Wall clock time and date at job start Tue Mar 31 2020 17:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47255 * 2 1 4 4 H 1.08999 * 109.46941 * 52.60275 * 3 2 1 5 5 N 1.46496 * 109.46978 * 292.60568 * 3 2 1 6 6 S 1.65602 * 120.00033 * 126.02414 * 5 3 2 7 7 O 1.42104 * 106.40424 * 42.72519 * 6 5 3 8 8 O 1.42107 * 106.40065 * 175.63908 * 6 5 3 9 9 N 1.65595 * 107.21781 * 289.18307 * 6 5 3 10 10 C 1.46499 * 119.99742 * 259.75687 * 9 6 5 11 11 C 1.52997 * 109.47136 * 95.00703 * 10 9 6 12 12 C 1.46499 * 120.00150 * 79.75808 * 9 6 5 13 13 C 1.50698 * 109.47313 * 94.99723 * 12 9 6 14 14 H 1.08006 * 120.00028 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00199 * 179.97438 * 13 12 9 16 16 N 1.31516 * 119.99638 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00005 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46550 * 90.00566 * 17 15 13 19 19 H 1.48498 * 109.46991 * 210.00010 * 17 15 13 20 20 H 1.48500 * 109.47024 * 330.00659 * 17 15 13 21 21 C 1.53002 * 109.47282 * 172.60286 * 3 2 1 22 22 H 1.09001 * 109.51795 * 304.87546 * 21 3 2 23 23 C 1.53168 * 109.57281 * 184.71873 * 21 3 2 24 24 C 1.53184 * 109.03709 * 183.08219 * 23 21 3 25 25 C 1.53096 * 109.16092 * 56.97968 * 24 23 21 26 26 O 1.42906 * 109.42322 * 302.39922 * 25 24 23 27 27 C 1.42897 * 114.09853 * 61.13963 * 26 25 24 28 28 H 1.09000 * 109.46938 * 302.25538 * 1 2 3 29 29 H 1.09000 * 109.47296 * 62.24949 * 1 2 3 30 30 H 1.08999 * 109.47067 * 182.25265 * 1 2 3 31 31 H 1.08999 * 109.47342 * 240.00303 * 2 1 3 32 32 H 1.08997 * 109.47426 * 119.99785 * 2 1 3 33 33 H 0.97003 * 120.00015 * 306.01611 * 5 3 2 34 34 H 1.09003 * 109.47175 * 215.00707 * 10 9 6 35 35 H 1.08998 * 109.47504 * 335.00079 * 10 9 6 36 36 H 1.08999 * 109.47359 * 54.29848 * 11 10 9 37 37 H 1.09007 * 109.47088 * 174.29864 * 11 10 9 38 38 H 1.08997 * 109.47365 * 294.29384 * 11 10 9 39 39 H 1.08998 * 109.46899 * 214.99678 * 12 9 6 40 40 H 1.08996 * 109.46800 * 334.99771 * 12 9 6 41 41 H 0.97004 * 119.99279 * 179.97438 * 16 15 13 42 42 H 1.08996 * 109.54596 * 302.94551 * 23 21 3 43 43 H 1.09005 * 109.54771 * 63.13064 * 23 21 3 44 44 H 1.08997 * 109.52381 * 176.88066 * 24 23 21 45 45 H 1.08995 * 109.52138 * 297.07748 * 24 23 21 46 46 H 1.08998 * 109.48068 * 62.37825 * 25 24 23 47 47 H 1.08997 * 109.47675 * 182.40227 * 25 24 23 48 48 H 1.09002 * 109.48285 * 178.86944 * 27 26 25 49 49 H 1.08998 * 109.48208 * 58.84938 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5727 1.9931 0.8164 5 7 1.7023 2.0799 -1.2751 6 16 0.8688 3.5108 -1.2904 7 8 1.4413 4.3196 -0.2719 8 8 0.7895 3.9144 -2.6506 9 7 -0.6810 3.1805 -0.8094 10 6 -1.7455 3.0501 -1.8073 11 6 -1.9310 1.5742 -2.1652 12 6 -0.9874 3.0188 0.6140 13 6 -1.4756 4.3296 1.1749 14 1 -1.5506 5.1964 0.5349 15 6 -1.8276 4.4221 2.5047 16 7 -1.7369 3.3665 3.2839 17 14 -2.4321 6.0471 3.2001 18 1 -3.9084 6.1266 3.0604 19 1 -2.0652 6.1381 4.6361 20 1 -1.8035 7.1682 2.4563 21 6 3.5587 1.4465 0.1857 22 1 3.8164 0.8968 1.0910 23 6 4.0574 2.8899 0.3040 24 6 5.5854 2.8834 0.4119 25 6 6.1721 2.1639 -0.8054 26 8 5.6438 0.8378 -0.8739 27 6 4.2237 0.7825 -1.0228 28 1 -0.3633 0.5485 0.8691 29 1 -0.3634 0.4785 -0.9095 30 1 -0.3633 -1.0269 0.0404 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9669 1.6638 -2.1104 34 1 -2.6762 3.4448 -1.3996 35 1 -1.4750 3.6098 -2.7026 36 1 -2.1018 0.9984 -1.2556 37 1 -2.7884 1.4664 -2.8298 38 1 -1.0352 1.2062 -2.6654 39 1 -1.7614 2.2610 0.7352 40 1 -0.0883 2.7083 1.1462 41 1 -1.9842 3.4317 4.2196 42 1 3.7568 3.4532 -0.5794 43 1 3.6298 3.3518 1.1940 44 1 5.9529 3.9091 0.4408 45 1 5.8841 2.3627 1.3217 46 1 5.9069 2.7080 -1.7119 47 1 7.2572 2.1187 -0.7128 48 1 3.9051 -0.2579 -1.0869 49 1 3.9328 1.3083 -1.9322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882760390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:12 Heat of formation + Delta-G solvation = -141.778838 kcal Electronic energy + Delta-G solvation = -30341.500068 eV Core-core repulsion = 26429.768205 eV Total energy + Delta-G solvation = -3911.731864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.73328 -37.06106 -36.57002 -35.99936 -35.15261 -33.16081 -32.69190 -31.45132 -30.80398 -30.03387 -26.65967 -25.89366 -25.05639 -23.35396 -22.67080 -21.74220 -20.72821 -19.88517 -18.95983 -17.41099 -16.78144 -16.38054 -16.28140 -15.99527 -15.69007 -15.23239 -14.70768 -14.49818 -14.27346 -14.13513 -13.82356 -13.53053 -13.31767 -13.11066 -12.90673 -12.55524 -12.28658 -12.22265 -12.07104 -11.80244 -11.69894 -11.51627 -11.38799 -11.32962 -11.21951 -11.02724 -10.94867 -10.88675 -10.79732 -10.69217 -10.53130 -10.42271 -10.35090 -10.14109 -9.98044 -9.73531 -9.42180 -9.11336 -8.45623 -8.06447 -6.08897 -4.11678 1.25688 3.29904 3.36736 3.42741 3.54970 3.84527 4.13149 4.43414 4.66993 4.78859 4.85656 4.97812 5.07044 5.13268 5.23899 5.26607 5.30947 5.32358 5.40558 5.50012 5.54356 5.62052 5.67503 5.73199 5.75165 5.83401 5.88205 5.96418 6.00553 6.01682 6.12261 6.16546 6.21066 6.26654 6.35970 6.50946 6.53674 6.56752 6.60935 6.71030 7.13551 7.16895 7.24076 7.41805 7.62142 7.89898 8.19355 8.90971 9.53663 10.99297 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.004866 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.064548 B = 5752.385809 C = 6410.806815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.128 4.128 3 C 0.158 3.842 4 H 0.105 0.895 5 N -1.126 6.126 6 S 2.777 3.223 7 O -0.960 6.960 8 O -1.004 7.004 9 N -0.991 5.991 10 C 0.119 3.881 11 C -0.173 4.173 12 C 0.260 3.740 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.129 4.129 22 H 0.087 0.913 23 C -0.117 4.117 24 C -0.156 4.156 25 C 0.059 3.941 26 O -0.385 6.385 27 C 0.066 3.934 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.406 0.594 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.048 0.952 39 H 0.036 0.964 40 H 0.034 0.966 41 H 0.263 0.737 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.048 0.952 47 H 0.089 0.911 48 H 0.093 0.907 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.871 -8.010 -8.252 14.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.167 4.167 3 C 0.051 3.949 4 H 0.123 0.877 5 N -0.883 5.883 6 S 2.784 3.216 7 O -0.943 6.943 8 O -0.988 6.988 9 N -0.833 5.833 10 C -0.008 4.008 11 C -0.232 4.232 12 C 0.139 3.861 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.536 5.536 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.150 4.150 22 H 0.106 0.894 23 C -0.155 4.155 24 C -0.193 4.193 25 C -0.017 4.017 26 O -0.304 6.304 27 C -0.011 4.011 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.238 0.762 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.066 0.934 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.251 -7.272 -8.095 14.283 hybrid contribution -0.642 0.551 0.306 0.900 sum 8.610 -6.721 -7.789 13.415 Atomic orbital electron populations 1.22186 0.94835 1.01610 1.04341 1.21884 0.97307 0.95546 1.01992 1.20902 0.93680 0.94667 0.85697 0.87737 1.56320 1.73626 1.45261 1.13101 1.02073 0.73322 0.73494 0.72661 1.93642 1.76778 1.64696 1.59201 1.93524 1.87370 1.81384 1.36544 1.57723 1.22999 1.87132 1.15471 1.21113 0.92684 0.95661 0.91311 1.22386 1.00952 0.98200 1.01695 1.19091 0.97006 0.97367 0.72680 1.21512 1.43621 0.96544 0.94803 0.92217 1.24895 0.95558 0.96660 0.96784 1.69905 1.48566 1.28872 1.06230 0.86554 0.78831 0.84157 0.78262 1.20703 1.21145 1.19752 1.22152 0.95361 0.97636 0.99828 0.89425 1.21639 0.94229 0.95635 1.03949 1.22205 0.96859 1.01100 0.99181 1.22584 0.98279 0.83701 0.97186 1.87894 1.21270 1.27010 1.94227 1.22652 0.80469 1.01169 0.96791 0.90963 0.91206 0.93321 0.91955 0.91090 0.76185 0.89835 0.90701 0.91384 0.92295 0.93309 0.94615 0.94852 0.92758 0.91788 0.90113 0.90955 0.91162 0.93393 0.89270 0.88867 0.93134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.11 37.16 0.34 -1.95 16 2 C -0.13 -1.49 5.16 -26.73 -0.14 -1.63 16 3 C 0.16 2.16 1.93 -67.93 -0.13 2.03 16 4 H 0.10 1.76 5.49 -51.93 -0.28 1.47 16 5 N -1.13 -15.78 4.02 -4.89 -0.02 -15.80 16 6 S 2.78 52.13 5.91 -107.50 -0.64 51.49 16 7 O -0.96 -21.44 15.43 -57.17 -0.88 -22.32 16 8 O -1.00 -20.16 16.55 -57.17 -0.95 -21.11 16 9 N -0.99 -19.14 2.71 -115.67 -0.31 -19.46 16 10 C 0.12 1.99 6.35 -4.04 -0.03 1.96 16 11 C -0.17 -2.34 8.77 37.16 0.33 -2.02 16 12 C 0.26 5.96 3.66 -5.20 -0.02 5.94 16 13 C -0.53 -14.08 9.38 -34.44 -0.32 -14.40 16 14 H 0.06 1.64 7.81 -52.48 -0.41 1.22 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -24.97 13.29 55.43 0.74 -24.23 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.13 -1.63 2.21 -90.48 -0.20 -1.83 16 22 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 23 C -0.12 -1.66 4.56 -26.55 -0.12 -1.78 16 24 C -0.16 -1.83 6.14 -26.59 -0.16 -1.99 16 25 C 0.06 0.65 6.84 37.21 0.25 0.91 16 26 O -0.39 -4.84 10.77 -35.23 -0.38 -5.22 16 27 C 0.07 0.75 5.57 37.20 0.21 0.96 16 28 H 0.07 1.16 6.28 -51.93 -0.33 0.83 16 29 H 0.07 0.92 4.17 -51.93 -0.22 0.70 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.61 7.00 -51.93 -0.36 0.25 16 32 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 33 H 0.41 4.66 7.73 -34.47 -0.27 4.40 16 34 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 35 H 0.07 1.23 6.87 -51.93 -0.36 0.87 16 36 H 0.07 0.96 6.78 -51.93 -0.35 0.60 16 37 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.05 0.61 7.59 -51.93 -0.39 0.21 16 39 H 0.04 0.84 7.70 -51.93 -0.40 0.44 16 40 H 0.03 0.80 5.37 -51.93 -0.28 0.52 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.06 0.98 6.82 -51.93 -0.35 0.63 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.09 0.92 6.87 -51.93 -0.36 0.56 16 49 H 0.05 0.56 6.76 -51.93 -0.35 0.21 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -31.46 377.60 -9.93 -41.40 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.07 Total: 5.36 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.09 Total: -12.19 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.40 Total: -59.49 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -2.21 Total: -48.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 52.13 SS G_CDS: -0.64 Total: 51.49 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.46 -9.93 -41.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.381 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds