Wall clock time and date at job start Tue Mar 31 2020 17:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.47086 * 2 1 4 4 H 1.09000 * 109.46487 * 303.72855 * 3 2 1 5 5 N 1.46494 * 109.47246 * 183.73147 * 3 2 1 6 6 S 1.65598 * 120.00642 * 94.39402 * 5 3 2 7 7 O 1.42098 * 106.40723 * 177.39929 * 6 5 3 8 8 O 1.42111 * 106.39988 * 310.32131 * 6 5 3 9 9 N 1.65597 * 107.21619 * 63.85444 * 6 5 3 10 10 C 1.46507 * 119.99757 * 90.00476 * 9 6 5 11 11 C 1.46499 * 120.00364 * 270.00491 * 9 6 5 12 12 H 1.08998 * 109.47072 * 0.02562 * 11 9 6 13 13 C 1.53002 * 109.47018 * 239.99734 * 11 9 6 14 14 C 1.50697 * 109.47213 * 120.00250 * 11 9 6 15 15 H 1.08000 * 120.00138 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00007 * 180.02562 * 14 11 9 17 17 N 1.31513 * 120.00225 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99894 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47298 * 90.00075 * 18 16 14 20 20 H 1.48498 * 109.47121 * 209.99903 * 18 16 14 21 21 H 1.48497 * 109.47080 * 330.00154 * 18 16 14 22 22 C 1.53002 * 109.47114 * 63.72676 * 3 2 1 23 23 H 1.08995 * 109.52029 * 305.12525 * 22 3 2 24 24 C 1.53179 * 109.52088 * 185.00084 * 22 3 2 25 25 C 1.53180 * 109.03512 * 183.11622 * 24 22 3 26 26 C 1.53090 * 109.16399 * 56.97883 * 25 24 22 27 27 O 1.42901 * 109.41809 * 302.39426 * 26 25 24 28 28 C 1.42905 * 114.09952 * 61.15492 * 27 26 25 29 29 H 1.09009 * 109.46810 * 293.96046 * 1 2 3 30 30 H 1.09005 * 109.47492 * 53.95608 * 1 2 3 31 31 H 1.09000 * 109.46994 * 173.96133 * 1 2 3 32 32 H 1.08997 * 109.47876 * 119.99605 * 2 1 3 33 33 H 1.08999 * 109.47187 * 240.00201 * 2 1 3 34 34 H 0.97006 * 119.99689 * 274.39701 * 5 3 2 35 35 H 1.09004 * 109.47101 * 90.00014 * 10 9 6 36 36 H 1.08990 * 109.47238 * 210.00081 * 10 9 6 37 37 H 1.08997 * 109.47047 * 330.00111 * 10 9 6 38 38 H 1.09001 * 109.46990 * 179.97438 * 13 11 9 39 39 H 1.08998 * 109.47471 * 300.00089 * 13 11 9 40 40 H 1.09004 * 109.46772 * 60.00127 * 13 11 9 41 41 H 0.97004 * 120.00112 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.54102 * 302.98499 * 24 22 3 43 43 H 1.08998 * 109.54072 * 63.15761 * 24 22 3 44 44 H 1.08997 * 109.52010 * 176.88724 * 25 24 22 45 45 H 1.09004 * 109.51746 * 297.07233 * 25 24 22 46 46 H 1.08999 * 109.47864 * 62.37366 * 26 25 24 47 47 H 1.08998 * 109.47849 * 182.41038 * 26 25 24 48 48 H 1.09002 * 109.48139 * 178.86145 * 28 27 26 49 49 H 1.08993 * 109.48056 * 58.82807 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6230 1.9752 -0.8547 5 7 3.5022 1.4436 -0.0899 6 16 4.2411 1.5850 -1.5651 7 8 5.6391 1.6148 -1.3125 8 8 3.6251 0.6277 -2.4158 9 7 3.8436 3.0738 -2.1717 10 6 4.6901 4.2334 -1.8799 11 6 2.6455 3.2313 -2.9999 12 1 2.1477 2.2675 -3.1058 13 6 3.0456 3.7539 -4.3812 14 6 1.7071 4.2115 -2.3446 15 1 1.9760 4.6709 -1.4049 16 6 0.5048 4.5211 -2.9442 17 7 0.1771 3.9614 -4.0882 18 14 -0.6588 5.7357 -2.1314 19 1 -0.3522 7.1088 -2.6065 20 1 -2.0595 5.3911 -2.4842 21 1 -0.4898 5.6726 -0.6575 22 6 1.6080 2.1363 1.2935 23 1 0.5268 2.0562 1.4061 24 6 2.0091 3.6137 1.2406 25 6 1.6419 4.2789 2.5707 26 6 2.3313 3.5302 3.7143 27 8 1.9391 2.1564 3.6873 28 6 2.2988 1.4703 2.4864 29 1 -0.3633 0.4174 0.9392 30 1 -0.3634 0.6047 -0.8310 31 1 -0.3633 -1.0220 -0.1081 32 1 1.8934 -0.5137 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 4.0376 1.3614 0.7148 35 1 5.4565 4.3266 -2.6494 36 1 4.0784 5.1353 -1.8654 37 1 5.1654 4.1010 -0.9080 38 1 2.1542 3.8706 -4.9976 39 1 3.5432 4.7178 -4.2750 40 1 3.7244 3.0448 -4.8552 41 1 -0.6687 4.1795 -4.5103 42 1 3.0838 3.6940 1.0771 43 1 1.4785 4.1066 0.4260 44 1 1.9739 5.3171 2.5625 45 1 0.5615 4.2421 2.7102 46 1 3.4125 3.6019 3.5959 47 1 2.0395 3.9730 4.6666 48 1 1.9835 0.4291 2.5543 49 1 3.3794 1.5150 2.3521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882760574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:24 Heat of formation + Delta-G solvation = -159.329182 kcal Electronic energy + Delta-G solvation = -30749.928056 eV Core-core repulsion = 26837.435152 eV Total energy + Delta-G solvation = -3912.492904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76136 -38.40682 -37.87652 -37.70283 -36.86066 -34.45212 -34.03909 -33.14209 -31.39933 -30.87981 -27.27285 -26.99457 -26.62175 -25.93446 -24.20888 -22.55906 -21.78722 -20.81673 -20.32629 -18.79451 -18.43001 -18.23161 -17.48141 -17.07208 -16.74630 -16.54228 -16.05731 -15.61817 -15.40510 -15.30416 -15.16457 -14.79581 -14.53001 -14.45893 -13.89699 -13.72299 -13.52108 -13.45205 -13.35530 -13.21587 -13.12281 -12.98610 -12.79744 -12.71983 -12.66743 -12.61230 -12.51039 -12.21185 -12.18082 -12.02140 -11.94564 -11.81172 -11.61182 -11.41022 -11.14752 -10.98403 -10.44989 -10.32517 -10.25937 -9.62646 -8.03589 -6.16165 -0.26360 1.45917 1.49939 1.56270 2.04047 2.48303 2.64629 2.98939 3.25941 3.46739 3.73289 3.82606 3.94402 4.09856 4.12571 4.16805 4.28744 4.34464 4.37307 4.53712 4.59054 4.62382 4.73574 4.76675 4.82106 4.85163 4.86752 4.97625 5.00101 5.05623 5.06336 5.15759 5.17057 5.20291 5.24244 5.29186 5.37223 5.38297 5.49481 5.57110 5.67316 5.75028 5.88470 6.11253 6.23864 6.30229 6.35481 6.93713 7.52849 9.01020 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009298 B = 0.006990 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.760660 B = 4004.924580 C = 5245.463419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.160 3.840 4 H 0.081 0.919 5 N -1.109 6.109 6 S 2.794 3.206 7 O -1.013 7.013 8 O -1.014 7.014 9 N -0.994 5.994 10 C 0.102 3.898 11 C 0.275 3.725 12 H 0.026 0.974 13 C -0.140 4.140 14 C -0.514 4.514 15 H 0.079 0.921 16 C 0.023 3.977 17 N -0.917 5.917 18 Si 0.942 3.058 19 H -0.283 1.283 20 H -0.295 1.295 21 H -0.257 1.257 22 C -0.114 4.114 23 H 0.089 0.911 24 C -0.123 4.123 25 C -0.152 4.152 26 C 0.059 3.941 27 O -0.396 6.396 28 C 0.067 3.933 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.418 0.582 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.014 0.986 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -1.190 14.234 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.052 3.948 4 H 0.099 0.901 5 N -0.872 5.872 6 S 2.803 3.197 7 O -0.997 6.997 8 O -0.997 6.997 9 N -0.836 5.836 10 C -0.043 4.043 11 C 0.171 3.829 12 H 0.044 0.956 13 C -0.200 4.200 14 C -0.553 4.553 15 H 0.097 0.903 16 C -0.176 4.176 17 N -0.557 5.557 18 Si 0.769 3.231 19 H -0.209 1.209 20 H -0.222 1.222 21 H -0.181 1.181 22 C -0.134 4.134 23 H 0.107 0.893 24 C -0.161 4.161 25 C -0.190 4.190 26 C -0.018 4.018 27 O -0.315 6.315 28 C -0.010 4.010 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.255 0.745 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.076 0.924 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.531 -1.922 13.672 14.251 hybrid contribution -0.714 1.058 -0.227 1.296 sum 2.817 -0.864 13.446 13.765 Atomic orbital electron populations 1.21762 0.94627 1.02267 1.02045 1.22074 0.96979 0.96114 1.02929 1.20869 0.77970 0.96435 0.99483 0.90102 1.55815 1.15161 1.90470 1.25722 1.01298 0.71871 0.73258 0.73281 1.93521 1.32174 1.87827 1.86162 1.93545 1.78415 1.60739 1.67040 1.57564 1.36888 1.24914 1.64272 1.21345 0.93368 0.89567 1.00043 1.18407 0.80554 0.96479 0.87464 0.95626 1.21962 1.00210 0.98525 0.99301 1.21598 1.01447 1.24994 1.07284 0.90332 1.25536 0.99343 0.97500 0.95256 1.70015 1.23370 1.44315 1.17954 0.85800 0.78117 0.79378 0.79828 1.20927 1.22180 1.18072 1.21935 1.01819 0.95657 0.94025 0.89291 1.21701 1.01875 0.94708 0.97783 1.22174 1.01343 1.00407 0.95056 1.22710 0.98528 0.81266 0.99274 1.87900 1.81625 1.23731 1.38223 1.22714 0.98485 0.96640 0.83182 0.91095 0.94242 0.91429 0.89341 0.92789 0.74467 0.93437 0.90250 0.90871 0.91259 0.93870 0.96733 0.93055 0.91469 0.92040 0.90071 0.91925 0.92402 0.87589 0.87536 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.49 71.98 0.68 -3.17 16 2 C -0.14 -3.89 5.59 30.60 0.17 -3.72 16 3 C 0.16 4.73 1.99 45.00 0.09 4.82 16 4 H 0.08 3.03 6.25 -2.39 -0.01 3.01 16 5 N -1.11 -31.92 4.90 -169.38 -0.83 -32.75 16 6 S 2.79 104.10 5.99 -56.49 -0.34 103.76 16 7 O -1.01 -39.35 17.21 -128.00 -2.20 -41.56 16 8 O -1.01 -45.39 15.88 -128.00 -2.03 -47.43 16 9 N -0.99 -38.33 3.12 -520.45 -1.62 -39.95 16 10 C 0.10 3.31 9.28 127.77 1.19 4.50 16 11 C 0.28 12.67 1.89 44.25 0.08 12.75 16 12 H 0.03 1.37 6.77 -2.39 -0.02 1.35 16 13 C -0.14 -6.53 8.97 71.98 0.65 -5.89 16 14 C -0.51 -23.78 7.18 25.60 0.18 -23.60 16 15 H 0.08 3.41 5.77 -2.91 -0.02 3.39 16 16 C 0.02 1.15 5.30 84.65 0.45 1.60 16 17 N -0.92 -48.91 11.32 21.45 0.24 -48.67 16 18 Si 0.94 39.34 29.54 68.60 2.03 41.36 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.30 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 22 C -0.11 -2.87 2.06 -10.70 -0.02 -2.89 16 23 H 0.09 2.30 6.43 -2.39 -0.02 2.28 16 24 C -0.12 -3.24 5.23 30.71 0.16 -3.08 16 25 C -0.15 -3.31 6.14 30.68 0.19 -3.12 16 26 C 0.06 1.11 6.84 72.01 0.49 1.61 16 27 O -0.40 -8.99 10.77 -148.98 -1.60 -10.59 16 28 C 0.07 1.40 5.62 72.01 0.40 1.80 16 29 H 0.07 1.58 6.72 -2.38 -0.02 1.57 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.09 1.91 6.47 -2.39 -0.02 1.89 16 33 H 0.05 1.75 7.53 -2.39 -0.02 1.73 16 34 H 0.42 9.57 6.70 -96.74 -0.65 8.92 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 2.57 7.02 -2.39 -0.02 2.55 16 37 H 0.07 1.99 7.79 -2.39 -0.02 1.97 16 38 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 39 H 0.04 1.86 7.67 -2.39 -0.02 1.84 16 40 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.26 13.45 8.31 -92.71 -0.77 12.68 16 42 H 0.07 1.69 7.68 -2.38 -0.02 1.68 16 43 H 0.06 1.98 6.53 -2.39 -0.02 1.97 16 44 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 47 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.11 1.98 6.62 -2.39 -0.02 1.96 16 49 H 0.06 1.10 6.22 -2.39 -0.01 1.08 16 Total: -1.00 -61.53 377.31 -1.35 -62.88 By element: Atomic # 1 Polarization: 31.03 SS G_CDS: 0.30 Total: 31.33 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 4.72 Total: -18.39 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -2.21 Total: -121.37 kcal Atomic # 8 Polarization: -93.74 SS G_CDS: -5.84 Total: -99.58 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 16 Polarization: 104.10 SS G_CDS: -0.34 Total: 103.76 kcal Total: -61.53 -1.35 -62.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.449 kcal (2) G-P(sol) polarization free energy of solvation -61.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds