Wall clock time and date at job start Tue Mar 31 2020 17:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47255 * 2 1 4 4 H 1.08999 * 109.46941 * 52.60275 * 3 2 1 5 5 N 1.46496 * 109.46978 * 292.60568 * 3 2 1 6 6 S 1.65602 * 120.00033 * 126.02414 * 5 3 2 7 7 O 1.42104 * 106.40424 * 42.72519 * 6 5 3 8 8 O 1.42107 * 106.40065 * 175.63908 * 6 5 3 9 9 N 1.65595 * 107.21781 * 289.18307 * 6 5 3 10 10 C 1.46499 * 119.99742 * 259.75687 * 9 6 5 11 11 C 1.52997 * 109.47136 * 95.00703 * 10 9 6 12 12 C 1.46499 * 120.00150 * 79.75808 * 9 6 5 13 13 C 1.50698 * 109.47313 * 94.99723 * 12 9 6 14 14 H 1.08006 * 120.00028 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00199 * 179.97438 * 13 12 9 16 16 N 1.31516 * 119.99638 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 120.00005 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46550 * 90.00566 * 17 15 13 19 19 H 1.48498 * 109.46991 * 210.00010 * 17 15 13 20 20 H 1.48500 * 109.47024 * 330.00659 * 17 15 13 21 21 C 1.53002 * 109.47282 * 172.60286 * 3 2 1 22 22 H 1.09001 * 109.51795 * 304.87546 * 21 3 2 23 23 C 1.53168 * 109.57281 * 184.71873 * 21 3 2 24 24 C 1.53184 * 109.03709 * 183.08219 * 23 21 3 25 25 C 1.53096 * 109.16092 * 56.97968 * 24 23 21 26 26 O 1.42906 * 109.42322 * 302.39922 * 25 24 23 27 27 C 1.42897 * 114.09853 * 61.13963 * 26 25 24 28 28 H 1.09000 * 109.46938 * 302.25538 * 1 2 3 29 29 H 1.09000 * 109.47296 * 62.24949 * 1 2 3 30 30 H 1.08999 * 109.47067 * 182.25265 * 1 2 3 31 31 H 1.08999 * 109.47342 * 240.00303 * 2 1 3 32 32 H 1.08997 * 109.47426 * 119.99785 * 2 1 3 33 33 H 0.97003 * 120.00015 * 306.01611 * 5 3 2 34 34 H 1.09003 * 109.47175 * 215.00707 * 10 9 6 35 35 H 1.08998 * 109.47504 * 335.00079 * 10 9 6 36 36 H 1.08999 * 109.47359 * 54.29848 * 11 10 9 37 37 H 1.09007 * 109.47088 * 174.29864 * 11 10 9 38 38 H 1.08997 * 109.47365 * 294.29384 * 11 10 9 39 39 H 1.08998 * 109.46899 * 214.99678 * 12 9 6 40 40 H 1.08996 * 109.46800 * 334.99771 * 12 9 6 41 41 H 0.97004 * 119.99279 * 179.97438 * 16 15 13 42 42 H 1.08996 * 109.54596 * 302.94551 * 23 21 3 43 43 H 1.09005 * 109.54771 * 63.13064 * 23 21 3 44 44 H 1.08997 * 109.52381 * 176.88066 * 24 23 21 45 45 H 1.08995 * 109.52138 * 297.07748 * 24 23 21 46 46 H 1.08998 * 109.48068 * 62.37825 * 25 24 23 47 47 H 1.08997 * 109.47675 * 182.40227 * 25 24 23 48 48 H 1.09002 * 109.48285 * 178.86944 * 27 26 25 49 49 H 1.08998 * 109.48208 * 58.84938 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5727 1.9931 0.8164 5 7 1.7023 2.0799 -1.2751 6 16 0.8688 3.5108 -1.2904 7 8 1.4413 4.3196 -0.2719 8 8 0.7895 3.9144 -2.6506 9 7 -0.6810 3.1805 -0.8094 10 6 -1.7455 3.0501 -1.8073 11 6 -1.9310 1.5742 -2.1652 12 6 -0.9874 3.0188 0.6140 13 6 -1.4756 4.3296 1.1749 14 1 -1.5506 5.1964 0.5349 15 6 -1.8276 4.4221 2.5047 16 7 -1.7369 3.3665 3.2839 17 14 -2.4321 6.0471 3.2001 18 1 -3.9084 6.1266 3.0604 19 1 -2.0652 6.1381 4.6361 20 1 -1.8035 7.1682 2.4563 21 6 3.5587 1.4465 0.1857 22 1 3.8164 0.8968 1.0910 23 6 4.0574 2.8899 0.3040 24 6 5.5854 2.8834 0.4119 25 6 6.1721 2.1639 -0.8054 26 8 5.6438 0.8378 -0.8739 27 6 4.2237 0.7825 -1.0228 28 1 -0.3633 0.5485 0.8691 29 1 -0.3634 0.4785 -0.9095 30 1 -0.3633 -1.0269 0.0404 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9669 1.6638 -2.1104 34 1 -2.6762 3.4448 -1.3996 35 1 -1.4750 3.6098 -2.7026 36 1 -2.1018 0.9984 -1.2556 37 1 -2.7884 1.4664 -2.8298 38 1 -1.0352 1.2062 -2.6654 39 1 -1.7614 2.2610 0.7352 40 1 -0.0883 2.7083 1.1462 41 1 -1.9842 3.4317 4.2196 42 1 3.7568 3.4532 -0.5794 43 1 3.6298 3.3518 1.1940 44 1 5.9529 3.9091 0.4408 45 1 5.8841 2.3627 1.3217 46 1 5.9069 2.7080 -1.7119 47 1 7.2572 2.1187 -0.7128 48 1 3.9051 -0.2579 -1.0869 49 1 3.9328 1.3083 -1.9322 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882760390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:11 Heat of formation + Delta-G solvation = -163.884393 kcal Electronic energy + Delta-G solvation = -30342.458637 eV Core-core repulsion = 26429.768205 eV Total energy + Delta-G solvation = -3912.690432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.73621 -38.35840 -38.03584 -37.47663 -36.79863 -34.68597 -34.18057 -32.59988 -31.79451 -31.52494 -28.47072 -26.98188 -26.03593 -24.99130 -23.74779 -23.23546 -21.80285 -20.96980 -20.34863 -19.04837 -18.27407 -18.21240 -17.57913 -17.06738 -16.89295 -16.57960 -16.16201 -15.71598 -15.45359 -15.30347 -15.22360 -14.70123 -14.68455 -14.52670 -14.05281 -13.85383 -13.66705 -13.58035 -13.50322 -13.25126 -13.11678 -12.96946 -12.95200 -12.74092 -12.69740 -12.58385 -12.27673 -12.18482 -12.09470 -12.01197 -11.92482 -11.78559 -11.57991 -11.52607 -11.44016 -11.11554 -10.55350 -10.46261 -10.22603 -9.72497 -8.17368 -6.26684 -0.26182 1.37579 1.40106 1.50002 2.09766 2.41576 2.67045 2.97029 3.13658 3.47489 3.60827 3.79157 3.88123 4.00990 4.02877 4.17320 4.26458 4.33224 4.34641 4.40019 4.50182 4.55805 4.56437 4.69233 4.73955 4.78865 4.79654 4.86598 4.95944 5.03739 5.04453 5.10126 5.15546 5.18116 5.22441 5.24099 5.27996 5.38013 5.42811 5.50168 5.58580 5.63482 5.76770 5.94482 6.18119 6.24412 6.27875 6.81132 7.41273 8.89048 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012547 B = 0.004866 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2231.064548 B = 5752.385809 C = 6410.806815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C 0.159 3.841 4 H 0.068 0.932 5 N -1.105 6.105 6 S 2.789 3.211 7 O -1.002 7.002 8 O -1.016 7.016 9 N -0.995 5.995 10 C 0.110 3.890 11 C -0.165 4.165 12 C 0.282 3.718 13 C -0.545 4.545 14 H 0.045 0.955 15 C 0.018 3.982 16 N -0.919 5.919 17 Si 0.946 3.054 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.279 1.279 21 C -0.124 4.124 22 H 0.094 0.906 23 C -0.122 4.122 24 C -0.152 4.152 25 C 0.058 3.942 26 O -0.394 6.394 27 C 0.067 3.933 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.422 0.578 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.265 0.735 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.050 0.950 47 H 0.112 0.888 48 H 0.117 0.883 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.619 -9.659 -9.484 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.160 4.160 3 C 0.052 3.948 4 H 0.086 0.914 5 N -0.868 5.868 6 S 2.798 3.202 7 O -0.985 6.985 8 O -1.000 7.000 9 N -0.836 5.836 10 C -0.016 4.016 11 C -0.224 4.224 12 C 0.159 3.841 13 C -0.585 4.585 14 H 0.064 0.936 15 C -0.181 4.181 16 N -0.559 5.559 17 Si 0.772 3.228 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.144 4.144 22 H 0.113 0.887 23 C -0.160 4.160 24 C -0.190 4.190 25 C -0.019 4.019 26 O -0.313 6.313 27 C -0.009 4.009 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.259 0.741 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.130 0.870 48 H 0.135 0.865 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.988 -8.924 -9.359 16.339 hybrid contribution -0.857 1.085 0.667 1.535 sum 9.131 -7.838 -8.692 14.845 Atomic orbital electron populations 1.22156 0.96062 1.02073 1.02649 1.21873 0.96079 0.93969 1.04074 1.20911 0.94417 0.95470 0.84029 0.91414 1.55791 1.72656 1.44015 1.14298 1.01436 0.73149 0.73997 0.71658 1.93593 1.77530 1.66813 1.60515 1.93497 1.87579 1.82168 1.36786 1.57612 1.24059 1.87475 1.14481 1.21330 0.91442 0.98274 0.90554 1.22310 1.02758 0.95310 1.02029 1.18617 0.95908 0.95189 0.74391 1.21869 1.43775 0.97667 0.95161 0.93631 1.25576 0.95877 0.99486 0.97203 1.69981 1.49234 1.30232 1.06466 0.85743 0.78927 0.80506 0.77643 1.19351 1.20505 1.20415 1.22115 0.94354 0.96750 1.01194 0.88733 1.21630 0.96188 0.96441 1.01709 1.22192 0.94860 1.01860 1.00093 1.22705 0.99484 0.83117 0.96584 1.87888 1.21597 1.27642 1.94167 1.22736 0.80059 1.02361 0.95791 0.94497 0.91234 0.91578 0.88810 0.89911 0.74135 0.90929 0.90297 0.92043 0.89804 0.91857 0.95358 0.95971 0.92553 0.93401 0.93159 0.90394 0.90697 0.93178 0.87034 0.86529 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 9.11 71.98 0.66 -3.71 16 2 C -0.12 -2.55 5.16 30.60 0.16 -2.40 16 3 C 0.16 4.28 1.93 44.99 0.09 4.37 16 4 H 0.07 2.39 5.49 -2.39 -0.01 2.38 16 5 N -1.10 -30.16 4.02 -169.38 -0.68 -30.84 16 6 S 2.79 106.30 5.91 -56.49 -0.33 105.97 16 7 O -1.00 -46.70 15.43 -128.00 -1.97 -48.67 16 8 O -1.02 -40.49 16.55 -128.00 -2.12 -42.61 16 9 N -1.00 -39.19 2.71 -519.87 -1.41 -40.59 16 10 C 0.11 3.65 6.35 86.38 0.55 4.20 16 11 C -0.17 -4.19 8.77 71.98 0.63 -3.56 16 12 C 0.28 13.39 3.66 85.63 0.31 13.70 16 13 C -0.55 -30.16 9.38 25.60 0.24 -29.92 16 14 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 15 C 0.02 1.01 5.46 84.65 0.46 1.48 16 16 N -0.92 -52.23 13.29 21.45 0.28 -51.95 16 17 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 18 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 21 C -0.12 -3.00 2.21 -10.71 -0.02 -3.02 16 22 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 23 C -0.12 -3.52 4.56 30.71 0.14 -3.38 16 24 C -0.15 -3.46 6.14 30.69 0.19 -3.27 16 25 C 0.06 1.15 6.84 72.01 0.49 1.64 16 26 O -0.39 -8.81 10.77 -148.98 -1.60 -10.41 16 27 C 0.07 1.34 5.57 72.01 0.40 1.74 16 28 H 0.04 1.20 6.28 -2.39 -0.01 1.18 16 29 H 0.07 1.73 4.17 -2.39 -0.01 1.72 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.43 7.00 -2.39 -0.02 1.42 16 32 H 0.08 1.61 8.13 -2.39 -0.02 1.59 16 33 H 0.42 8.79 7.73 -96.74 -0.75 8.04 16 34 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16 35 H 0.08 2.55 6.87 -2.39 -0.02 2.53 16 36 H 0.06 1.65 6.78 -2.39 -0.02 1.64 16 37 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.06 1.41 7.59 -2.39 -0.02 1.40 16 39 H 0.03 1.38 7.70 -2.39 -0.02 1.36 16 40 H 0.02 1.12 5.37 -2.39 -0.01 1.11 16 41 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.05 1.51 6.82 -2.39 -0.02 1.49 16 43 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.12 1.80 6.87 -2.39 -0.02 1.79 16 49 H 0.05 1.05 6.76 -2.39 -0.02 1.03 16 Total: -1.00 -69.20 377.60 -1.31 -70.52 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.20 Total: 24.22 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.30 Total: -22.14 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -1.80 Total: -123.38 kcal Atomic # 8 Polarization: -96.00 SS G_CDS: -5.70 Total: -101.69 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 106.30 SS G_CDS: -0.33 Total: 105.97 kcal Total: -69.20 -1.31 -70.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.369 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds