Wall clock time and date at job start Tue Mar 31 2020 17:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46723 * 2 1 4 4 H 1.08996 * 109.47581 * 57.73300 * 3 2 1 5 5 N 1.46495 * 109.47093 * 297.72893 * 3 2 1 6 6 S 1.65603 * 120.00010 * 104.81045 * 5 3 2 7 7 O 1.42104 * 106.40196 * 172.88309 * 6 5 3 8 8 O 1.42103 * 106.40030 * 305.79822 * 6 5 3 9 9 N 1.65593 * 107.22080 * 59.33814 * 6 5 3 10 10 C 1.46496 * 119.99984 * 260.93656 * 9 6 5 11 11 C 1.53008 * 109.46744 * 112.26275 * 10 9 6 12 12 C 1.46500 * 119.99742 * 80.93585 * 9 6 5 13 13 C 1.50711 * 109.46974 * 95.00476 * 12 9 6 14 14 H 1.08001 * 119.99791 * 359.97438 * 13 12 9 15 15 C 1.37870 * 119.99952 * 180.02562 * 13 12 9 16 16 N 1.31522 * 120.00271 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00067 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47253 * 89.99613 * 17 15 13 19 19 H 1.48500 * 109.47096 * 209.99818 * 17 15 13 20 20 H 1.48506 * 109.46782 * 329.99713 * 17 15 13 21 21 C 1.53000 * 109.47164 * 177.73171 * 3 2 1 22 22 H 1.09001 * 109.57682 * 59.83910 * 21 3 2 23 23 C 1.53171 * 109.52453 * 180.02562 * 21 3 2 24 24 C 1.53178 * 109.03704 * 176.88518 * 23 21 3 25 25 C 1.53087 * 109.16488 * 303.01668 * 24 23 21 26 26 O 1.42906 * 109.41285 * 57.60703 * 25 24 23 27 27 C 1.42898 * 114.10038 * 298.84274 * 26 25 24 28 28 H 1.09004 * 109.46741 * 184.65153 * 1 2 3 29 29 H 1.08998 * 109.47657 * 304.65080 * 1 2 3 30 30 H 1.08994 * 109.47035 * 64.65440 * 1 2 3 31 31 H 1.08995 * 109.47220 * 239.99927 * 2 1 3 32 32 H 1.09001 * 109.47136 * 119.99539 * 2 1 3 33 33 H 0.97000 * 120.00213 * 284.80460 * 5 3 2 34 34 H 1.09006 * 109.47342 * 232.25592 * 10 9 6 35 35 H 1.08998 * 109.47249 * 352.26445 * 10 9 6 36 36 H 1.08997 * 109.47342 * 53.17960 * 11 10 9 37 37 H 1.09005 * 109.46890 * 173.18175 * 11 10 9 38 38 H 1.09000 * 109.46956 * 293.16941 * 11 10 9 39 39 H 1.09000 * 109.47010 * 214.99476 * 12 9 6 40 40 H 1.08997 * 109.47648 * 335.00500 * 12 9 6 41 41 H 0.96999 * 120.00136 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.54155 * 296.74983 * 23 21 3 43 43 H 1.08996 * 109.54524 * 57.01349 * 23 21 3 44 44 H 1.08999 * 109.52619 * 62.92147 * 24 23 21 45 45 H 1.08997 * 109.52270 * 183.11024 * 24 23 21 46 46 H 1.09002 * 109.48132 * 297.62572 * 25 24 23 47 47 H 1.08995 * 109.49826 * 177.59729 * 25 24 23 48 48 H 1.09008 * 109.48253 * 301.17558 * 27 26 25 49 49 H 1.08998 * 109.48196 * 181.14165 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6438 1.9680 0.8689 5 7 1.5968 2.1171 -1.2226 6 16 0.3580 3.2143 -1.1603 7 8 0.2807 3.8060 -2.4500 8 8 -0.7361 2.5497 -0.5434 9 7 0.8205 4.4175 -0.1207 10 6 0.3416 4.4136 1.2637 11 6 1.5154 4.1483 2.2086 12 6 1.7087 5.4858 -0.5856 13 6 0.8848 6.6708 -1.0195 14 1 -0.1926 6.6318 -0.9557 15 6 1.5064 7.8042 -1.4988 16 7 2.8185 7.8515 -1.5770 17 14 0.4852 9.2728 -2.0373 18 1 0.2733 10.1793 -0.8803 19 1 1.1993 10.0039 -3.1147 20 1 -0.8288 8.8026 -2.5449 21 6 3.5689 1.4430 0.0571 22 1 3.9669 0.9155 -0.8097 23 6 4.0807 2.8867 0.0578 24 6 5.6064 2.8759 0.1937 25 6 5.9920 2.1223 1.4691 26 8 5.4590 0.7973 1.4175 27 6 4.0332 0.7446 1.3379 28 1 -0.3633 -1.0243 0.0833 29 1 -0.3634 0.5843 0.8453 30 1 -0.3633 0.4399 -0.9287 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 2.0290 1.9212 -2.0685 34 1 -0.1015 5.3817 1.4977 35 1 -0.4078 3.6317 1.3867 36 1 2.3163 4.8580 2.0014 37 1 1.1845 4.2649 3.2407 38 1 1.8814 3.1328 2.0571 39 1 2.3742 5.7833 0.2247 40 1 2.2997 5.1263 -1.4280 41 1 3.2558 8.6491 -1.9138 42 1 3.8013 3.3731 -0.8768 43 1 3.6437 3.4281 0.8968 44 1 6.0456 2.3777 -0.6706 45 1 5.9743 3.9003 0.2506 46 1 5.5864 2.6437 2.3362 47 1 7.0780 2.0743 1.5491 48 1 3.6019 1.2481 2.2033 49 1 3.7082 -0.2956 1.3231 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882760392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:16 Heat of formation + Delta-G solvation = -164.532135 kcal Electronic energy + Delta-G solvation = -30409.749818 eV Core-core repulsion = 26497.031298 eV Total energy + Delta-G solvation = -3912.718521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66851 -38.43644 -37.83626 -37.60120 -36.79752 -34.68886 -34.11893 -32.67681 -31.86013 -31.43565 -28.58415 -26.89592 -25.71073 -25.06068 -23.76310 -23.17032 -21.85064 -21.10938 -20.19471 -19.00272 -18.36196 -18.14621 -17.59280 -17.04684 -16.99901 -16.51670 -16.14643 -15.67023 -15.51598 -15.33441 -15.17301 -14.90183 -14.70089 -14.48959 -14.06312 -13.72991 -13.64550 -13.53745 -13.39514 -13.29990 -13.23185 -12.97511 -12.80375 -12.71371 -12.69074 -12.57246 -12.30511 -12.20736 -12.11836 -11.95112 -11.76543 -11.74197 -11.70070 -11.49018 -11.44549 -11.04734 -10.57792 -10.39617 -10.29257 -9.76003 -8.19260 -6.29154 -0.24608 1.36928 1.39490 1.49653 2.05257 2.40574 2.69180 2.99806 3.11706 3.53920 3.58890 3.82096 3.89351 3.99574 4.08009 4.15422 4.24630 4.27692 4.41745 4.44141 4.48212 4.52353 4.60341 4.70761 4.72443 4.80464 4.83351 4.85231 4.96659 5.04197 5.06424 5.12692 5.18182 5.19448 5.20205 5.23209 5.32277 5.39248 5.43265 5.52012 5.62946 5.64668 5.74409 5.94541 6.13206 6.21074 6.30759 6.78852 7.38997 8.87531 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.005170 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.899911 B = 5414.958313 C = 6756.664356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C 0.155 3.845 4 H 0.089 0.911 5 N -1.112 6.112 6 S 2.789 3.211 7 O -1.022 7.022 8 O -0.995 6.995 9 N -0.994 5.994 10 C 0.108 3.892 11 C -0.164 4.164 12 C 0.285 3.715 13 C -0.546 4.546 14 H 0.047 0.953 15 C 0.015 3.985 16 N -0.921 5.921 17 Si 0.949 3.051 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.278 1.278 21 C -0.118 4.118 22 H 0.087 0.913 23 C -0.125 4.125 24 C -0.153 4.153 25 C 0.061 3.939 26 O -0.394 6.394 27 C 0.065 3.935 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.418 0.582 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.032 0.968 40 H 0.011 0.989 41 H 0.266 0.734 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -16.096 9.212 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.048 3.952 4 H 0.106 0.894 5 N -0.873 5.873 6 S 2.798 3.202 7 O -1.006 7.006 8 O -0.978 6.978 9 N -0.835 5.835 10 C -0.018 4.018 11 C -0.223 4.223 12 C 0.161 3.839 13 C -0.585 4.585 14 H 0.065 0.935 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.775 3.225 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.203 1.203 21 C -0.138 4.138 22 H 0.105 0.895 23 C -0.163 4.163 24 C -0.191 4.191 25 C -0.015 4.015 26 O -0.313 6.313 27 C -0.012 4.012 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.253 0.747 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.123 0.877 48 H 0.079 0.921 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.514 -16.142 8.866 18.749 hybrid contribution -0.127 1.655 -1.085 1.983 sum 3.387 -14.488 7.781 16.790 Atomic orbital electron populations 1.21859 0.95782 1.01394 1.02094 1.22050 0.95991 0.94949 1.04187 1.21065 0.93999 0.94359 0.85759 0.89354 1.55812 1.56260 1.58449 1.16795 1.01444 0.73993 0.72527 0.72221 1.93571 1.86910 1.77491 1.42595 1.93545 1.51821 1.74578 1.77865 1.57531 1.63793 1.39100 1.23071 1.21386 0.97412 1.03004 0.79976 1.22269 0.98426 1.01819 0.99742 1.18434 0.88031 0.83746 0.93651 1.21867 0.93588 1.00466 1.42617 0.93457 1.25643 0.96052 1.01197 0.95594 1.69992 1.08911 1.29866 1.47367 0.85690 0.78778 0.79593 0.78459 1.19127 1.20487 1.20288 1.22053 0.94096 0.96753 1.00942 0.89508 1.21707 0.95767 0.96379 1.02416 1.22145 0.96082 1.01254 0.99580 1.22652 0.99788 0.82927 0.96163 1.87907 1.21211 1.27644 1.94528 1.22807 0.80734 1.02392 0.95293 0.91744 0.92848 0.94361 0.90481 0.88223 0.74670 0.91874 0.88761 0.93139 0.89532 0.91429 0.95001 0.97138 0.92538 0.93266 0.91477 0.91449 0.91241 0.92598 0.87725 0.92132 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.37 71.98 0.60 -2.86 16 2 C -0.13 -2.34 5.35 30.60 0.16 -2.17 16 3 C 0.15 3.36 1.97 44.99 0.09 3.45 16 4 H 0.09 1.95 4.86 -2.39 -0.01 1.94 16 5 N -1.11 -31.07 4.25 -169.40 -0.72 -31.79 16 6 S 2.79 106.53 5.79 -56.49 -0.33 106.20 16 7 O -1.02 -50.01 17.45 -128.00 -2.23 -52.25 16 8 O -0.99 -37.47 12.73 -128.00 -1.63 -39.10 16 9 N -0.99 -38.99 2.91 -519.82 -1.51 -40.50 16 10 C 0.11 3.46 6.31 86.38 0.55 4.00 16 11 C -0.16 -4.12 9.14 71.98 0.66 -3.46 16 12 C 0.28 13.82 5.00 85.64 0.43 14.25 16 13 C -0.55 -30.65 9.38 25.60 0.24 -30.41 16 14 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 15 C 0.01 0.82 5.46 84.65 0.46 1.28 16 16 N -0.92 -53.22 13.29 21.45 0.28 -52.93 16 17 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 21 C -0.12 -2.37 2.14 -10.70 -0.02 -2.39 16 22 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 23 C -0.13 -3.16 5.10 30.71 0.16 -3.00 16 24 C -0.15 -3.44 6.14 30.68 0.19 -3.26 16 25 C 0.06 1.16 6.84 72.01 0.49 1.66 16 26 O -0.39 -8.08 10.77 -148.98 -1.60 -9.69 16 27 C 0.06 1.09 5.71 72.02 0.41 1.50 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.29 7.63 -2.39 -0.02 1.27 16 30 H 0.04 1.05 6.25 -2.39 -0.01 1.03 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.10 1.22 6.38 -2.39 -0.02 1.20 16 33 H 0.42 10.66 8.93 -96.74 -0.86 9.80 16 34 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.09 2.75 6.65 -2.39 -0.02 2.74 16 36 H 0.05 1.47 6.49 -2.39 -0.02 1.45 16 37 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.07 1.43 4.88 -2.39 -0.01 1.42 16 39 H 0.03 1.57 6.75 -2.39 -0.02 1.55 16 40 H 0.01 0.56 7.75 -2.39 -0.02 0.54 16 41 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.05 1.52 7.62 -2.39 -0.02 1.50 16 43 H 0.07 1.75 6.16 -2.39 -0.01 1.74 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.12 1.47 6.53 -2.39 -0.02 1.46 16 Total: -1.00 -70.59 379.36 -1.22 -71.81 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.08 Total: 22.81 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: 4.41 Total: -21.40 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -1.95 Total: -125.22 kcal Atomic # 8 Polarization: -95.57 SS G_CDS: -5.47 Total: -101.04 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 106.53 SS G_CDS: -0.33 Total: 106.20 kcal Total: -70.59 -1.22 -71.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.727 kcal (2) G-P(sol) polarization free energy of solvation -70.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds