Wall clock time and date at job start Tue Mar 31 2020 17:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47086 * 2 1 4 4 H 1.09000 * 109.46487 * 303.72855 * 3 2 1 5 5 N 1.46494 * 109.47246 * 183.73147 * 3 2 1 6 6 S 1.65598 * 120.00642 * 94.39402 * 5 3 2 7 7 O 1.42098 * 106.40723 * 177.39929 * 6 5 3 8 8 O 1.42111 * 106.39988 * 310.32131 * 6 5 3 9 9 N 1.65597 * 107.21619 * 63.85444 * 6 5 3 10 10 C 1.46507 * 119.99757 * 90.00476 * 9 6 5 11 11 C 1.46499 * 120.00364 * 270.00491 * 9 6 5 12 12 H 1.08998 * 109.47072 * 0.02562 * 11 9 6 13 13 C 1.53002 * 109.47018 * 239.99734 * 11 9 6 14 14 C 1.50697 * 109.47213 * 120.00250 * 11 9 6 15 15 H 1.08000 * 120.00138 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00007 * 180.02562 * 14 11 9 17 17 N 1.31513 * 120.00225 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99894 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47298 * 90.00075 * 18 16 14 20 20 H 1.48498 * 109.47121 * 209.99903 * 18 16 14 21 21 H 1.48497 * 109.47080 * 330.00154 * 18 16 14 22 22 C 1.53002 * 109.47114 * 63.72676 * 3 2 1 23 23 H 1.08995 * 109.52029 * 305.12525 * 22 3 2 24 24 C 1.53179 * 109.52088 * 185.00084 * 22 3 2 25 25 C 1.53180 * 109.03512 * 183.11622 * 24 22 3 26 26 C 1.53090 * 109.16399 * 56.97883 * 25 24 22 27 27 O 1.42901 * 109.41809 * 302.39426 * 26 25 24 28 28 C 1.42905 * 114.09952 * 61.15492 * 27 26 25 29 29 H 1.09009 * 109.46810 * 293.96046 * 1 2 3 30 30 H 1.09005 * 109.47492 * 53.95608 * 1 2 3 31 31 H 1.09000 * 109.46994 * 173.96133 * 1 2 3 32 32 H 1.08997 * 109.47876 * 119.99605 * 2 1 3 33 33 H 1.08999 * 109.47187 * 240.00201 * 2 1 3 34 34 H 0.97006 * 119.99689 * 274.39701 * 5 3 2 35 35 H 1.09004 * 109.47101 * 90.00014 * 10 9 6 36 36 H 1.08990 * 109.47238 * 210.00081 * 10 9 6 37 37 H 1.08997 * 109.47047 * 330.00111 * 10 9 6 38 38 H 1.09001 * 109.46990 * 179.97438 * 13 11 9 39 39 H 1.08998 * 109.47471 * 300.00089 * 13 11 9 40 40 H 1.09004 * 109.46772 * 60.00127 * 13 11 9 41 41 H 0.97004 * 120.00112 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.54102 * 302.98499 * 24 22 3 43 43 H 1.08998 * 109.54072 * 63.15761 * 24 22 3 44 44 H 1.08997 * 109.52010 * 176.88724 * 25 24 22 45 45 H 1.09004 * 109.51746 * 297.07233 * 25 24 22 46 46 H 1.08999 * 109.47864 * 62.37366 * 26 25 24 47 47 H 1.08998 * 109.47849 * 182.41038 * 26 25 24 48 48 H 1.09002 * 109.48139 * 178.86145 * 28 27 26 49 49 H 1.08993 * 109.48056 * 58.82807 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6230 1.9752 -0.8547 5 7 3.5022 1.4436 -0.0899 6 16 4.2411 1.5850 -1.5651 7 8 5.6391 1.6148 -1.3125 8 8 3.6251 0.6277 -2.4158 9 7 3.8436 3.0738 -2.1717 10 6 4.6901 4.2334 -1.8799 11 6 2.6455 3.2313 -2.9999 12 1 2.1477 2.2675 -3.1058 13 6 3.0456 3.7539 -4.3812 14 6 1.7071 4.2115 -2.3446 15 1 1.9760 4.6709 -1.4049 16 6 0.5048 4.5211 -2.9442 17 7 0.1771 3.9614 -4.0882 18 14 -0.6588 5.7357 -2.1314 19 1 -0.3522 7.1088 -2.6065 20 1 -2.0595 5.3911 -2.4842 21 1 -0.4898 5.6726 -0.6575 22 6 1.6080 2.1363 1.2935 23 1 0.5268 2.0562 1.4061 24 6 2.0091 3.6137 1.2406 25 6 1.6419 4.2789 2.5707 26 6 2.3313 3.5302 3.7143 27 8 1.9391 2.1564 3.6873 28 6 2.2988 1.4703 2.4864 29 1 -0.3633 0.4174 0.9392 30 1 -0.3634 0.6047 -0.8310 31 1 -0.3633 -1.0220 -0.1081 32 1 1.8934 -0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 4.0376 1.3614 0.7148 35 1 5.4565 4.3266 -2.6494 36 1 4.0784 5.1353 -1.8654 37 1 5.1654 4.1010 -0.9080 38 1 2.1542 3.8706 -4.9976 39 1 3.5432 4.7178 -4.2750 40 1 3.7244 3.0448 -4.8552 41 1 -0.6687 4.1795 -4.5103 42 1 3.0838 3.6940 1.0771 43 1 1.4785 4.1066 0.4260 44 1 1.9739 5.3171 2.5625 45 1 0.5615 4.2421 2.7102 46 1 3.4125 3.6019 3.5959 47 1 2.0395 3.9730 4.6666 48 1 1.9835 0.4291 2.5543 49 1 3.3794 1.5150 2.3521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882760574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:25 Heat of formation + Delta-G solvation = -139.986389 kcal Electronic energy + Delta-G solvation = -30749.089289 eV Core-core repulsion = 26837.435152 eV Total energy + Delta-G solvation = -3911.654137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.71908 -36.96440 -36.45448 -36.15549 -35.22832 -33.01059 -32.65286 -31.90651 -30.39242 -29.11389 -25.64216 -25.45481 -25.32932 -24.87087 -23.17311 -20.79955 -20.70622 -19.62088 -18.92879 -17.29021 -16.85008 -16.55555 -16.21722 -15.88869 -15.58677 -15.05270 -14.57737 -14.50623 -14.26051 -14.18616 -13.57538 -13.45333 -13.19238 -12.82755 -12.69710 -12.46520 -12.27805 -11.98849 -11.79729 -11.76372 -11.62498 -11.47043 -11.41335 -11.27053 -11.21471 -11.07981 -10.99618 -10.90253 -10.82015 -10.63832 -10.50492 -10.35742 -10.23426 -10.04924 -9.98164 -9.43141 -9.19909 -9.00721 -8.54933 -7.99397 -6.15910 -4.24769 1.26367 3.18339 3.26421 3.27589 3.52014 3.88327 4.14790 4.28231 4.83403 4.87422 4.92103 5.04670 5.07465 5.15233 5.19621 5.33537 5.36512 5.44029 5.52870 5.57385 5.64908 5.71604 5.82401 5.83644 5.92130 6.02517 6.10059 6.15240 6.21520 6.24459 6.31766 6.36834 6.47373 6.53708 6.59493 6.64524 6.70733 6.85685 6.86059 7.09584 7.21166 7.26369 7.50481 7.58394 7.72837 8.00050 8.20346 8.79094 9.41781 10.88700 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.006990 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.760660 B = 4004.924580 C = 5245.463419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.158 3.842 4 H 0.116 0.884 5 N -1.126 6.126 6 S 2.780 3.220 7 O -1.003 7.003 8 O -0.980 6.980 9 N -0.990 5.990 10 C 0.109 3.891 11 C 0.267 3.733 12 H 0.059 0.941 13 C -0.145 4.145 14 C -0.527 4.527 15 H 0.067 0.933 16 C 0.068 3.932 17 N -0.883 5.883 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.272 1.272 22 C -0.121 4.121 23 H 0.091 0.909 24 C -0.122 4.122 25 C -0.155 4.155 26 C 0.060 3.940 27 O -0.385 6.385 28 C 0.064 3.936 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.404 0.596 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.032 0.968 40 H 0.011 0.989 41 H 0.264 0.736 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -1.668 11.393 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C 0.050 3.950 4 H 0.133 0.867 5 N -0.885 5.885 6 S 2.789 3.211 7 O -0.987 6.987 8 O -0.963 6.963 9 N -0.833 5.833 10 C -0.037 4.037 11 C 0.164 3.836 12 H 0.076 0.924 13 C -0.205 4.205 14 C -0.566 4.566 15 H 0.085 0.915 16 C -0.135 4.135 17 N -0.521 5.521 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.141 4.141 23 H 0.109 0.891 24 C -0.160 4.160 25 C -0.193 4.193 26 C -0.016 4.016 27 O -0.304 6.304 28 C -0.012 4.012 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.237 0.763 35 H 0.060 0.940 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.830 -2.411 10.805 11.427 hybrid contribution -0.549 1.224 0.642 1.487 sum 2.281 -1.187 11.447 11.732 Atomic orbital electron populations 1.21782 0.95248 1.01690 1.02266 1.22083 0.96410 0.96920 1.02773 1.20933 0.78497 0.95835 0.99691 0.86662 1.56240 1.15018 1.90889 1.26344 1.01901 0.72371 0.73867 0.73008 1.93541 1.31507 1.87783 1.85897 1.93585 1.77858 1.59478 1.65385 1.57690 1.37550 1.23897 1.64143 1.21148 0.93557 0.90586 0.98448 1.18750 0.79567 0.98237 0.87043 0.92370 1.22051 1.01152 0.97905 0.99342 1.21399 1.01816 1.25994 1.07391 0.91469 1.24893 0.97809 0.95975 0.94835 1.69877 1.23089 1.42630 1.16474 0.86656 0.80357 0.81497 0.79844 1.20780 1.21243 1.19632 1.22003 1.01773 0.95934 0.94411 0.89075 1.21742 1.02150 0.94481 0.97577 1.22194 1.01531 0.99770 0.95823 1.22573 0.98007 0.82160 0.98905 1.87902 1.81360 1.22877 1.38219 1.22688 0.98102 0.96259 0.84190 0.92741 0.91678 0.92887 0.92172 0.90366 0.76293 0.94037 0.90224 0.93353 0.88978 0.94918 0.96996 0.92614 0.91753 0.89114 0.91136 0.91317 0.93457 0.89462 0.88787 0.93448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.49 37.15 0.35 -1.66 16 2 C -0.14 -2.01 5.59 -26.73 -0.15 -2.16 16 3 C 0.16 2.39 1.99 -67.93 -0.14 2.25 16 4 H 0.12 2.11 6.25 -51.93 -0.32 1.78 16 5 N -1.13 -16.92 4.90 -4.89 -0.02 -16.94 16 6 S 2.78 52.32 5.99 -107.50 -0.64 51.68 16 7 O -1.00 -20.20 17.21 -57.17 -0.98 -21.19 16 8 O -0.98 -21.46 15.88 -57.17 -0.91 -22.37 16 9 N -0.99 -19.23 3.12 -115.85 -0.36 -19.59 16 10 C 0.11 1.85 9.28 59.85 0.56 2.41 16 11 C 0.27 6.03 1.89 -69.08 -0.13 5.90 16 12 H 0.06 1.47 6.77 -51.93 -0.35 1.12 16 13 C -0.14 -3.31 8.97 37.16 0.33 -2.98 16 14 C -0.53 -12.11 7.18 -34.44 -0.25 -12.36 16 15 H 0.07 1.48 5.77 -52.49 -0.30 1.17 16 16 C 0.07 1.66 5.30 -17.82 -0.09 1.56 16 17 N -0.88 -22.83 11.32 55.43 0.63 -22.21 16 18 Si 0.89 19.10 29.54 -169.99 -5.02 14.08 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 C -0.12 -1.63 2.06 -90.48 -0.19 -1.82 16 23 H 0.09 1.25 6.43 -51.93 -0.33 0.91 16 24 C -0.12 -1.72 5.23 -26.55 -0.14 -1.85 16 25 C -0.16 -1.89 6.14 -26.59 -0.16 -2.06 16 26 C 0.06 0.68 6.84 37.20 0.25 0.93 16 27 O -0.38 -5.02 10.77 -35.23 -0.38 -5.40 16 28 C 0.06 0.78 5.62 37.21 0.21 0.99 16 29 H 0.05 0.65 6.72 -51.92 -0.35 0.30 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.72 6.47 -51.93 -0.34 0.39 16 33 H 0.08 1.26 7.53 -51.93 -0.39 0.87 16 34 H 0.40 5.11 6.70 -34.47 -0.23 4.88 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.35 7.02 -51.93 -0.36 0.99 16 37 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 38 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 39 H 0.03 0.70 7.67 -51.93 -0.40 0.30 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.26 6.59 8.31 -40.82 -0.34 6.26 16 42 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 43 H 0.09 1.51 6.53 -51.93 -0.34 1.17 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 1.05 6.62 -51.93 -0.34 0.70 16 49 H 0.05 0.54 6.22 -51.93 -0.32 0.21 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -28.45 377.31 -9.57 -38.02 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.02 Total: 9.09 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 0.46 Total: -10.85 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.24 Total: -58.74 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -2.27 Total: -48.96 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 52.32 SS G_CDS: -0.64 Total: 51.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.45 -9.57 -38.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.965 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds