666 -2.3227 20 6 4.0616 -0.8917 -3.7059 21 7 3.4846 -2.2426 -3.7123 22 6 4.5202 -3.2590 -3.4755 23 6 3.8681 -4.6433 -3.4308 24 8 3.1567 -4.8693 -4.6508 25 6 2.1399 -3.8983 -4.9126 26 6 2.7745 -2.5063 -4.9723 27 8 3.8501 0.0163 -1.3508 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.5299 1.9369 2.5063 34 1 3.1036 1.5075 3.2186 35 1 2.9573 6.1244 4.0997 36 1 6.7007 -0.4031 0.1362 37 1 6.6163 -1.2784 -2.4058 38 1 3.2982 -0.1692 -3.9944 39 1 4.8899 -0.8471 -4.4130 40 1 5.2524 -3.2274 -4.2824 41 1 5.0157 -3.0592 -2.5254 42 1 3.1751 -4.6924 -2.5909 43 1 4.6383 -5.4056 -3.3121 44 1 1.3966 -3.9256 -4.1157 45 1 1.6600 -4.1207 -5.8657 46 1 1.9957 -1.7571 -5.1148 47 1 3.4788 -2.4627 -5.8031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880087636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:58 Heat of formation + Delta-G solvation = -18.237934 kcal Electronic energy + Delta-G solvation = -29455.395151 eV Core-core repulsion = 25413.576472 eV Total energy + Delta-G solvation = -4041.818679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64787 -39.87265 -38.93610 -36.33051 -35.90693 -33.23137 -33.01365 -32.13500 -31.60857 -31.06947 -28.87398 -27.59508 -25.71814 -24.88469 -24.42922 -22.93788 -21.53304 -20.98379 -20.67057 -20.05367 -19.19589 -17.20571 -17.16766 -16.93055 -16.55812 -16.04823 -15.93422 -15.64670 -15.46964 -15.25551 -14.72823 -14.57991 -14.37177 -14.18914 -13.83641 -13.35040 -13.12670 -13.06760 -12.95873 -12.79243 -12.69365 -12.32603 -12.16918 -11.79276 -11.67749 -11.62657 -11.48108 -11.12567 -10.96351 -10.94884 -10.54744 -10.17941 -10.09663 -9.91185 -9.65859 -9.44846 -9.18180 -8.90541 -8.61231 -8.45114 -7.81987 -6.11155 -4.10893 1.26115 2.34026 2.45221 2.73566 3.28741 3.34747 3.36801 3.40384 3.54722 3.65132 3.85118 4.37845 4.41625 4.49726 4.56814 4.68715 4.76415 4.84146 4.92242 4.97095 5.05919 5.13737 5.16015 5.22185 5.24554 5.28187 5.38451 5.40931 5.46645 5.57361 5.63457 5.77172 5.87180 5.88472 6.05871 6.25039 6.37847 6.46576 6.48688 6.63388 6.75726 6.80073 6.87897 6.89510 7.05115 7.27568 7.56041 8.07528 8.41332 8.72759 8.92184 9.48210 11.01970 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.002895 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.271201 B = 9668.338917 C =10279.547553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.154 4.154 3 C 0.133 3.867 4 N -0.575 5.575 5 C 0.216 3.784 6 C -0.533 4.533 7 H 0.076 0.924 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.875 3.125 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.590 3.410 15 O -0.519 6.519 16 C -0.048 4.048 17 C -0.137 4.137 18 C -0.211 4.211 19 C 0.005 3.995 20 C 0.134 3.866 21 N -0.533 5.533 22 C 0.012 3.988 23 C 0.064 3.936 24 O -0.387 6.387 25 C 0.064 3.936 26 C 0.019 3.981 27 O -0.142 6.142 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.265 0.735 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 -18.421 -18.731 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.173 4.173 3 C 0.010 3.990 4 N -0.304 5.304 5 C 0.096 3.904 6 C -0.571 4.571 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.189 1.189 14 C 0.376 3.624 15 O -0.398 6.398 16 C -0.101 4.101 17 C -0.157 4.157 18 C -0.231 4.231 19 C -0.048 4.048 20 C 0.007 3.993 21 N -0.259 5.259 22 C -0.116 4.116 23 C -0.013 4.013 24 O -0.306 6.306 25 C -0.013 4.013 26 C -0.109 4.109 27 O -0.037 6.037 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.175 0.825 37 H 0.166 0.834 38 H 0.116 0.884 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.746 -18.310 -17.843 25.626 hybrid contribution 0.351 0.139 0.324 0.498 sum -1.395 -18.172 -17.518 25.279 Atomic orbital electron populations 1.23776 0.95736 1.01635 1.01574 1.23354 0.96169 0.98839 0.98911 1.20816 0.92940 0.95529 0.89733 1.47856 1.13776 1.52770 1.16026 1.19774 0.95782 0.93397 0.81419 1.21307 1.39413 0.91983 1.04398 0.90614 1.24834 0.95201 0.94674 0.98113 1.69895 1.46849 1.04814 1.31806 0.86865 0.80309 0.78959 0.83717 1.19789 1.20988 1.18925 1.16651 0.82445 0.78765 0.84506 1.90849 1.52890 1.59613 1.36404 1.22574 0.91772 1.07919 0.87843 1.21851 0.97424 1.00114 0.96337 1.21492 0.97626 1.07926 0.96062 1.22363 0.91068 0.99973 0.91420 1.20461 0.99693 0.90835 0.88353 1.62128 1.27876 1.01509 1.34349 1.22923 0.93569 0.92377 1.02732 1.22673 0.96026 0.95480 0.87120 1.87983 1.50657 1.50588 1.41327 1.22666 0.90153 0.86536 1.01990 1.22810 0.98883 0.99058 0.90138 1.84342 1.39355 1.60712 1.19281 0.88380 0.88794 0.87777 0.88979 0.89361 0.94739 0.94177 0.92478 0.82483 0.83388 0.88430 0.91269 0.93695 0.88790 0.92076 0.88321 0.92032 0.88306 0.89147 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 14.32 29.02 0.42 -2.05 16 2 C -0.15 -2.30 8.95 -36.02 -0.32 -2.62 16 3 C 0.13 2.30 5.45 -5.19 -0.03 2.27 16 4 N -0.58 -12.38 2.46 -177.98 -0.44 -12.82 16 5 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 6 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 7 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 8 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 9 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 10 Si 0.87 21.50 27.47 -169.99 -4.67 16.83 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 14 C 0.59 12.81 7.57 -12.86 -0.10 12.72 16 15 O -0.52 -13.02 16.43 5.19 0.09 -12.93 16 16 C -0.05 -0.84 6.74 -36.80 -0.25 -1.09 16 17 C -0.14 -2.07 10.63 -39.39 -0.42 -2.49 16 18 C -0.21 -2.50 9.31 -39.89 -0.37 -2.87 16 19 C 0.00 0.06 6.23 -35.41 -0.22 -0.17 16 20 C 0.13 1.16 5.49 -4.98 -0.03 1.14 16 21 N -0.53 -4.66 4.72 -235.74 -1.11 -5.77 16 22 C 0.01 0.10 5.39 -3.71 -0.02 0.08 16 23 C 0.06 0.52 7.01 37.21 0.26 0.78 16 24 O -0.39 -3.58 10.83 -35.23 -0.38 -3.96 16 25 C 0.06 0.45 7.01 37.21 0.26 0.71 16 26 C 0.02 0.13 5.64 -3.71 -0.02 0.11 16 27 O -0.14 -2.11 6.44 4.98 0.03 -2.08 16 28 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 29 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.10 1.59 7.83 -52.49 -0.41 1.18 16 31 H 0.09 1.60 7.67 -51.93 -0.40 1.20 16 32 H 0.09 1.45 5.42 -51.93 -0.28 1.17 16 33 H 0.03 0.81 7.13 -51.93 -0.37 0.44 16 34 H 0.04 1.05 6.80 -51.93 -0.35 0.70 16 35 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 37 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 38 H 0.10 0.78 8.04 -51.93 -0.42 0.36 16 39 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.83 6.19 -51.93 -0.32 0.51 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 47 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -34.11 384.95 -8.41 -42.52 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.20 Total: 0.91 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -1.30 Total: -1.74 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.78 Total: -45.34 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.26 Total: -18.97 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.11 -8.41 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880087636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.279 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds