Wall clock time and date at job start Tue Mar 31 2020 18:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46494 * 120.00068 * 90.00086 * 4 3 2 6 6 C 1.52999 * 109.47318 * 89.99451 * 5 4 3 7 7 H 1.09008 * 109.70558 * 60.00360 * 6 5 4 8 8 C 1.53471 * 109.71017 * 180.58017 * 6 5 4 9 9 O 1.43178 * 108.24080 * 179.42357 * 8 6 5 10 10 C 1.36110 * 116.70218 * 313.76989 * 9 8 6 11 11 C 1.38703 * 119.39734 * 197.25535 * 10 9 8 12 12 C 1.38196 * 120.06734 * 180.15258 * 11 10 9 13 13 C 1.38253 * 120.11405 * 0.02562 * 12 11 10 14 14 C 1.38199 * 120.11122 * 359.93793 * 13 12 11 15 15 C 1.38705 * 120.06531 * 359.95754 * 14 13 12 16 16 O 1.36130 * 119.37961 * 180.28542 * 15 14 13 17 17 C 1.34779 * 119.99616 * 269.99507 * 4 3 2 18 18 O 1.21590 * 119.99679 * 180.02562 * 17 4 3 19 19 N 1.34772 * 120.00165 * 0.02562 * 17 4 3 20 20 C 1.46499 * 120.00119 * 180.02562 * 19 17 4 21 21 C 1.50703 * 109.47429 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99328 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00047 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99804 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99976 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47112 * 90.00197 * 25 23 21 27 27 H 1.48507 * 109.46845 * 209.99891 * 25 23 21 28 28 H 1.48494 * 109.47025 * 329.99888 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09002 * 109.47065 * 209.99666 * 5 4 3 37 37 H 1.09000 * 109.47308 * 329.99499 * 5 4 3 38 38 H 1.08997 * 109.71160 * 299.11324 * 8 6 5 39 39 H 1.09004 * 109.70756 * 59.69521 * 8 6 5 40 40 H 1.08005 * 119.96473 * 0.13913 * 11 10 9 41 41 H 1.07999 * 119.94286 * 179.97438 * 12 11 10 42 42 H 1.07990 * 119.94465 * 179.91796 * 13 12 11 43 43 H 1.07999 * 119.96613 * 179.97438 * 14 13 12 44 44 H 0.97001 * 120.00244 * 359.97438 * 19 17 4 45 45 H 1.09008 * 109.46898 * 299.99930 * 20 19 17 46 46 H 1.08994 * 109.47165 * 59.99976 * 20 19 17 47 47 H 0.96999 * 119.99948 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2370 1.4427 -1.2696 6 6 4.4918 2.8852 -1.7112 7 1 5.0812 3.4027 -0.9542 8 6 5.2459 2.8918 -3.0479 9 8 5.4553 4.2535 -3.4376 10 6 4.3855 5.0892 -3.3396 11 6 4.4010 6.2977 -4.0200 12 6 3.3236 7.1582 -3.9278 13 6 2.2276 6.8172 -3.1570 14 6 2.2054 5.6142 -2.4772 15 6 3.2826 4.7452 -2.5672 16 8 3.2435 3.5613 -1.8964 17 6 4.1793 1.4424 1.1664 18 8 5.3952 1.4428 1.1659 19 7 3.5059 1.4418 2.3338 20 6 4.2389 1.4423 3.6022 21 6 3.2600 1.4409 4.7481 22 1 2.1982 1.4401 4.5511 23 6 3.7202 1.4405 6.0478 24 7 2.8659 1.4397 7.0477 25 14 5.5569 1.4410 6.3884 26 1 6.0431 2.8412 6.4793 27 1 5.8227 0.7405 7.6706 28 1 6.2648 0.7417 5.2862 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 5.1895 0.9288 -1.1397 37 1 3.6476 0.9289 -2.0291 38 1 6.2069 2.3911 -2.9303 39 1 4.6544 2.3785 -3.8061 40 1 5.2562 6.5667 -4.6224 41 1 3.3380 8.0989 -4.4581 42 1 1.3877 7.4923 -3.0858 43 1 1.3483 5.3505 -1.8754 44 1 2.5359 1.4419 2.3342 45 1 4.8662 0.5527 3.6597 46 1 4.8649 2.3327 3.6598 47 1 3.1896 1.4391 7.9621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894485095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:50 Heat of formation + Delta-G solvation = -76.112875 kcal Electronic energy + Delta-G solvation = -29352.801868 eV Core-core repulsion = 25308.473543 eV Total energy + Delta-G solvation = -4044.328325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.46122 -39.79275 -37.92717 -37.40617 -36.01759 -34.55161 -33.29722 -32.35387 -31.49223 -30.82192 -29.12042 -27.93152 -26.63161 -25.50186 -23.77741 -22.89025 -22.03776 -21.55651 -20.84065 -19.53074 -18.99177 -17.99874 -17.59028 -16.97753 -16.42045 -16.23922 -15.63651 -15.26987 -14.99749 -14.86393 -14.70005 -14.57345 -14.32559 -14.06239 -14.00081 -13.90455 -13.44278 -13.20173 -13.06550 -12.47717 -12.31298 -12.27306 -12.10286 -12.05699 -11.98431 -11.57636 -11.41237 -11.31527 -11.11804 -10.97595 -10.76344 -10.74242 -10.60688 -9.96215 -9.57613 -9.45458 -8.83732 -8.77706 -8.61103 -8.22989 -7.99620 -6.20296 -4.22105 1.10267 1.13241 2.75977 3.00853 3.05199 3.28144 3.34971 3.43398 3.53981 3.69196 4.06144 4.34512 4.44764 4.53250 4.60293 4.65162 4.79716 4.92859 4.96250 5.02648 5.04497 5.09941 5.15428 5.21156 5.27141 5.28872 5.43378 5.45764 5.57994 5.68091 5.71166 5.81895 5.94675 5.98402 6.01203 6.11548 6.26560 6.29290 6.44001 6.58462 6.72533 6.81485 7.11487 7.22672 7.27204 7.37032 7.48552 8.25227 8.64779 8.79366 9.15144 9.40896 10.91691 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.003027 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.111519 B = 9246.407365 C = 9797.683317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.630 5.630 5 C 0.150 3.850 6 C 0.034 3.966 7 H 0.092 0.908 8 C 0.030 3.970 9 O -0.306 6.306 10 C 0.047 3.953 11 C -0.116 4.116 12 C -0.121 4.121 13 C -0.117 4.117 14 C -0.115 4.115 15 C 0.058 3.942 16 O -0.297 6.297 17 C 0.697 3.303 18 O -0.604 6.604 19 N -0.719 5.719 20 C 0.237 3.763 21 C -0.541 4.541 22 H 0.079 0.921 23 C 0.078 3.922 24 N -0.893 5.893 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.260 1.260 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.393 0.607 45 H 0.023 0.977 46 H 0.018 0.982 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 4.730 -24.769 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.010 4.010 4 N -0.366 5.366 5 C 0.025 3.975 6 C -0.025 4.025 7 H 0.110 0.890 8 C -0.046 4.046 9 O -0.221 6.221 10 C 0.002 3.998 11 C -0.135 4.135 12 C -0.140 4.140 13 C -0.135 4.135 14 C -0.134 4.134 15 C 0.012 3.988 16 O -0.211 6.211 17 C 0.398 3.602 18 O -0.483 6.483 19 N -0.372 5.372 20 C 0.115 3.885 21 C -0.579 4.579 22 H 0.097 0.903 23 C -0.126 4.126 24 N -0.530 5.530 25 Si 0.703 3.297 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.185 1.185 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.229 0.771 45 H 0.041 0.959 46 H 0.036 0.964 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.763 4.655 -24.462 24.963 hybrid contribution 0.452 -0.072 0.432 0.630 sum -1.310 4.583 -24.030 24.498 Atomic orbital electron populations 1.21694 0.95134 1.01894 1.01994 1.21997 0.96174 0.97430 1.02800 1.21588 0.79358 0.96525 1.03490 1.46987 1.06087 1.79347 1.04211 1.21142 0.99349 0.91551 0.85437 1.23852 0.84920 0.96565 0.97131 0.89009 1.23601 1.03579 0.81642 0.95794 1.86309 1.32872 1.19908 1.82972 1.18970 0.88533 0.93335 0.98985 1.20433 1.00006 0.92631 1.00390 1.20888 0.93230 0.99588 1.00259 1.20919 0.98868 0.96058 0.97675 1.20488 0.98140 0.92912 1.01854 1.19006 0.95934 0.88561 0.95276 1.86343 1.31734 1.31303 1.71768 1.16085 0.85381 0.78079 0.80627 1.90853 1.11747 1.59316 1.86428 1.45539 1.09990 1.76737 1.04900 1.19373 0.92903 0.96603 0.79658 1.21073 0.94345 1.53187 0.89332 0.90350 1.24770 0.98118 0.93894 0.95774 1.69878 1.34408 1.49552 0.99182 0.86820 0.85561 0.79055 0.78278 1.19872 1.20934 1.18457 0.92565 0.92817 0.92184 0.91214 0.91977 0.89814 0.90579 0.87425 0.89743 0.85771 0.90412 0.85021 0.85250 0.85181 0.84808 0.77145 0.95887 0.96436 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.15 -1.61 6.26 -26.73 -0.17 -1.78 16 3 C 0.11 1.39 4.93 -4.04 -0.02 1.37 16 4 N -0.63 -9.25 2.40 -179.42 -0.43 -9.68 16 5 C 0.15 1.77 5.15 -4.05 -0.02 1.75 16 6 C 0.03 0.41 3.29 -26.49 -0.09 0.32 16 7 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 8 C 0.03 0.30 6.56 37.40 0.25 0.54 16 9 O -0.31 -3.79 10.42 -32.85 -0.34 -4.13 16 10 C 0.05 0.58 6.49 -39.14 -0.25 0.33 16 11 C -0.12 -1.21 9.96 -39.42 -0.39 -1.60 16 12 C -0.12 -1.08 10.04 -39.59 -0.40 -1.47 16 13 C -0.12 -1.07 10.04 -39.59 -0.40 -1.47 16 14 C -0.12 -1.27 9.96 -39.42 -0.39 -1.66 16 15 C 0.06 0.73 6.49 -39.14 -0.25 0.48 16 16 O -0.30 -3.86 8.74 -32.91 -0.29 -4.15 16 17 C 0.70 13.76 8.28 -86.92 -0.72 13.05 16 18 O -0.60 -13.90 15.92 5.29 0.08 -13.81 16 19 N -0.72 -15.09 5.41 -66.41 -0.36 -15.45 16 20 C 0.24 5.95 4.50 -5.19 -0.02 5.92 16 21 C -0.54 -14.96 9.83 -34.44 -0.34 -15.30 16 22 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 23 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 24 N -0.89 -26.58 13.96 55.43 0.77 -25.80 16 25 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 26 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.92 7.08 -51.93 -0.37 0.56 16 35 H 0.08 1.00 6.36 -51.93 -0.33 0.67 16 36 H 0.11 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 38 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.39 7.46 6.05 -40.82 -0.25 7.22 16 45 H 0.02 0.61 7.20 -51.92 -0.37 0.23 16 46 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 47 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 385.52 15.07 5.81 5.81 Total: -1.00 -33.79 385.52 -9.54 -43.33 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.17 Total: 5.38 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.95 Total: 1.55 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.02 Total: -50.94 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.55 Total: -22.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.79 -9.54 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.781 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds