Wall clock time and date at job start Tue Mar 31 2020 17:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46723 * 2 1 4 4 H 1.08996 * 109.47581 * 57.73300 * 3 2 1 5 5 N 1.46495 * 109.47093 * 297.72893 * 3 2 1 6 6 S 1.65603 * 120.00010 * 104.81045 * 5 3 2 7 7 O 1.42104 * 106.40196 * 172.88309 * 6 5 3 8 8 O 1.42103 * 106.40030 * 305.79822 * 6 5 3 9 9 N 1.65593 * 107.22080 * 59.33814 * 6 5 3 10 10 C 1.46496 * 119.99984 * 260.93656 * 9 6 5 11 11 C 1.53008 * 109.46744 * 112.26275 * 10 9 6 12 12 C 1.46500 * 119.99742 * 80.93585 * 9 6 5 13 13 C 1.50711 * 109.46974 * 95.00476 * 12 9 6 14 14 H 1.08001 * 119.99791 * 359.97438 * 13 12 9 15 15 C 1.37870 * 119.99952 * 180.02562 * 13 12 9 16 16 N 1.31522 * 120.00271 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00067 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47253 * 89.99613 * 17 15 13 19 19 H 1.48500 * 109.47096 * 209.99818 * 17 15 13 20 20 H 1.48506 * 109.46782 * 329.99713 * 17 15 13 21 21 C 1.53000 * 109.47164 * 177.73171 * 3 2 1 22 22 H 1.09001 * 109.57682 * 59.83910 * 21 3 2 23 23 C 1.53171 * 109.52453 * 180.02562 * 21 3 2 24 24 C 1.53178 * 109.03704 * 176.88518 * 23 21 3 25 25 C 1.53087 * 109.16488 * 303.01668 * 24 23 21 26 26 O 1.42906 * 109.41285 * 57.60703 * 25 24 23 27 27 C 1.42898 * 114.10038 * 298.84274 * 26 25 24 28 28 H 1.09004 * 109.46741 * 184.65153 * 1 2 3 29 29 H 1.08998 * 109.47657 * 304.65080 * 1 2 3 30 30 H 1.08994 * 109.47035 * 64.65440 * 1 2 3 31 31 H 1.08995 * 109.47220 * 239.99927 * 2 1 3 32 32 H 1.09001 * 109.47136 * 119.99539 * 2 1 3 33 33 H 0.97000 * 120.00213 * 284.80460 * 5 3 2 34 34 H 1.09006 * 109.47342 * 232.25592 * 10 9 6 35 35 H 1.08998 * 109.47249 * 352.26445 * 10 9 6 36 36 H 1.08997 * 109.47342 * 53.17960 * 11 10 9 37 37 H 1.09005 * 109.46890 * 173.18175 * 11 10 9 38 38 H 1.09000 * 109.46956 * 293.16941 * 11 10 9 39 39 H 1.09000 * 109.47010 * 214.99476 * 12 9 6 40 40 H 1.08997 * 109.47648 * 335.00500 * 12 9 6 41 41 H 0.96999 * 120.00136 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.54155 * 296.74983 * 23 21 3 43 43 H 1.08996 * 109.54524 * 57.01349 * 23 21 3 44 44 H 1.08999 * 109.52619 * 62.92147 * 24 23 21 45 45 H 1.08997 * 109.52270 * 183.11024 * 24 23 21 46 46 H 1.09002 * 109.48132 * 297.62572 * 25 24 23 47 47 H 1.08995 * 109.49826 * 177.59729 * 25 24 23 48 48 H 1.09008 * 109.48253 * 301.17558 * 27 26 25 49 49 H 1.08998 * 109.48196 * 181.14165 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6438 1.9680 0.8689 5 7 1.5968 2.1171 -1.2226 6 16 0.3580 3.2143 -1.1603 7 8 0.2807 3.8060 -2.4500 8 8 -0.7361 2.5497 -0.5434 9 7 0.8205 4.4175 -0.1207 10 6 0.3416 4.4136 1.2637 11 6 1.5154 4.1483 2.2086 12 6 1.7087 5.4858 -0.5856 13 6 0.8848 6.6708 -1.0195 14 1 -0.1926 6.6318 -0.9557 15 6 1.5064 7.8042 -1.4988 16 7 2.8185 7.8515 -1.5770 17 14 0.4852 9.2728 -2.0373 18 1 0.2733 10.1793 -0.8803 19 1 1.1993 10.0039 -3.1147 20 1 -0.8288 8.8026 -2.5449 21 6 3.5689 1.4430 0.0571 22 1 3.9669 0.9155 -0.8097 23 6 4.0807 2.8867 0.0578 24 6 5.6064 2.8759 0.1937 25 6 5.9920 2.1223 1.4691 26 8 5.4590 0.7973 1.4175 27 6 4.0332 0.7446 1.3379 28 1 -0.3633 -1.0243 0.0833 29 1 -0.3634 0.5843 0.8453 30 1 -0.3633 0.4399 -0.9287 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0290 1.9212 -2.0685 34 1 -0.1015 5.3817 1.4977 35 1 -0.4078 3.6317 1.3867 36 1 2.3163 4.8580 2.0014 37 1 1.1845 4.2649 3.2407 38 1 1.8814 3.1328 2.0571 39 1 2.3742 5.7833 0.2247 40 1 2.2997 5.1263 -1.4280 41 1 3.2558 8.6491 -1.9138 42 1 3.8013 3.3731 -0.8768 43 1 3.6437 3.4281 0.8968 44 1 6.0456 2.3777 -0.6706 45 1 5.9743 3.9003 0.2506 46 1 5.5864 2.6437 2.3362 47 1 7.0780 2.0743 1.5491 48 1 3.6019 1.2481 2.2033 49 1 3.7082 -0.2956 1.3231 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882760392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:17 Heat of formation + Delta-G solvation = -141.771364 kcal Electronic energy + Delta-G solvation = -30408.762837 eV Core-core repulsion = 26497.031298 eV Total energy + Delta-G solvation = -3911.731539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.76175 -37.19816 -36.42016 -36.10241 -35.16093 -33.18022 -32.66262 -31.57784 -30.98227 -29.95135 -26.74793 -25.92158 -24.81751 -23.30408 -22.87694 -21.69168 -20.86244 -20.14984 -18.78459 -17.41957 -16.72447 -16.56785 -16.35645 -16.03174 -15.61508 -15.26119 -14.76386 -14.53706 -14.34722 -14.21813 -13.99098 -13.65897 -13.34839 -13.14300 -12.90213 -12.55534 -12.39264 -12.09629 -12.04775 -11.86704 -11.76199 -11.63387 -11.35540 -11.33849 -11.15923 -11.09488 -10.95333 -10.88737 -10.77816 -10.72166 -10.60626 -10.48381 -10.38131 -10.15421 -9.98059 -9.74289 -9.47195 -9.21201 -8.45340 -8.08793 -6.07837 -4.10679 1.25779 3.30315 3.37041 3.42582 3.48373 3.80064 4.13628 4.44186 4.52931 4.72867 4.80901 4.98004 4.99140 5.04709 5.13002 5.18123 5.26971 5.28870 5.34530 5.41745 5.47332 5.58019 5.63059 5.68298 5.71287 5.77855 5.81147 5.87082 5.93531 5.96381 6.04683 6.09975 6.14309 6.24801 6.29568 6.42237 6.44498 6.58986 6.61710 6.63940 7.11999 7.14809 7.24897 7.42727 7.61660 7.90564 8.20268 8.91694 9.54444 11.00559 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.005170 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.899911 B = 5414.958313 C = 6756.664356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.160 3.840 4 H 0.090 0.910 5 N -1.125 6.125 6 S 2.776 3.224 7 O -0.968 6.968 8 O -0.994 6.994 9 N -0.990 5.990 10 C 0.116 3.884 11 C -0.173 4.173 12 C 0.263 3.737 13 C -0.525 4.525 14 H 0.060 0.940 15 C 0.062 3.938 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.128 4.128 22 H 0.083 0.917 23 C -0.123 4.123 24 C -0.154 4.154 25 C 0.059 3.941 26 O -0.384 6.384 27 C 0.066 3.934 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.411 0.589 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.263 0.737 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.050 0.950 47 H 0.090 0.910 48 H 0.051 0.949 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.806 -14.494 7.621 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.052 3.948 4 H 0.107 0.893 5 N -0.882 5.882 6 S 2.784 3.216 7 O -0.952 6.952 8 O -0.977 6.977 9 N -0.833 5.833 10 C -0.011 4.011 11 C -0.231 4.231 12 C 0.141 3.859 13 C -0.565 4.565 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.536 5.536 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.149 4.149 22 H 0.101 0.899 23 C -0.160 4.160 24 C -0.192 4.192 25 C -0.017 4.017 26 O -0.302 6.302 27 C -0.011 4.011 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.108 0.892 48 H 0.069 0.931 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.139 -14.535 7.253 16.545 hybrid contribution 0.010 1.223 -0.609 1.366 sum 3.150 -13.312 6.645 15.208 Atomic orbital electron populations 1.21851 0.94324 1.00655 1.03942 1.22052 0.97439 0.96127 1.02169 1.20798 0.93344 0.93464 0.87174 0.89262 1.56218 1.57070 1.59612 1.15297 1.02084 0.73458 0.72494 0.73537 1.93647 1.85795 1.76010 1.39711 1.93547 1.51175 1.74821 1.78144 1.57668 1.64319 1.39560 1.21712 1.21148 0.95779 1.03126 0.80996 1.22348 1.00359 1.01288 0.99155 1.18960 0.88352 0.83897 0.94705 1.21500 0.93758 0.98815 1.42386 0.92222 1.24908 0.94970 0.98681 0.95446 1.69910 1.07846 1.29099 1.46766 0.86543 0.80536 0.82327 0.78334 1.20678 1.21130 1.19724 1.22135 0.95020 0.97940 0.99763 0.89893 1.21733 0.94727 0.95296 1.04239 1.22167 0.97052 1.01361 0.98637 1.22607 0.98796 0.83361 0.96955 1.87912 1.20436 1.27304 1.94595 1.22671 0.81308 1.01175 0.95987 0.93579 0.91870 0.91798 0.91578 0.91224 0.75606 0.90551 0.90149 0.91334 0.92243 0.93242 0.94587 0.94979 0.92784 0.90374 0.90852 0.91368 0.90481 0.93183 0.89222 0.93054 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.37 37.16 0.31 -1.54 16 2 C -0.14 -1.44 5.35 -26.73 -0.14 -1.58 16 3 C 0.16 1.89 1.97 -67.93 -0.13 1.75 16 4 H 0.09 1.08 4.86 -51.93 -0.25 0.83 16 5 N -1.12 -15.85 4.25 -4.89 -0.02 -15.87 16 6 S 2.78 52.06 5.79 -107.50 -0.62 51.44 16 7 O -0.97 -22.80 17.45 -57.17 -1.00 -23.79 16 8 O -0.99 -18.76 12.73 -57.17 -0.73 -19.49 16 9 N -0.99 -19.06 2.91 -115.65 -0.34 -19.39 16 10 C 0.12 1.88 6.31 -4.04 -0.03 1.86 16 11 C -0.17 -2.29 9.14 37.16 0.34 -1.95 16 12 C 0.26 6.16 5.00 -5.19 -0.03 6.13 16 13 C -0.53 -14.34 9.38 -34.44 -0.32 -14.66 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.13 -1.41 2.14 -90.48 -0.19 -1.61 16 22 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 23 C -0.12 -1.57 5.10 -26.55 -0.14 -1.71 16 24 C -0.15 -1.79 6.14 -26.59 -0.16 -1.96 16 25 C 0.06 0.63 6.84 37.20 0.25 0.88 16 26 O -0.38 -4.50 10.77 -35.23 -0.38 -4.88 16 27 C 0.07 0.67 5.71 37.21 0.21 0.88 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.83 7.63 -51.93 -0.40 0.43 16 30 H 0.06 0.91 6.25 -51.93 -0.32 0.59 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.59 6.38 -51.93 -0.33 0.26 16 33 H 0.41 5.22 8.93 -34.47 -0.31 4.91 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.08 1.21 6.65 -51.93 -0.35 0.87 16 36 H 0.07 1.01 6.49 -51.93 -0.34 0.68 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.58 4.88 -51.93 -0.25 0.32 16 39 H 0.04 0.85 6.75 -51.93 -0.35 0.50 16 40 H 0.03 0.81 7.75 -51.93 -0.40 0.40 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.08 1.17 7.62 -51.93 -0.40 0.77 16 43 H 0.07 0.97 6.16 -51.93 -0.32 0.66 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 49 H 0.10 0.82 6.53 -51.93 -0.34 0.48 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -32.23 379.36 -9.90 -42.13 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.13 Total: 4.11 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -0.12 Total: -11.89 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.38 Total: -59.99 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -2.10 Total: -48.16 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 52.06 SS G_CDS: -0.62 Total: 51.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.23 -9.90 -42.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.638 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds