Wall clock time and date at job start Tue Mar 31 2020 18:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50710 * 120.00065 * 2 1 4 4 N 1.46499 * 109.47028 * 124.99931 * 3 2 1 5 5 C 1.46506 * 120.00024 * 263.23424 * 4 3 2 6 6 C 1.50699 * 109.46987 * 269.99976 * 5 4 3 7 7 H 1.07995 * 119.99957 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99903 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99888 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 120.00013 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46604 * 89.99998 * 10 8 6 12 12 H 1.48491 * 109.47347 * 209.99922 * 10 8 6 13 13 H 1.48497 * 109.46990 * 330.00421 * 10 8 6 14 14 C 1.34776 * 120.00126 * 83.23261 * 4 3 2 15 15 O 1.21696 * 119.99990 * 183.86365 * 14 4 3 16 16 C 1.46655 * 120.00052 * 3.86693 * 14 4 3 17 17 C 1.36541 * 125.98793 * 173.44276 * 16 14 4 18 18 C 1.40366 * 106.70776 * 180.02562 * 17 16 14 19 19 C 1.35132 * 107.11440 * 359.97438 * 18 17 16 20 20 C 1.50700 * 125.61434 * 180.02562 * 19 18 17 21 21 N 1.46900 * 109.46928 * 90.00580 * 20 19 18 22 22 C 1.47023 * 110.99762 * 293.63021 * 21 20 19 23 23 C 1.53095 * 109.25432 * 177.60726 * 22 21 20 24 24 O 1.43022 * 109.26053 * 56.85454 * 23 22 21 25 25 C 1.43012 * 113.73589 * 301.32425 * 24 23 22 26 26 C 1.47018 * 111.00191 * 170.00122 * 21 20 19 27 27 O 1.33931 * 108.77050 * 0.02562 * 19 18 17 28 28 H 1.08001 * 119.99828 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.00000 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00370 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47116 * 5.00270 * 3 2 1 32 32 H 1.08999 * 109.46911 * 244.99992 * 3 2 1 33 33 H 1.09002 * 109.46608 * 30.00278 * 5 4 3 34 34 H 1.08995 * 109.47171 * 149.99694 * 5 4 3 35 35 H 0.97007 * 119.99681 * 179.97438 * 9 8 6 36 36 H 1.07996 * 126.64770 * 0.02562 * 17 16 14 37 37 H 1.08002 * 126.44512 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.47013 * 209.99877 * 20 19 18 39 39 H 1.08998 * 109.47527 * 330.00586 * 20 19 18 40 40 H 1.08995 * 109.50623 * 297.54224 * 22 21 20 41 41 H 1.09001 * 109.50564 * 57.67881 * 22 21 20 42 42 H 1.09001 * 109.51327 * 296.91270 * 23 22 21 43 43 H 1.09008 * 109.54151 * 176.80807 * 23 22 21 44 44 H 1.09005 * 109.50696 * 298.73584 * 25 24 23 45 45 H 1.09000 * 109.54412 * 178.62580 * 25 24 23 46 46 H 1.09002 * 109.50181 * 302.32213 * 26 21 20 47 47 H 1.09000 * 109.50916 * 62.45395 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.6108 1.9977 2.3790 6 6 3.0298 3.4443 2.3255 7 1 3.5315 3.8291 1.4500 8 6 2.7725 4.2765 3.3943 9 7 3.1386 5.5388 3.3478 10 14 1.9040 3.6110 4.9084 11 1 2.9113 3.0965 5.8706 12 1 1.1196 4.6981 5.5470 13 1 0.9911 2.5093 4.5111 14 6 4.2018 0.7441 1.0247 15 8 4.9465 0.7048 1.9864 16 6 4.6190 0.1518 -0.2505 17 6 5.8536 -0.3588 -0.5322 18 6 5.8085 -0.8151 -1.8588 19 6 4.5638 -0.5666 -2.3227 20 6 4.0616 -0.8917 -3.7059 21 7 3.4846 -2.2426 -3.7123 22 6 4.5202 -3.2590 -3.4755 23 6 3.8681 -4.6433 -3.4308 24 8 3.1567 -4.8693 -4.6508 25 6 2.1399 -3.8983 -4.9126 26 6 2.7745 -2.5063 -4.9723 27 8 3.8501 0.0163 -1.3508 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1317 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.5299 1.9369 2.5063 34 1 3.1036 1.5075 3.2186 35 1 2.9573 6.1244 4.0997 36 1 6.7007 -0.4031 0.1362 37 1 6.6163 -1.2784 -2.4058 38 1 3.2982 -0.1692 -3.9944 39 1 4.8899 -0.8471 -4.4130 40 1 5.2524 -3.2274 -4.2824 41 1 5.0157 -3.0592 -2.5254 42 1 3.1751 -4.6924 -2.5909 43 1 4.6383 -5.4056 -3.3121 44 1 1.3966 -3.9256 -4.1157 45 1 1.6600 -4.1207 -5.8657 46 1 1.9957 -1.7571 -5.1148 47 1 3.4788 -2.4627 -5.8031 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880087636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:57 Heat of formation + Delta-G solvation = -42.205758 kcal Electronic energy + Delta-G solvation = -29456.434474 eV Core-core repulsion = 25413.576472 eV Total energy + Delta-G solvation = -4042.858002 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.78366 -40.67838 -40.38636 -37.48884 -36.99169 -35.11691 -34.11624 -33.82521 -32.32664 -31.96706 -30.50475 -28.73322 -27.08844 -26.00019 -25.04970 -24.45812 -22.78779 -22.11927 -21.36843 -21.30381 -20.53188 -19.14075 -18.60178 -17.92166 -17.44795 -17.29765 -17.06388 -16.70870 -16.31127 -16.08233 -15.91828 -15.87275 -15.63883 -15.36956 -14.87541 -14.76376 -14.53998 -14.36017 -14.11849 -13.93013 -13.79496 -13.58032 -13.38177 -13.17254 -12.95604 -12.72200 -12.54197 -12.34815 -12.28515 -12.12707 -11.98746 -11.77421 -11.54132 -11.24249 -11.02120 -10.85511 -10.69589 -10.33864 -9.81840 -9.53733 -9.32609 -8.36462 -6.42929 0.01875 1.24413 1.30611 1.33948 1.36508 1.45362 1.57474 2.11497 2.29517 2.37139 2.78140 2.97434 2.99062 3.40897 3.74764 3.91138 3.93900 3.98105 4.02657 4.08170 4.15517 4.22361 4.32209 4.38588 4.39477 4.50043 4.59131 4.64775 4.67618 4.71341 4.75810 4.82376 4.83705 4.89315 4.90636 4.96580 5.02759 5.05395 5.37285 5.38821 5.42068 5.69418 5.79394 5.85478 5.86940 5.96089 6.18722 6.19246 6.45162 6.57977 7.03841 7.22984 8.80356 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019682 B = 0.002895 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.271201 B = 9668.338917 C =10279.547553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.171 4.171 3 C 0.134 3.866 4 N -0.584 5.584 5 C 0.227 3.773 6 C -0.541 4.541 7 H 0.029 0.971 8 C 0.016 3.984 9 N -0.942 5.942 10 Si 0.946 3.054 11 H -0.274 1.274 12 H -0.272 1.272 13 H -0.238 1.238 14 C 0.583 3.417 15 O -0.571 6.571 16 C -0.088 4.088 17 C -0.127 4.127 18 C -0.207 4.207 19 C 0.023 3.977 20 C 0.135 3.865 21 N -0.548 5.548 22 C 0.014 3.986 23 C 0.063 3.937 24 O -0.404 6.404 25 C 0.059 3.941 26 C 0.022 3.978 27 O -0.147 6.147 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.025 0.975 35 H 0.270 0.730 36 H 0.156 0.844 37 H 0.184 0.816 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.055 0.945 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.112 0.888 44 H 0.055 0.945 45 H 0.118 0.882 46 H 0.103 0.897 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 -20.540 -20.557 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.190 4.190 3 C 0.013 3.987 4 N -0.312 5.312 5 C 0.105 3.895 6 C -0.580 4.580 7 H 0.047 0.953 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.768 3.232 11 H -0.199 1.199 12 H -0.197 1.197 13 H -0.161 1.161 14 C 0.372 3.628 15 O -0.454 6.454 16 C -0.141 4.141 17 C -0.148 4.148 18 C -0.226 4.226 19 C -0.030 4.030 20 C 0.008 3.992 21 N -0.274 5.274 22 C -0.114 4.114 23 C -0.014 4.014 24 O -0.323 6.323 25 C -0.017 4.017 26 C -0.105 4.105 27 O -0.042 6.042 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.201 0.799 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.069 0.931 43 H 0.130 0.870 44 H 0.073 0.927 45 H 0.136 0.864 46 H 0.121 0.879 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.176 -20.444 -19.722 28.583 hybrid contribution 0.810 0.773 0.684 1.312 sum -2.366 -19.672 -19.038 27.477 Atomic orbital electron populations 1.24029 0.94924 1.03124 0.98021 1.23061 0.96659 0.97188 1.02101 1.20946 0.92358 0.96941 0.88486 1.47921 1.14810 1.52353 1.16132 1.19434 0.96309 0.90858 0.82874 1.21485 1.39094 0.94313 1.03060 0.95259 1.25813 0.95975 0.94765 1.01721 1.70041 1.48431 1.06444 1.33248 0.85737 0.79413 0.79235 0.78769 1.19934 1.19701 1.16148 1.17148 0.81799 0.78180 0.85655 1.90787 1.54130 1.61830 1.38605 1.21766 0.93037 1.11542 0.87711 1.22112 0.96381 0.98464 0.97843 1.21793 0.98658 1.07638 0.94519 1.23198 0.90926 0.97140 0.91753 1.20651 1.01072 0.91243 0.86265 1.62081 1.28232 1.01380 1.35726 1.22894 0.93623 0.92220 1.02630 1.22726 0.96132 0.96035 0.86517 1.87964 1.51174 1.51499 1.41614 1.22823 0.89697 0.86457 1.02746 1.22845 0.99163 0.99131 0.89399 1.84293 1.39496 1.61302 1.19114 0.87687 0.86352 0.88185 0.89523 0.88852 0.92865 0.95712 0.92076 0.82605 0.79902 0.87422 0.88696 0.92705 0.89569 0.93121 0.86996 0.92714 0.86409 0.87895 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 14.32 67.79 0.97 -2.85 16 2 C -0.17 -4.92 8.95 25.66 0.23 -4.69 16 3 C 0.13 4.69 5.45 85.64 0.47 5.15 16 4 N -0.58 -26.03 2.46 -835.23 -2.05 -28.09 16 5 C 0.23 11.48 4.23 85.63 0.36 11.85 16 6 C -0.54 -32.47 9.94 25.60 0.25 -32.22 16 7 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 8 C 0.02 0.94 5.47 84.65 0.46 1.41 16 9 N -0.94 -59.80 13.96 21.45 0.30 -59.50 16 10 Si 0.95 44.63 27.47 68.60 1.88 46.52 16 11 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 14 C 0.58 26.57 7.57 86.44 0.65 27.22 16 15 O -0.57 -30.36 16.43 -4.34 -0.07 -30.43 16 16 C -0.09 -3.16 6.74 24.07 0.16 -3.00 16 17 C -0.13 -3.83 10.63 22.39 0.24 -3.59 16 18 C -0.21 -4.43 9.31 22.07 0.21 -4.23 16 19 C 0.02 0.50 6.23 24.97 0.16 0.65 16 20 C 0.13 1.89 5.49 85.56 0.47 2.36 16 21 N -0.55 -7.97 4.72 -899.75 -4.24 -12.22 16 22 C 0.01 0.20 5.39 86.31 0.47 0.66 16 23 C 0.06 0.90 7.01 72.01 0.50 1.40 16 24 O -0.40 -6.62 10.83 -148.98 -1.61 -8.23 16 25 C 0.06 0.71 7.01 72.02 0.50 1.21 16 26 C 0.02 0.23 5.64 86.31 0.49 0.72 16 27 O -0.15 -4.28 6.44 -5.11 -0.03 -4.31 16 28 H 0.10 2.34 7.84 -2.91 -0.02 2.31 16 29 H 0.12 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.10 2.98 7.83 -2.91 -0.02 2.96 16 31 H 0.09 3.05 7.67 -2.39 -0.02 3.03 16 32 H 0.09 3.11 5.42 -2.39 -0.01 3.10 16 33 H 0.05 2.48 7.13 -2.39 -0.02 2.46 16 34 H 0.02 1.33 6.80 -2.39 -0.02 1.31 16 35 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 36 H 0.16 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.11 1.35 8.04 -2.39 -0.02 1.33 16 39 H 0.10 0.92 8.12 -2.39 -0.02 0.90 16 40 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 41 H 0.09 1.32 6.19 -2.39 -0.01 1.30 16 42 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.10 0.84 8.09 -2.39 -0.02 0.82 16 47 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -78.46 384.95 1.66 -76.80 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.90 Total: 17.41 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 6.59 Total: 2.06 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -6.00 Total: -99.80 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -1.72 Total: -42.98 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -78.46 1.66 -76.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880087636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.596 kcal (2) G-P(sol) polarization free energy of solvation -78.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds